RNA–Protein interactions for RNA: ENST00000563683.5

RNF40-204, Transcript of ring finger protein 40, humanhuman

TSL 5 BASIC

Gene RNF40, Length 4,063 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-204ENST00000563683 COG3Q96JB2 828 aa13.09□□□□□ -0.31
RNF40-204ENST00000563683 SLC4A10Q6U841 1118 aa13.09□□□□□ -0.31
RNF40-204ENST00000563683 FOXD4L1Q9NU39 408 aa13.09□□□□□ -0.31
RNF40-204ENST00000563683 CEP170Q5SW79 1584 aa13.09□□□□□ -0.31
RNF40-204ENST00000563683 KDM5DQ9BY66 1539 aa13.08□□□□□ -0.31
RNF40-204ENST00000563683 NSD3Q9BZ95 1437 aa13.08□□□□□ -0.31
RNF40-204ENST00000563683 CABP1Q9NZU7 370 aa13.08□□□□□ -0.31
RNF40-204ENST00000563683 PLCH2O75038 1416 aa13.08□□□□□ -0.32
RNF40-204ENST00000563683 RRP9O43818 475 aaKnown RBP13.08□□□□□ -0.32
RNF40-204ENST00000563683 HSP90AA2PQ14568 343 aaPredicted RBP13.08□□□□□ -0.32
RNF40-204ENST00000563683 NGDNQ8NEJ9 315 aaKnown RBP13.08□□□□□ -0.32
RNF40-204ENST00000563683 ADGRL1O94910 1474 aa13.08□□□□□ -0.32
RNF40-204ENST00000563683 GPRASP1Q5JY77 1395 aa13.08□□□□□ -0.32
RNF40-204ENST00000563683 CLCN1P35523 988 aa13.08□□□□□ -0.32
RNF40-204ENST00000563683 PDE3AQ14432 1141 aa13.08□□□□□ -0.32
RNF40-204ENST00000563683 CROCC2H7BZ55 1655 aa13.08□□□□□ -0.32
RNF40-204ENST00000563683 LTV1Q96GA3 475 aaPredicted RBP13.07□□□□□ -0.32
RNF40-204ENST00000563683 DDX19BQ9UMR2 479 aa13.07□□□□□ -0.32
RNF40-204ENST00000563683 PLEKHH1Q9ULM0 1364 aa13.07□□□□□ -0.32
RNF40-204ENST00000563683 ZNF521Q96K83 1311 aa13.07□□□□□ -0.32
RNF40-204ENST00000563683 LNPKQ9C0E8 428 aa13.07□□□□□ -0.32
RNF40-204ENST00000563683 SHANK2Q9UPX8 1470 aa13.07□□□□□ -0.32
RNF40-204ENST00000563683 NINLQ9Y2I6 1382 aa13.06□□□□□ -0.32
RNF40-204ENST00000563683 USP19O94966 1318 aa13.06□□□□□ -0.32
RNF40-204ENST00000563683 FANCAO15360 1455 aa13.06□□□□□ -0.32
RNF40-204ENST00000563683 SCAF11Q99590 1463 aaKnown RBP13.06□□□□□ -0.32
RNF40-204ENST00000563683 PRKAR2BP31323 418 aa13.05□□□□□ -0.32
RNF40-204ENST00000563683 HAP1P54257 671 aaPredicted RBP13.05□□□□□ -0.32
RNF40-204ENST00000563683 TRIM44Q96DX7 344 aaPredicted RBP13.05□□□□□ -0.32
RNF40-204ENST00000563683 IDI1Q13907 227 aa13.05□□□□□ -0.32
RNF40-204ENST00000563683 CDK19Q9BWU1 502 aa13.05□□□□□ -0.32
RNF40-204ENST00000563683 PDZRN3Q9UPQ7 1066 aa13.05□□□□□ -0.32
RNF40-204ENST00000563683 NKTRP30414 1462 aaKnown RBP13.05□□□□□ -0.32
RNF40-204ENST00000563683 AMPHP49418 695 aa13.04□□□□□ -0.32
RNF40-204ENST00000563683 AAMPQ13685 434 aa13.04□□□□□ -0.32
RNF40-204ENST00000563683 TRPM1Q7Z4N2 1603 aa13.04□□□□□ -0.32
RNF40-204ENST00000563683 SLC52A1Q9NWF4 448 aa13.04□□□□□ -0.32
RNF40-204ENST00000563683 XRCC6P12956 609 aaKnown RBP eCLIP13.03□□□□□ -0.32
RNF40-204ENST00000563683 LMOD3Q0VAK6 560 aa13.03□□□□□ -0.32
RNF40-204ENST00000563683 TXNDC2Q86VQ3 553 aa13.03□□□□□ -0.32
RNF40-204ENST00000563683 VSIG10Q8N0Z9 540 aa13.03□□□□□ -0.32
RNF40-204ENST00000563683 NOS1P29475 1434 aa13.03□□□□□ -0.32
RNF40-204ENST00000563683 ANTXR1Q9H6X2 564 aa13.03□□□□□ -0.32
RNF40-204ENST00000563683 CLASP1Q7Z460 1538 aa13.03□□□□□ -0.32
RNF40-204ENST00000563683 CD109Q6YHK3 1445 aa13.03□□□□□ -0.32
RNF40-204ENST00000563683 MRE11P49959 708 aa13.03□□□□□ -0.32
RNF40-204ENST00000563683 TRMT2AQ8IZ69 625 aaKnown RBP13.03□□□□□ -0.32
RNF40-204ENST00000563683 ISY1Q9ULR0 285 aaKnown RBP13.03□□□□□ -0.32
RNF40-204ENST00000563683 A2MP01023 1474 aa13.02□□□□□ -0.32
RNF40-204ENST00000563683 LAMC1P11047 1609 aa13.02□□□□□ -0.32
RNF40-204ENST00000563683 ZMYM3Q14202 1370 aa13.02□□□□□ -0.32
RNF40-204ENST00000563683 FSD2A1L4K1 749 aa13.02□□□□□ -0.33
RNF40-204ENST00000563683 IGHDP01880 384 aa13.02□□□□□ -0.33
RNF40-204ENST00000563683 OS9Q13438 667 aaPredicted RBP13.02□□□□□ -0.33
RNF40-204ENST00000563683 FBXO31Q5XUX0 539 aaPredicted RBP13.02□□□□□ -0.33
RNF40-204ENST00000563683 WDR63Q8IWG1 891 aa13.02□□□□□ -0.33
RNF40-204ENST00000563683 EID1Q9Y6B2 187 aa13.02□□□□□ -0.33
RNF40-204ENST00000563683 CARD14Q9BXL6 1004 aa13.02□□□□□ -0.33
RNF40-204ENST00000563683 NOB1Q9ULX3 412 aaKnown RBP13.02□□□□□ -0.33
RNF40-204ENST00000563683 MCM4P33991 863 aa13.01□□□□□ -0.33
RNF40-204ENST00000563683 WAPLQ7Z5K2 1190 aa13.01□□□□□ -0.33
RNF40-204ENST00000563683 DUOX2Q9NRD8 1548 aa13.01□□□□□ -0.33
RNF40-204ENST00000563683 STK31Q9BXU1 1019 aa13.01□□□□□ -0.33
RNF40-204ENST00000563683 PRDM15P57071 1507 aaPredicted RBP13.01□□□□□ -0.33
RNF40-204ENST00000563683 VIRMAQ69YN4 1812 aaKnown RBP13.01□□□□□ -0.33
RNF40-204ENST00000563683 RPGRIP1LQ68CZ1 1315 aa13□□□□□ -0.33
RNF40-204ENST00000563683 RARSP54136 660 aaKnown RBP13□□□□□ -0.33
RNF40-204ENST00000563683 TBC1D32Q96NH3 1257 aa13□□□□□ -0.33
RNF40-204ENST00000563683 C14orf93Q9H972 538 aaKnown RBP13□□□□□ -0.33
RNF40-204ENST00000563683 SPINK5Q9NQ38 1064 aaPredicted RBP13□□□□□ -0.33
RNF40-204ENST00000563683 SEC24BO95487 1268 aa13□□□□□ -0.33
RNF40-204ENST00000563683 NECTIN2Q92692 538 aa13□□□□□ -0.33
RNF40-204ENST00000563683 C1orf115Q9H7X2 142 aa13□□□□□ -0.33
RNF40-204ENST00000563683 CHMP5Q9NZZ3 219 aa13□□□□□ -0.33
RNF40-204ENST00000563683 KIF16BQ96L93 1317 aa12.99□□□□□ -0.33
RNF40-204ENST00000563683 A0A0G2JS52 829 aa12.99□□□□□ -0.33
RNF40-204ENST00000563683 FBLN1P23142 703 aa12.99□□□□□ -0.33
RNF40-204ENST00000563683 ADCY10Q96PN6 1610 aa12.99□□□□□ -0.33
RNF40-204ENST00000563683 EIF2AK4Q9P2K8 1649 aaKnown RBP12.99□□□□□ -0.33
RNF40-204ENST00000563683 TMPOP42166 694 aaKnown RBP12.99□□□□□ -0.33
RNF40-204ENST00000563683 THUMPD2Q9BTF0 503 aaKnown RBP12.99□□□□□ -0.33
RNF40-204ENST00000563683 TBC1D2Q9BYX2 928 aa12.99□□□□□ -0.33
RNF40-204ENST00000563683 ZMYND15Q9H091 742 aa12.98□□□□□ -0.33
RNF40-204ENST00000563683 PIK3C2GO75747 1445 aa12.98□□□□□ -0.33
RNF40-204ENST00000563683 DDX11L8A8MPP1 907 aa12.98□□□□□ -0.33
RNF40-204ENST00000563683 ABCC10Q5T3U5 1492 aa12.98□□□□□ -0.33
RNF40-204ENST00000563683 GNAI1P63096 354 aa12.98□□□□□ -0.33
RNF40-204ENST00000563683 C22orf23Q9BZE7 217 aa12.98□□□□□ -0.33
RNF40-204ENST00000563683 TRAK2O60296 914 aa12.98□□□□□ -0.33
RNF40-204ENST00000563683 MVPQ14764 893 aaKnown RBP12.97□□□□□ -0.33
RNF40-204ENST00000563683 ATF7IPQ6VMQ6 1270 aa12.97□□□□□ -0.33
RNF40-204ENST00000563683 RRS1Q15050 365 aaKnown RBP12.97□□□□□ -0.33
RNF40-204ENST00000563683 NUTM2GQ5VZR2 741 aa12.96□□□□□ -0.33
RNF40-204ENST00000563683 TRIM6-TRIM34B2RNG4 842 aa12.96□□□□□ -0.34
RNF40-204ENST00000563683 SSH1Q8WYL5 1049 aa12.95□□□□□ -0.34
RNF40-204ENST00000563683 NOL8Q76FK4 1167 aaKnown RBP12.95□□□□□ -0.34
RNF40-204ENST00000563683 ESPNB1AK53 854 aa12.95□□□□□ -0.34
RNF40-204ENST00000563683 GBP4Q96PP9 640 aa12.95□□□□□ -0.34
RNF40-204ENST00000563683 NLRP1Q9C000 1473 aa12.95□□□□□ -0.34
RNF40-204ENST00000563683 ABCC2Q92887 1545 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms