RNA–Protein interactions for RNA: ENST00000563672.5

CMTM3-206, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 4

Gene CMTM3, Length 460 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-206ENST00000563672 TRAK1Q9UPV9 953 aa29.26■■■□□ 2.27
CMTM3-206ENST00000563672 CDC42BPGQ6DT37 1551 aa29.24■■■□□ 2.27
CMTM3-206ENST00000563672 NBPF1Q3BBV0 1214 aa29.22■■■□□ 2.27
CMTM3-206ENST00000563672 POGKQ9P215 609 aa29.22■■■□□ 2.27
CMTM3-206ENST00000563672 KIAA1210Q9ULL0 1709 aa29.21■■■□□ 2.27
CMTM3-206ENST00000563672 AHDC1Q5TGY3 1603 aaPredicted RBP29.2■■■□□ 2.26
CMTM3-206ENST00000563672 SAFB2Q14151 953 aaKnown RBP eCLIP29.19■■■□□ 2.26
CMTM3-206ENST00000563672 ORAI2Q96SN7 254 aa29.18■■■□□ 2.26
CMTM3-206ENST00000563672 PHLPP1O60346 1717 aa29.17■■■□□ 2.26
CMTM3-206ENST00000563672 COL16A1Q07092 1604 aaPredicted RBP29.15■■■□□ 2.26
CMTM3-206ENST00000563672 TONSLQ96HA7 1378 aa29.13■■■□□ 2.25
CMTM3-206ENST00000563672 NUTM2FA1L443 756 aa29.12■■■□□ 2.25
CMTM3-206ENST00000563672 ESCO1Q5FWF5 840 aa29.11■■■□□ 2.25
CMTM3-206ENST00000563672 DDX17Q92841 729 aaKnown RBP29.11■■■□□ 2.25
CMTM3-206ENST00000563672 JCADQ9P266 1359 aa29.11■■■□□ 2.25
CMTM3-206ENST00000563672 NBPF8Q3BBV2 869 aa29.1■■■□□ 2.25
CMTM3-206ENST00000563672 DISP3Q9P2K9 1392 aa29.1■■■□□ 2.25
CMTM3-206ENST00000563672 NHSL1Q5SYE7 1610 aa29.09■■■□□ 2.25
CMTM3-206ENST00000563672 MINK1Q8N4C8 1332 aaPredicted RBP29.09■■■□□ 2.25
CMTM3-206ENST00000563672 FMN2Q9NZ56 1722 aa29.08■■■□□ 2.25
CMTM3-206ENST00000563672 ADGRB2O60241 1585 aa29.08■■■□□ 2.25
CMTM3-206ENST00000563672 ARHGEF28Q8N1W1 1705 aaKnown RBP29.08■■■□□ 2.25
CMTM3-206ENST00000563672 MED1Q15648 1581 aaPredicted RBP29.07■■■□□ 2.24
CMTM3-206ENST00000563672 HIRIP3Q9BW71 556 aaPredicted RBP29.07■■■□□ 2.24
CMTM3-206ENST00000563672 CLSPNQ9HAW4 1339 aa29.06■■■□□ 2.24
CMTM3-206ENST00000563672 TRPM1Q7Z4N2 1603 aa29.05■■■□□ 2.24
CMTM3-206ENST00000563672 SOS2Q07890 1332 aaPredicted RBP29.04■■■□□ 2.24
CMTM3-206ENST00000563672 WASLO00401 505 aaPredicted RBP29.04■■■□□ 2.24
CMTM3-206ENST00000563672 LRRC59Q96AG4 307 aaKnown RBP29.04■■■□□ 2.24
CMTM3-206ENST00000563672 ROCK2O75116 1388 aaKnown RBP29.02■■■□□ 2.24
CMTM3-206ENST00000563672 FOXO3O43524 673 aa29.01■■■□□ 2.23
CMTM3-206ENST00000563672 ANKARQ7Z5J8 1434 aa29.01■■■□□ 2.23
CMTM3-206ENST00000563672 NPHP3Q7Z494 1330 aa29■■■□□ 2.23
CMTM3-206ENST00000563672 GPRASP1Q5JY77 1395 aa29■■■□□ 2.23
CMTM3-206ENST00000563672 SPATA31A6Q5VVP1 1343 aa28.98■■■□□ 2.23
CMTM3-206ENST00000563672 CENPJQ9HC77 1338 aaPredicted RBP28.98■■■□□ 2.23
CMTM3-206ENST00000563672 EIF3AQ14152 1382 aaKnown RBP28.98■■■□□ 2.23
CMTM3-206ENST00000563672 PHF8Q9UPP1 1060 aa28.97■■■□□ 2.23
CMTM3-206ENST00000563672 PRR36Q9H6K5 1346 aa28.96■■■□□ 2.23
CMTM3-206ENST00000563672 SHPRHQ149N8 1683 aa28.96■■■□□ 2.23
CMTM3-206ENST00000563672 PXDNQ92626 1479 aa28.95■■■□□ 2.22
CMTM3-206ENST00000563672 TULP4Q9NRJ4 1543 aa28.94■■■□□ 2.22
CMTM3-206ENST00000563672 USP32Q8NFA0 1604 aa28.94■■■□□ 2.22
CMTM3-206ENST00000563672 RALGAPBQ86X10 1494 aa28.93■■■□□ 2.22
CMTM3-206ENST00000563672 PNPLA6Q8IY17 1366 aa28.93■■■□□ 2.22
CMTM3-206ENST00000563672 CDK19Q9BWU1 502 aa28.93■■■□□ 2.22
CMTM3-206ENST00000563672 TIMELESSQ9UNS1 1208 aa28.93■■■□□ 2.22
CMTM3-206ENST00000563672 KIF1AQ12756 1690 aa28.93■■■□□ 2.22
CMTM3-206ENST00000563672 XPCQ01831 940 aaPredicted RBP28.92■■■□□ 2.22
CMTM3-206ENST00000563672 RGPD8O14715 1765 aaPredicted RBP28.91■■■□□ 2.22
CMTM3-206ENST00000563672 CCER1Q8TC90 406 aaPredicted RBP28.9■■■□□ 2.22
CMTM3-206ENST00000563672 CARD11Q9BXL7 1154 aa28.9■■■□□ 2.22
CMTM3-206ENST00000563672 KRT28Q7Z3Y7 464 aa28.89■■■□□ 2.22
CMTM3-206ENST00000563672 PMFBP1Q8TBY8 1022 aa28.89■■■□□ 2.22
CMTM3-206ENST00000563672 NUDT16Q96DE0 195 aaKnown RBP28.89■■■□□ 2.22
CMTM3-206ENST00000563672 PHF23Q9BUL5 403 aaPredicted RBP28.89■■■□□ 2.22
CMTM3-206ENST00000563672 LRP6O75581 1613 aa28.88■■■□□ 2.21
CMTM3-206ENST00000563672 ATP7BP35670 1465 aa28.87■■■□□ 2.21
CMTM3-206ENST00000563672 RGS17Q9UGC6 210 aaPredicted RBP28.85■■■□□ 2.21
CMTM3-206ENST00000563672 NUTM2BA6NNL0 878 aaPredicted RBP28.84■■■□□ 2.21
CMTM3-206ENST00000563672 NUTM2EB1AL46 878 aaPredicted RBP28.84■■■□□ 2.21
CMTM3-206ENST00000563672 NUTM2AQ8IVF1 878 aaPredicted RBP28.84■■■□□ 2.21
CMTM3-206ENST00000563672 PSME1Q06323 249 aa28.83■■■□□ 2.21
CMTM3-206ENST00000563672 ILDR2Q71H61 639 aa28.83■■■□□ 2.21
CMTM3-206ENST00000563672 SPATA31A3Q5VYP0 1347 aa28.83■■■□□ 2.21
CMTM3-206ENST00000563672 QRICH2Q9H0J4 1663 aa28.83■■■□□ 2.21
CMTM3-206ENST00000563672 CCDC61Q9Y6R9 512 aa28.82■■■□□ 2.2
CMTM3-206ENST00000563672 SRPK2P78362 688 aaKnown RBP28.8■■■□□ 2.2
CMTM3-206ENST00000563672 SBNO1A3KN83 1393 aa28.79■■■□□ 2.2
CMTM3-206ENST00000563672 MEX3CQ5U5Q3 659 aaKnown RBP28.79■■■□□ 2.2
CMTM3-206ENST00000563672 CABP2Q9NPB3 220 aa28.79■■■□□ 2.2
CMTM3-206ENST00000563672 EVC2Q86UK5 1308 aa28.78■■■□□ 2.2
CMTM3-206ENST00000563672 PLEKHG3A1L390 1219 aa28.78■■■□□ 2.2
CMTM3-206ENST00000563672 NGDNQ8NEJ9 315 aaKnown RBP28.78■■■□□ 2.2
CMTM3-206ENST00000563672 COL22A1Q8NFW1 1626 aaPredicted RBP28.77■■■□□ 2.2
CMTM3-206ENST00000563672 SBNO2Q9Y2G9 1366 aa28.76■■■□□ 2.2
CMTM3-206ENST00000563672 TNS3Q68CZ2 1445 aa28.76■■■□□ 2.19
CMTM3-206ENST00000563672 ITSN1Q15811 1721 aa28.74■■■□□ 2.19
CMTM3-206ENST00000563672 POLR3AO14802 1390 aaPredicted RBP28.74■■■□□ 2.19
CMTM3-206ENST00000563672 TOPAZ1Q8N9V7 1692 aa28.73■■■□□ 2.19
CMTM3-206ENST00000563672 ACEP12821 1306 aa28.72■■■□□ 2.19
CMTM3-206ENST00000563672 ADAMTS2O95450 1211 aa28.7■■■□□ 2.18
CMTM3-206ENST00000563672 POTEAQ6S8J7 498 aa28.7■■■□□ 2.18
CMTM3-206ENST00000563672 ARHGEF10O15013 1369 aa28.7■■■□□ 2.18
CMTM3-206ENST00000563672 PPIP5K1Q6PFW1 1433 aa28.69■■■□□ 2.18
CMTM3-206ENST00000563672 CABP1Q9NZU7 370 aa28.68■■■□□ 2.18
CMTM3-206ENST00000563672 TRPM3Q9HCF6 1732 aaPredicted RBP28.68■■■□□ 2.18
CMTM3-206ENST00000563672 ST20-MTHFSA0A0A6YYL1 179 aa28.67■■■□□ 2.18
CMTM3-206ENST00000563672 LMOD2Q6P5Q4 547 aa28.67■■■□□ 2.18
CMTM3-206ENST00000563672 ZNF772Q68DY9 489 aaPredicted RBP28.66■■■□□ 2.18
CMTM3-206ENST00000563672 C8orf37Q96NL8 207 aa28.66■■■□□ 2.18
CMTM3-206ENST00000563672 TESK2Q96S53 571 aa28.66■■■□□ 2.18
CMTM3-206ENST00000563672 AFF2P51816 1311 aa28.64■■■□□ 2.17
CMTM3-206ENST00000563672 PAK3O75914 559 aaPredicted RBP28.63■■■□□ 2.17
CMTM3-206ENST00000563672 NGLY1Q96IV0 654 aa28.63■■■□□ 2.17
CMTM3-206ENST00000563672 CABLES1Q8TDN4 633 aa28.62■■■□□ 2.17
CMTM3-206ENST00000563672 ATAD2Q6PL18 1390 aa28.62■■■□□ 2.17
CMTM3-206ENST00000563672 USP47Q96K76 1375 aa28.62■■■□□ 2.17
CMTM3-206ENST00000563672 ALS2Q96Q42 1657 aa28.61■■■□□ 2.17
CMTM3-206ENST00000563672 FNBP4Q8N3X1 1017 aaPredicted RBP28.6■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms