RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 SIRT1Q96EB6 747 aa14.12□□□□□ -0.15
SMG1-208ENST00000563448 POGKQ9P215 609 aa14.12□□□□□ -0.15
SMG1-208ENST00000563448 ROBO2Q9HCK4 1378 aa14.11□□□□□ -0.15
SMG1-208ENST00000563448 AMOTL2Q9Y2J4 779 aa14.11□□□□□ -0.15
SMG1-208ENST00000563448 STRCP1A6NGW2 1772 aa14.1□□□□□ -0.15
SMG1-208ENST00000563448 NWD1Q149M9 1564 aa14.1□□□□□ -0.15
SMG1-208ENST00000563448 PTCH1Q13635 1447 aa14.1□□□□□ -0.15
SMG1-208ENST00000563448 MINK1Q8N4C8 1332 aaPredicted RBP14.09□□□□□ -0.15
SMG1-208ENST00000563448 CDCA8Q53HL2 280 aa14.09□□□□□ -0.15
SMG1-208ENST00000563448 ADGRB2O60241 1585 aa14.08□□□□□ -0.15
SMG1-208ENST00000563448 EVC2Q86UK5 1308 aa14.07□□□□□ -0.16
SMG1-208ENST00000563448 KCNA6P17658 529 aa14.06□□□□□ -0.16
SMG1-208ENST00000563448 NALCNQ8IZF0 1738 aa14.06□□□□□ -0.16
SMG1-208ENST00000563448 RGPD8O14715 1765 aaPredicted RBP14.06□□□□□ -0.16
SMG1-208ENST00000563448 PUS7Q96PZ0 661 aaKnown RBP14.05□□□□□ -0.16
SMG1-208ENST00000563448 MIER1Q8N108 512 aa14.04□□□□□ -0.16
SMG1-208ENST00000563448 CABP2Q9NPB3 220 aa14.04□□□□□ -0.16
SMG1-208ENST00000563448 CDK19Q9BWU1 502 aa14.03□□□□□ -0.16
SMG1-208ENST00000563448 XIRP1Q702N8 1843 aaKnown RBP14.02□□□□□ -0.17
SMG1-208ENST00000563448 FMN2Q9NZ56 1722 aa14.02□□□□□ -0.17
SMG1-208ENST00000563448 WASLO00401 505 aaPredicted RBP14.02□□□□□ -0.17
SMG1-208ENST00000563448 SRPK2P78362 688 aaKnown RBP14.02□□□□□ -0.17
SMG1-208ENST00000563448 PANK3Q9H999 370 aa14.02□□□□□ -0.17
SMG1-208ENST00000563448 USP32Q8NFA0 1604 aa14.02□□□□□ -0.17
SMG1-208ENST00000563448 TOPAZ1Q8N9V7 1692 aa14.01□□□□□ -0.17
SMG1-208ENST00000563448 ITSN1Q15811 1721 aa14□□□□□ -0.17
SMG1-208ENST00000563448 NKTRP30414 1462 aaKnown RBP14□□□□□ -0.17
SMG1-208ENST00000563448 PER1O15534 1290 aaPredicted RBP14□□□□□ -0.17
SMG1-208ENST00000563448 ATAD2Q6PL18 1390 aa13.99□□□□□ -0.17
SMG1-208ENST00000563448 AKAP12Q02952 1782 aa13.99□□□□□ -0.17
SMG1-208ENST00000563448 SLC12A5Q9H2X9 1139 aa13.98□□□□□ -0.17
SMG1-208ENST00000563448 ANP32CO43423 234 aa13.98□□□□□ -0.17
SMG1-208ENST00000563448 TMC1Q8TDI8 760 aa13.98□□□□□ -0.17
SMG1-208ENST00000563448 ATP7BP35670 1465 aa13.98□□□□□ -0.17
SMG1-208ENST00000563448 CDC42BPGQ6DT37 1551 aa13.98□□□□□ -0.17
SMG1-208ENST00000563448 NINLQ9Y2I6 1382 aa13.97□□□□□ -0.17
SMG1-208ENST00000563448 RBM33Q96EV2 1170 aaKnown RBP13.97□□□□□ -0.17
SMG1-208ENST00000563448 CD163L1Q9NR16 1453 aa13.96□□□□□ -0.17
SMG1-208ENST00000563448 MON2Q7Z3U7 1717 aa13.96□□□□□ -0.18
SMG1-208ENST00000563448 ADGRL3Q9HAR2 1447 aa13.95□□□□□ -0.18
SMG1-208ENST00000563448 PRR36Q9H6K5 1346 aa13.95□□□□□ -0.18
SMG1-208ENST00000563448 NUDT16Q96DE0 195 aaKnown RBP13.95□□□□□ -0.18
SMG1-208ENST00000563448 ANKRD36BQ8N2N9 1353 aa13.95□□□□□ -0.18
SMG1-208ENST00000563448 CARD14Q9BXL6 1004 aa13.95□□□□□ -0.18
SMG1-208ENST00000563448 KIF20BQ96Q89 1820 aa13.94□□□□□ -0.18
SMG1-208ENST00000563448 PROSER2Q86WR7 435 aaPredicted RBP13.94□□□□□ -0.18
SMG1-208ENST00000563448 PRKRIP1Q9H875 184 aaPredicted RBP13.94□□□□□ -0.18
SMG1-208ENST00000563448 PPIP5K1Q6PFW1 1433 aa13.94□□□□□ -0.18
SMG1-208ENST00000563448 CABP1Q9NZU7 370 aa13.93□□□□□ -0.18
SMG1-208ENST00000563448 ANKRD26Q9UPS8 1709 aa13.93□□□□□ -0.18
SMG1-208ENST00000563448 A0A1W2PP64 1363 aa13.92□□□□□ -0.18
SMG1-208ENST00000563448 KNSTRNQ9Y448 316 aa13.92□□□□□ -0.18
SMG1-208ENST00000563448 DMRT2Q9Y5R5 561 aa13.92□□□□□ -0.18
SMG1-208ENST00000563448 NUTM2FA1L443 756 aa13.91□□□□□ -0.18
SMG1-208ENST00000563448 CNGB1Q14028 1251 aaPredicted RBP13.91□□□□□ -0.18
SMG1-208ENST00000563448 NSD3Q9BZ95 1437 aa13.91□□□□□ -0.18
SMG1-208ENST00000563448 CCDC61Q9Y6R9 512 aa13.91□□□□□ -0.18
SMG1-208ENST00000563448 ZNF335Q9H4Z2 1342 aaPredicted RBP13.91□□□□□ -0.18
SMG1-208ENST00000563448 ANKARQ7Z5J8 1434 aa13.91□□□□□ -0.18
SMG1-208ENST00000563448 AMER1Q5JTC6 1135 aaPredicted RBP13.9□□□□□ -0.18
SMG1-208ENST00000563448 TMEM94Q12767 1356 aa13.9□□□□□ -0.18
SMG1-208ENST00000563448 CPSF1Q10570 1443 aaKnown RBP13.9□□□□□ -0.18
SMG1-208ENST00000563448 NCOA3Q9Y6Q9 1424 aa13.9□□□□□ -0.18
SMG1-208ENST00000563448 LRRC7Q96NW7 1537 aa13.9□□□□□ -0.18
SMG1-208ENST00000563448 TERF2IPQ9NYB0 399 aa13.9□□□□□ -0.18
SMG1-208ENST00000563448 KTN1Q86UP2 1357 aaKnown RBP13.9□□□□□ -0.19
SMG1-208ENST00000563448 NRKQ7Z2Y5 1582 aa13.89□□□□□ -0.19
SMG1-208ENST00000563448 CC2D1BQ5T0F9 858 aaKnown RBP13.89□□□□□ -0.19
SMG1-208ENST00000563448 NPC1L1Q9UHC9 1359 aa13.89□□□□□ -0.19
SMG1-208ENST00000563448 PARD3Q8TEW0 1356 aa13.88□□□□□ -0.19
SMG1-208ENST00000563448 C14orf37Q86TY3 774 aa13.88□□□□□ -0.19
SMG1-208ENST00000563448 PLEKHG3A1L390 1219 aa13.88□□□□□ -0.19
SMG1-208ENST00000563448 HDGFL2Q7Z4V5 671 aaPredicted RBP13.88□□□□□ -0.19
SMG1-208ENST00000563448 CCER2I3L3R5 266 aa13.87□□□□□ -0.19
SMG1-208ENST00000563448 RALBP1Q15311 655 aa13.86□□□□□ -0.19
SMG1-208ENST00000563448 C19orf44Q9H6X5 657 aa13.86□□□□□ -0.19
SMG1-208ENST00000563448 DCCP43146 1447 aa13.85□□□□□ -0.19
SMG1-208ENST00000563448 ACEP12821 1306 aa13.85□□□□□ -0.19
SMG1-208ENST00000563448 PMFBP1Q8TBY8 1022 aa13.84□□□□□ -0.19
SMG1-208ENST00000563448 CGNL1Q0VF96 1302 aa13.84□□□□□ -0.19
SMG1-208ENST00000563448 LTBP4Q8N2S1 1624 aa13.84□□□□□ -0.19
SMG1-208ENST00000563448 POLR3AO14802 1390 aaPredicted RBP13.84□□□□□ -0.19
SMG1-208ENST00000563448 KIF1AQ12756 1690 aa13.84□□□□□ -0.19
SMG1-208ENST00000563448 EDC4Q6P2E9 1401 aaKnown RBP13.84□□□□□ -0.19
SMG1-208ENST00000563448 CCDC184Q52MB2 194 aa13.83□□□□□ -0.2
SMG1-208ENST00000563448 ZNF692Q9BU19 519 aaPredicted RBP13.83□□□□□ -0.2
SMG1-208ENST00000563448 MYBBP1AQ9BQG0 1328 aaKnown RBP13.83□□□□□ -0.2
SMG1-208ENST00000563448 MST1RQ04912 1400 aa13.82□□□□□ -0.2
SMG1-208ENST00000563448 MAP2P11137 1827 aaKnown RBP13.82□□□□□ -0.2
SMG1-208ENST00000563448 NSD2O96028 1365 aa13.82□□□□□ -0.2
SMG1-208ENST00000563448 MSH6P52701 1360 aa13.82□□□□□ -0.2
SMG1-208ENST00000563448 USP6P35125 1406 aa13.82□□□□□ -0.2
SMG1-208ENST00000563448 C1orf167Q5SNV9 1468 aa13.82□□□□□ -0.2
SMG1-208ENST00000563448 FYB1O15117 783 aa13.81□□□□□ -0.2
SMG1-208ENST00000563448 ATF3P18847 181 aa13.81□□□□□ -0.2
SMG1-208ENST00000563448 SSH2Q76I76 1423 aa13.81□□□□□ -0.2
SMG1-208ENST00000563448 MARF1Q9Y4F3 1742 aaKnown RBP13.8□□□□□ -0.2
SMG1-208ENST00000563448 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.8□□□□□ -0.2
SMG1-208ENST00000563448 PHF8Q9UPP1 1060 aa13.8□□□□□ -0.2
SMG1-208ENST00000563448 PIK3C2AO00443 1686 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 267.2 ms