RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, human

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-215	ENST00000565236	NUTM2A	Q8IVF1	878 aa	Predicted RBP	33.02	■■■□□ 2.88
CLN3-215	ENST00000565236	TECPR2	O15040	1411 aa		33.02	■■■□□ 2.88
CLN3-215	ENST00000565236	CFAP70	Q5T0N1	1121 aa		32.99	■■■□□ 2.87
CLN3-215	ENST00000565236	YTHDC2	Q9H6S0	1430 aa	Known RBP	32.99	■■■□□ 2.87
CLN3-215	ENST00000565236	MYOM2	P54296	1465 aa		32.98	■■■□□ 2.87
CLN3-215	ENST00000565236	NRXN1	Q9ULB1	1477 aa		32.97	■■■□□ 2.87
CLN3-215	ENST00000565236	ESCO1	Q5FWF5	840 aa		32.95	■■■□□ 2.87
CLN3-215	ENST00000565236	DHX57	Q6P158	1386 aa	Known RBP	32.95	■■■□□ 2.86
CLN3-215	ENST00000565236	ZNF772	Q68DY9	489 aa	Predicted RBP	32.94	■■■□□ 2.86
CLN3-215	ENST00000565236	CDC42BPG	Q6DT37	1551 aa		32.94	■■■□□ 2.86
CLN3-215	ENST00000565236	SIRT1	Q96EB6	747 aa		32.93	■■■□□ 2.86
CLN3-215	ENST00000565236	KNDC1	Q76NI1	1749 aa		32.93	■■■□□ 2.86
CLN3-215	ENST00000565236	PLEKHH1	Q9ULM0	1364 aa		32.93	■■■□□ 2.86
CLN3-215	ENST00000565236	SOS2	Q07890	1332 aa	Predicted RBP	32.92	■■■□□ 2.86
CLN3-215	ENST00000565236	PNPLA6	Q8IY17	1366 aa		32.92	■■■□□ 2.86
CLN3-215	ENST00000565236	NUTM2F	A1L443	756 aa		32.9	■■■□□ 2.86
CLN3-215	ENST00000565236	KDM2A	Q9Y2K7	1162 aa		32.9	■■■□□ 2.86
CLN3-215	ENST00000565236	LAMC1	P11047	1609 aa		32.9	■■■□□ 2.86
CLN3-215	ENST00000565236	DCAF11	Q8TEB1	546 aa		32.89	■■■□□ 2.86
CLN3-215	ENST00000565236	NPHP3	Q7Z494	1330 aa		32.85	■■■□□ 2.85
CLN3-215	ENST00000565236	STAC3	Q96MF2	364 aa		32.85	■■■□□ 2.85
CLN3-215	ENST00000565236	FOXO3	O43524	673 aa		32.83	■■■□□ 2.85
CLN3-215	ENST00000565236	PRAM1	Q96QH2	718 aa		32.82	■■■□□ 2.84
CLN3-215	ENST00000565236	AFF2	P51816	1311 aa		32.81	■■■□□ 2.84
CLN3-215	ENST00000565236	C8orf37	Q96NL8	207 aa		32.81	■■■□□ 2.84
CLN3-215	ENST00000565236	SAFB2	Q14151	953 aa	Known RBP eCLIP	32.8	■■■□□ 2.84
CLN3-215	ENST00000565236	POGK	Q9P215	609 aa		32.8	■■■□□ 2.84
CLN3-215	ENST00000565236	ADAMTS2	O95450	1211 aa		32.78	■■■□□ 2.84
CLN3-215	ENST00000565236	XPC	Q01831	940 aa	Predicted RBP	32.77	■■■□□ 2.84
CLN3-215	ENST00000565236	FMN2	Q9NZ56	1722 aa		32.77	■■■□□ 2.84
CLN3-215	ENST00000565236	RXRB	P28702	533 aa		32.75	■■■□□ 2.83
CLN3-215	ENST00000565236	NGLY1	Q96IV0	654 aa		32.75	■■■□□ 2.83
CLN3-215	ENST00000565236	TRAK1	Q9UPV9	953 aa		32.75	■■■□□ 2.83
CLN3-215	ENST00000565236	DLC1	Q96QB1	1528 aa		32.73	■■■□□ 2.83
CLN3-215	ENST00000565236	PXDN	Q92626	1479 aa		32.73	■■■□□ 2.83
CLN3-215	ENST00000565236	ADGRB1	O14514	1584 aa		32.72	■■■□□ 2.83
CLN3-215	ENST00000565236	QTRT2	Q9H974	415 aa	Known RBP	32.68	■■■□□ 2.82
CLN3-215	ENST00000565236	PHF8	Q9UPP1	1060 aa		32.68	■■■□□ 2.82
CLN3-215	ENST00000565236	KRT28	Q7Z3Y7	464 aa		32.67	■■■□□ 2.82
CLN3-215	ENST00000565236	COL22A1	Q8NFW1	1626 aa	Predicted RBP	32.66	■■■□□ 2.82
CLN3-215	ENST00000565236	KIF1A	Q12756	1690 aa		32.66	■■■□□ 2.82
CLN3-215	ENST00000565236	RGPD8	O14715	1765 aa	Predicted RBP	32.65	■■■□□ 2.82
CLN3-215	ENST00000565236	MINK1	Q8N4C8	1332 aa	Predicted RBP	32.63	■■■□□ 2.81
CLN3-215	ENST00000565236	HIRIP3	Q9BW71	556 aa	Predicted RBP	32.63	■■■□□ 2.81
CLN3-215	ENST00000565236	SPATA31A3	Q5VYP0	1347 aa		32.62	■■■□□ 2.81
CLN3-215	ENST00000565236	PSME1	Q06323	249 aa		32.62	■■■□□ 2.81
CLN3-215	ENST00000565236	RBM6	P78332	1123 aa	Known RBP	32.61	■■■□□ 2.81
CLN3-215	ENST00000565236	USP21	Q9UK80	565 aa		32.61	■■■□□ 2.81
CLN3-215	ENST00000565236	FNBP4	Q8N3X1	1017 aa	Predicted RBP	32.58	■■■□□ 2.81
CLN3-215	ENST00000565236	CDK12	Q9NYV4	1490 aa	Predicted RBP	32.58	■■■□□ 2.81
CLN3-215	ENST00000565236	ANKAR	Q7Z5J8	1434 aa		32.58	■■■□□ 2.81
CLN3-215	ENST00000565236	ADGRB2	O60241	1585 aa		32.57	■■■□□ 2.8
CLN3-215	ENST00000565236	PMFBP1	Q8TBY8	1022 aa		32.56	■■■□□ 2.8
CLN3-215	ENST00000565236	WASL	O00401	505 aa	Predicted RBP	32.55	■■■□□ 2.8
CLN3-215	ENST00000565236	EIF3A	Q14152	1382 aa	Known RBP	32.55	■■■□□ 2.8
CLN3-215	ENST00000565236	TRPC5	Q9UL62	973 aa	Predicted RBP	32.54	■■■□□ 2.8
CLN3-215	ENST00000565236	USP32	Q8NFA0	1604 aa		32.51	■■■□□ 2.8
CLN3-215	ENST00000565236	LMOD2	Q6P5Q4	547 aa		32.51	■■■□□ 2.79
CLN3-215	ENST00000565236	TNS3	Q68CZ2	1445 aa		32.5	■■■□□ 2.79
CLN3-215	ENST00000565236	SBNO1	A3KN83	1393 aa		32.49	■■■□□ 2.79
CLN3-215	ENST00000565236	HAP1	P54257	671 aa	Predicted RBP	32.49	■■■□□ 2.79
CLN3-215	ENST00000565236	PRR36	Q9H6K5	1346 aa		32.48	■■■□□ 2.79
CLN3-215	ENST00000565236	ARHGEF28	Q8N1W1	1705 aa	Known RBP	32.47	■■■□□ 2.79
CLN3-215	ENST00000565236	UPF1	Q92900	1129 aa	Known RBP eCLIP	32.47	■■■□□ 2.79
CLN3-215	ENST00000565236	MARF1	Q9Y4F3	1742 aa	Known RBP	32.47	■■■□□ 2.79
CLN3-215	ENST00000565236	TULP4	Q9NRJ4	1543 aa		32.46	■■■□□ 2.79
CLN3-215	ENST00000565236	KIAA1210	Q9ULL0	1709 aa		32.46	■■■□□ 2.79
CLN3-215	ENST00000565236	PLEKHG5	O94827	1062 aa		32.46	■■■□□ 2.79
CLN3-215	ENST00000565236	NBPF1	Q3BBV0	1214 aa		32.46	■■■□□ 2.79
CLN3-215	ENST00000565236	RGS12	O14924	1447 aa		32.45	■■■□□ 2.79
CLN3-215	ENST00000565236	ARHGEF10	O15013	1369 aa		32.45	■■■□□ 2.78
CLN3-215	ENST00000565236	GPRASP1	Q5JY77	1395 aa		32.45	■■■□□ 2.78
CLN3-215	ENST00000565236	CABLES1	Q8TDN4	633 aa		32.44	■■■□□ 2.78
CLN3-215	ENST00000565236	NGDN	Q8NEJ9	315 aa	Known RBP	32.43	■■■□□ 2.78
CLN3-215	ENST00000565236	ATRN	O75882	1429 aa		32.43	■■■□□ 2.78
CLN3-215	ENST00000565236	BCL9L	Q86UU0	1499 aa		32.42	■■■□□ 2.78
CLN3-215	ENST00000565236	L3MBTL2	Q969R5	705 aa		32.42	■■■□□ 2.78
CLN3-215	ENST00000565236	SIN3A	Q96ST3	1273 aa		32.42	■■■□□ 2.78
CLN3-215	ENST00000565236	NUDT16	Q96DE0	195 aa	Known RBP	32.4	■■■□□ 2.78
CLN3-215	ENST00000565236	CDK19	Q9BWU1	502 aa		32.4	■■■□□ 2.78
CLN3-215	ENST00000565236	NEUROD1	Q13562	356 aa		32.38	■■■□□ 2.77
CLN3-215	ENST00000565236	UNC5CL	Q8IV45	518 aa		32.37	■■■□□ 2.77
CLN3-215	ENST00000565236	GJD4	Q96KN9	370 aa	Predicted RBP	32.35	■■■□□ 2.77
CLN3-215	ENST00000565236	PAK3	O75914	559 aa	Predicted RBP	32.34	■■■□□ 2.77
CLN3-215	ENST00000565236	SLIT2	O94813	1529 aa		32.34	■■■□□ 2.77
CLN3-215	ENST00000565236	ATP7B	P35670	1465 aa		32.32	■■■□□ 2.76
CLN3-215	ENST00000565236	TRPM3	Q9HCF6	1732 aa	Predicted RBP	32.31	■■■□□ 2.76
CLN3-215	ENST00000565236	ITSN1	Q15811	1721 aa		32.31	■■■□□ 2.76
CLN3-215	ENST00000565236	CCDC61	Q9Y6R9	512 aa		32.3	■■■□□ 2.76
CLN3-215	ENST00000565236	CENPJ	Q9HC77	1338 aa	Predicted RBP	32.29	■■■□□ 2.76
CLN3-215	ENST00000565236	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	32.29	■■■□□ 2.76
CLN3-215	ENST00000565236	FAM83G	A6ND36	823 aa		32.26	■■■□□ 2.75
CLN3-215	ENST00000565236	ATAD2	Q6PL18	1390 aa		32.26	■■■□□ 2.75
CLN3-215	ENST00000565236	ALS2	Q96Q42	1657 aa		32.26	■■■□□ 2.75
CLN3-215	ENST00000565236	ABCA3	Q99758	1704 aa		32.26	■■■□□ 2.75
CLN3-215	ENST00000565236	SRPK2	P78362	688 aa	Known RBP	32.25	■■■□□ 2.75
CLN3-215	ENST00000565236	ACE	P12821	1306 aa		32.23	■■■□□ 2.75
CLN3-215	ENST00000565236	RALGAPB	Q86X10	1494 aa		32.23	■■■□□ 2.75
CLN3-215	ENST00000565236	PLEKHG3	A1L390	1219 aa		32.22	■■■□□ 2.75
CLN3-215	ENST00000565236	VPS72	Q15906	364 aa		32.22	■■■□□ 2.75

Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms