RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 PXYLP1Q8TE99 480 aa10.08□□□□□ -0.8
VPS35-205ENST00000563984 SENP2Q9HC62 589 aa10.08□□□□□ -0.8
VPS35-205ENST00000563984 NLRP7Q8WX94 980 aa10.07□□□□□ -0.8
VPS35-205ENST00000563984 BCANQ96GW7 911 aa10.07□□□□□ -0.8
VPS35-205ENST00000563984 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.06□□□□□ -0.8
VPS35-205ENST00000563984 SUZ12Q15022 739 aaKnown RBP10.06□□□□□ -0.8
VPS35-205ENST00000563984 METTL3Q86U44 580 aaKnown RBP10.05□□□□□ -0.8
VPS35-205ENST00000563984 MAP2K5Q13163 448 aa10.04□□□□□ -0.8
VPS35-205ENST00000563984 ZSCAN1Q8NBB4 408 aa10.04□□□□□ -0.8
VPS35-205ENST00000563984 THAP11Q96EK4 314 aa10.04□□□□□ -0.8
VPS35-205ENST00000563984 MINK1Q8N4C8 1332 aaPredicted RBP10.04□□□□□ -0.8
VPS35-205ENST00000563984 GMPRP36959 345 aa10.03□□□□□ -0.8
VPS35-205ENST00000563984 FAM160A2Q8N612 972 aaPredicted RBP10.03□□□□□ -0.8
VPS35-205ENST00000563984 SNIP1Q8TAD8 396 aaKnown RBP10.03□□□□□ -0.8
VPS35-205ENST00000563984 J3QL48 77 aa10.02□□□□□ -0.81
VPS35-205ENST00000563984 WNT7AO00755 349 aa10.01□□□□□ -0.81
VPS35-205ENST00000563984 IRF6O14896 467 aa10.01□□□□□ -0.81
VPS35-205ENST00000563984 KIFC2Q96AC6 838 aa10.01□□□□□ -0.81
VPS35-205ENST00000563984 SLC16A10Q8TF71 515 aa10□□□□□ -0.81
VPS35-205ENST00000563984 ZC3H15Q8WU90 426 aaKnown RBP10□□□□□ -0.81
VPS35-205ENST00000563984 ZMYND10O75800 440 aa9.99□□□□□ -0.81
VPS35-205ENST00000563984 MORN1Q5T089 497 aa9.99□□□□□ -0.81
VPS35-205ENST00000563984 HPS1Q92902 700 aa9.99□□□□□ -0.81
VPS35-205ENST00000563984 BARGINQ6ZT62 677 aa9.98□□□□□ -0.81
VPS35-205ENST00000563984 PRDM9Q9NQV7 894 aa9.98□□□□□ -0.81
VPS35-205ENST00000563984 NXF1Q9UBU9 619 aaKnown RBP9.98□□□□□ -0.81
VPS35-205ENST00000563984 PHOX2BQ99453 314 aa9.97□□□□□ -0.81
VPS35-205ENST00000563984 DDX11L8A8MPP1 907 aa9.96□□□□□ -0.82
VPS35-205ENST00000563984 ZBTB24O43167 697 aaPredicted RBP9.96□□□□□ -0.82
VPS35-205ENST00000563984 KRI1Q8N9T8 703 aaKnown RBP9.96□□□□□ -0.82
VPS35-205ENST00000563984 RDH13Q8NBN7 331 aa9.96□□□□□ -0.82
VPS35-205ENST00000563984 MRGPRX2Q96LB1 330 aa9.96□□□□□ -0.82
VPS35-205ENST00000563984 DAXXQ9UER7 740 aaPredicted RBP9.96□□□□□ -0.82
VPS35-205ENST00000563984 RSPH4AQ5TD94 716 aa9.95□□□□□ -0.82
VPS35-205ENST00000563984 FMNL1O95466 1100 aaPredicted RBP9.94□□□□□ -0.82
VPS35-205ENST00000563984 CCDC102AQ96A19 550 aa9.94□□□□□ -0.82
VPS35-205ENST00000563984 IRF7Q92985 503 aa9.93□□□□□ -0.82
VPS35-205ENST00000563984 SLC27A5Q9Y2P5 690 aa9.92□□□□□ -0.82
VPS35-205ENST00000563984 FUT2Q10981 343 aa9.91□□□□□ -0.82
VPS35-205ENST00000563984 TRIM32Q13049 653 aa9.91□□□□□ -0.82
VPS35-205ENST00000563984 SULF1Q8IWU6 871 aa9.91□□□□□ -0.82
VPS35-205ENST00000563984 NPAS3Q8IXF0 933 aa9.91□□□□□ -0.82
VPS35-205ENST00000563984 BRICD5Q6PL45 260 aa9.9□□□□□ -0.82
VPS35-205ENST00000563984 SALL2Q9Y467 1007 aaPredicted RBP9.9□□□□□ -0.82
VPS35-205ENST00000563984 ERBB4Q15303 1308 aa9.89□□□□□ -0.83
VPS35-205ENST00000563984 ATP6V1AP38606 617 aa9.89□□□□□ -0.83
VPS35-205ENST00000563984 VEGFBP49765 207 aa9.89□□□□□ -0.83
VPS35-205ENST00000563984 H3BM21 787 aa9.88□□□□□ -0.83
VPS35-205ENST00000563984 MSS51Q4VC12 460 aa9.88□□□□□ -0.83
VPS35-205ENST00000563984 MDM2Q00987 491 aaPredicted RBP9.86□□□□□ -0.83
VPS35-205ENST00000563984 CLCN1P35523 988 aa9.85□□□□□ -0.83
VPS35-205ENST00000563984 RNF19BQ6ZMZ0 732 aa9.85□□□□□ -0.83
VPS35-205ENST00000563984 REPIN1Q9BWE0 567 aaKnown RBP9.85□□□□□ -0.83
VPS35-205ENST00000563984 GPCPD1Q9NPB8 672 aa9.85□□□□□ -0.83
VPS35-205ENST00000563984 TRIM46Q7Z4K8 759 aa9.84□□□□□ -0.83
VPS35-205ENST00000563984 AK7Q96M32 723 aa9.84□□□□□ -0.83
VPS35-205ENST00000563984 GCGRP47871 477 aa9.83□□□□□ -0.84
VPS35-205ENST00000563984 GSK3AP49840 483 aa9.83□□□□□ -0.84
VPS35-205ENST00000563984 AMHR2Q16671 573 aa9.83□□□□□ -0.84
VPS35-205ENST00000563984 RC3H1Q5TC82 1133 aaKnown RBP9.82□□□□□ -0.84
VPS35-205ENST00000563984 KCTD17Q8N5Z5 321 aa9.82□□□□□ -0.84
VPS35-205ENST00000563984 BMP1P13497 986 aa9.81□□□□□ -0.84
VPS35-205ENST00000563984 MMP16P51512 607 aa9.81□□□□□ -0.84
VPS35-205ENST00000563984 SKOR1P84550 965 aa9.81□□□□□ -0.84
VPS35-205ENST00000563984 KCNMA1Q12791 1236 aa9.81□□□□□ -0.84
VPS35-205ENST00000563984 TRIM66O15016 1216 aa9.8□□□□□ -0.84
VPS35-205ENST00000563984 CD46P15529 392 aa9.8□□□□□ -0.84
VPS35-205ENST00000563984 FAM217BQ9NTX9 383 aaPredicted RBP9.8□□□□□ -0.84
VPS35-205ENST00000563984 TTLL12Q14166 644 aaPredicted RBP9.78□□□□□ -0.84
VPS35-205ENST00000563984 SLC24A3Q9HC58 644 aa9.78□□□□□ -0.84
VPS35-205ENST00000563984 HLA-CQ95604 372 aa9.77□□□□□ -0.85
VPS35-205ENST00000563984 ALDH1A1P00352 501 aa9.76□□□□□ -0.85
VPS35-205ENST00000563984 GRIPAP1Q4V328 841 aa9.76□□□□□ -0.85
VPS35-205ENST00000563984 SSTR3P32745 418 aaPredicted RBP9.75□□□□□ -0.85
VPS35-205ENST00000563984 WNT7BP56706 349 aa9.75□□□□□ -0.85
VPS35-205ENST00000563984 CAPN5O15484 640 aaPredicted RBP9.74□□□□□ -0.85
VPS35-205ENST00000563984 GIGYF2Q6Y7W6 1299 aaKnown RBP9.74□□□□□ -0.85
VPS35-205ENST00000563984 SIAH2O43255 324 aa9.73□□□□□ -0.85
VPS35-205ENST00000563984 KDM4AO75164 1064 aa9.73□□□□□ -0.85
VPS35-205ENST00000563984 DXOO77932 396 aaKnown RBP9.73□□□□□ -0.85
VPS35-205ENST00000563984 USP46P62068 366 aa9.73□□□□□ -0.85
VPS35-205ENST00000563984 GUCA2AQ02747 115 aa9.72□□□□□ -0.85
VPS35-205ENST00000563984 PDE4DQ08499 809 aa9.72□□□□□ -0.85
VPS35-205ENST00000563984 PARP9Q8IXQ6 854 aa9.72□□□□□ -0.85
VPS35-205ENST00000563984 ZFP42Q96MM3 310 aa9.71□□□□□ -0.86
VPS35-205ENST00000563984 VSIG8P0DPA2 414 aa9.7□□□□□ -0.86
VPS35-205ENST00000563984 NUTM1Q86Y26 1132 aa9.69□□□□□ -0.86
VPS35-205ENST00000563984 CCDC24Q8N4L8 307 aa9.69□□□□□ -0.86
VPS35-205ENST00000563984 Q3C1V9 767 aa9.68□□□□□ -0.86
VPS35-205ENST00000563984 TMEM151AQ8N4L1 468 aa9.68□□□□□ -0.86
VPS35-205ENST00000563984 USB1Q9BQ65 265 aaKnown RBP9.68□□□□□ -0.86
VPS35-205ENST00000563984 HOXA2O43364 376 aa9.67□□□□□ -0.86
VPS35-205ENST00000563984 SYMPKQ92797 1274 aaKnown RBP9.66□□□□□ -0.86
VPS35-205ENST00000563984 BEGAINQ9BUH8 593 aa9.66□□□□□ -0.86
VPS35-205ENST00000563984 GDF11O95390 407 aa9.65□□□□□ -0.86
VPS35-205ENST00000563984 MS4A1P11836 297 aa9.65□□□□□ -0.86
VPS35-205ENST00000563984 RASSF7Q02833 373 aa9.65□□□□□ -0.86
VPS35-205ENST00000563984 DIXDC1Q155Q3 683 aa9.65□□□□□ -0.86
VPS35-205ENST00000563984 WASF2Q9Y6W5 498 aa9.65□□□□□ -0.86
VPS35-205ENST00000563984 SPIRE2Q8WWL2 714 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms