RNA–Protein interactions for RNA: ENST00000563343.5

HERPUD1-206, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 4

Gene HERPUD1, Length 567 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-206ENST00000563343 BLMP54132 1417 aaPredicted RBP12.17□□□□□ -0.46
HERPUD1-206ENST00000563343 POTEDQ86YR6 584 aa12.15□□□□□ -0.46
HERPUD1-206ENST00000563343 CNKSR2Q8WXI2 1034 aa12.15□□□□□ -0.46
HERPUD1-206ENST00000563343 ORAI2Q96SN7 254 aa12.15□□□□□ -0.46
HERPUD1-206ENST00000563343 PXDNQ92626 1479 aa12.14□□□□□ -0.47
HERPUD1-206ENST00000563343 PRAG1Q86YV5 1406 aa12.14□□□□□ -0.47
HERPUD1-206ENST00000563343 NCBP3Q53F19 620 aaKnown RBP12.14□□□□□ -0.47
HERPUD1-206ENST00000563343 DEFB132Q7Z7B7 95 aa12.13□□□□□ -0.47
HERPUD1-206ENST00000563343 GJD4Q96KN9 370 aaPredicted RBP12.13□□□□□ -0.47
HERPUD1-206ENST00000563343 KIF1BO60333 1816 aa12.13□□□□□ -0.47
HERPUD1-206ENST00000563343 RALGAPBQ86X10 1494 aa12.13□□□□□ -0.47
HERPUD1-206ENST00000563343 SLIT2O94813 1529 aa12.12□□□□□ -0.47
HERPUD1-206ENST00000563343 CLTCL1P53675 1640 aa12.12□□□□□ -0.47
HERPUD1-206ENST00000563343 PLCH1Q4KWH8 1693 aa12.11□□□□□ -0.47
HERPUD1-206ENST00000563343 CDC42BPGQ6DT37 1551 aa12.11□□□□□ -0.47
HERPUD1-206ENST00000563343 NWD2Q9ULI1 1742 aa12.11□□□□□ -0.47
HERPUD1-206ENST00000563343 USP32Q8NFA0 1604 aa12.11□□□□□ -0.47
HERPUD1-206ENST00000563343 ROBO2Q9HCK4 1378 aa12.1□□□□□ -0.47
HERPUD1-206ENST00000563343 ABCA3Q99758 1704 aa12.1□□□□□ -0.47
HERPUD1-206ENST00000563343 RGPD1P0DJD0 1748 aa12.07□□□□□ -0.48
HERPUD1-206ENST00000563343 PPLO60437 1756 aa12.07□□□□□ -0.48
HERPUD1-206ENST00000563343 TNS1Q9HBL0 1735 aaKnown RBP12.06□□□□□ -0.48
HERPUD1-206ENST00000563343 RGPD8O14715 1765 aaPredicted RBP12.06□□□□□ -0.48
HERPUD1-206ENST00000563343 LOC105371045A0A1W2PR82 267 aa12.06□□□□□ -0.48
HERPUD1-206ENST00000563343 HRCP23327 699 aa12.06□□□□□ -0.48
HERPUD1-206ENST00000563343 UNC5CLQ8IV45 518 aa12.06□□□□□ -0.48
HERPUD1-206ENST00000563343 NRAPQ86VF7 1730 aa12.06□□□□□ -0.48
HERPUD1-206ENST00000563343 ROCK1Q13464 1354 aa12.05□□□□□ -0.48
HERPUD1-206ENST00000563343 FMN2Q9NZ56 1722 aa12.05□□□□□ -0.48
HERPUD1-206ENST00000563343 NPHP3Q7Z494 1330 aa12.05□□□□□ -0.48
HERPUD1-206ENST00000563343 NUP155O75694 1391 aa12.05□□□□□ -0.48
HERPUD1-206ENST00000563343 HFM1A2PYH4 1435 aa12.04□□□□□ -0.48
HERPUD1-206ENST00000563343 KIF1AQ12756 1690 aa12.04□□□□□ -0.48
HERPUD1-206ENST00000563343 PSDA5PKW4 1024 aaPredicted RBP12.04□□□□□ -0.48
HERPUD1-206ENST00000563343 KCNA4P22459 653 aa12.04□□□□□ -0.48
HERPUD1-206ENST00000563343 ONECUT3O60422 494 aaPredicted RBP12.03□□□□□ -0.48
HERPUD1-206ENST00000563343 FAM50AQ14320 339 aaKnown RBP12.03□□□□□ -0.48
HERPUD1-206ENST00000563343 ZNF326Q5BKZ1 582 aaKnown RBP12.03□□□□□ -0.48
HERPUD1-206ENST00000563343 XPCQ01831 940 aaPredicted RBP12.02□□□□□ -0.49
HERPUD1-206ENST00000563343 SEPT12Q8IYM1 358 aa12.02□□□□□ -0.49
HERPUD1-206ENST00000563343 KNDC1Q76NI1 1749 aa12.02□□□□□ -0.49
HERPUD1-206ENST00000563343 FOXO3O43524 673 aa12.01□□□□□ -0.49
HERPUD1-206ENST00000563343 SF3B2Q13435 895 aaKnown RBP12.01□□□□□ -0.49
HERPUD1-206ENST00000563343 ESCO1Q5FWF5 840 aa12.01□□□□□ -0.49
HERPUD1-206ENST00000563343 IFT172Q9UG01 1749 aa12□□□□□ -0.49
HERPUD1-206ENST00000563343 APLP2Q06481 763 aa12□□□□□ -0.49
HERPUD1-206ENST00000563343 VPS72Q15906 364 aa11.99□□□□□ -0.49
HERPUD1-206ENST00000563343 SPATA31A3Q5VYP0 1347 aa11.99□□□□□ -0.49
HERPUD1-206ENST00000563343 NAIPQ13075 1403 aa11.99□□□□□ -0.49
HERPUD1-206ENST00000563343 RREB1Q92766 1687 aa11.98□□□□□ -0.49
HERPUD1-206ENST00000563343 DISP2A7MBM2 1401 aa11.98□□□□□ -0.49
HERPUD1-206ENST00000563343 THSD7AQ9UPZ6 1657 aa11.97□□□□□ -0.49
HERPUD1-206ENST00000563343 LRPPRCP42704 1394 aaKnown RBP11.97□□□□□ -0.49
HERPUD1-206ENST00000563343 BAG6P46379 1132 aa11.97□□□□□ -0.49
HERPUD1-206ENST00000563343 KRT27Q7Z3Y8 459 aa11.97□□□□□ -0.49
HERPUD1-206ENST00000563343 TECPR2O15040 1411 aa11.96□□□□□ -0.49
HERPUD1-206ENST00000563343 CRYBG1Q9Y4K1 1723 aa11.96□□□□□ -0.49
HERPUD1-206ENST00000563343 CCDC144AA2RUR9 1427 aa11.95□□□□□ -0.5
HERPUD1-206ENST00000563343 NUP188Q5SRE5 1749 aa11.95□□□□□ -0.5
HERPUD1-206ENST00000563343 EN1Q05925 392 aaPredicted RBP11.95□□□□□ -0.5
HERPUD1-206ENST00000563343 RNF216Q9NWF9 866 aaPredicted RBP11.95□□□□□ -0.5
HERPUD1-206ENST00000563343 TNS3Q68CZ2 1445 aa11.94□□□□□ -0.5
HERPUD1-206ENST00000563343 TRPM3Q9HCF6 1732 aaPredicted RBP11.94□□□□□ -0.5
HERPUD1-206ENST00000563343 VGFO15240 615 aaPredicted RBP11.94□□□□□ -0.5
HERPUD1-206ENST00000563343 R3HDM1Q15032 1099 aaKnown RBP11.94□□□□□ -0.5
HERPUD1-206ENST00000563343 COL14A1Q05707 1796 aaKnown RBP11.94□□□□□ -0.5
HERPUD1-206ENST00000563343 HOXD11P31277 338 aaPredicted RBP11.93□□□□□ -0.5
HERPUD1-206ENST00000563343 ALS2Q96Q42 1657 aa11.93□□□□□ -0.5
HERPUD1-206ENST00000563343 NUTM2FA1L443 756 aa11.92□□□□□ -0.5
HERPUD1-206ENST00000563343 NPM3O75607 178 aaKnown RBP11.92□□□□□ -0.5
HERPUD1-206ENST00000563343 YY1P25490 414 aa11.92□□□□□ -0.5
HERPUD1-206ENST00000563343 CABLES1Q8TDN4 633 aa11.92□□□□□ -0.5
HERPUD1-206ENST00000563343 ADGRB2O60241 1585 aa11.92□□□□□ -0.5
HERPUD1-206ENST00000563343 PLEKHH1Q9ULM0 1364 aa11.92□□□□□ -0.5
HERPUD1-206ENST00000563343 CAMTA1Q9Y6Y1 1673 aa11.91□□□□□ -0.5
HERPUD1-206ENST00000563343 KRT28Q7Z3Y7 464 aa11.91□□□□□ -0.5
HERPUD1-206ENST00000563343 WAPLQ7Z5K2 1190 aa11.91□□□□□ -0.5
HERPUD1-206ENST00000563343 RPGRIP1LQ68CZ1 1315 aa11.9□□□□□ -0.5
HERPUD1-206ENST00000563343 NRXN1Q9ULB1 1477 aa11.9□□□□□ -0.5
HERPUD1-206ENST00000563343 FAM83GA6ND36 823 aa11.89□□□□□ -0.51
HERPUD1-206ENST00000563343 EZH2Q15910 746 aaKnown RBP11.89□□□□□ -0.51
HERPUD1-206ENST00000563343 FAM98CQ17RN3 349 aaKnown RBP11.89□□□□□ -0.51
HERPUD1-206ENST00000563343 FAM182BQ5T319 152 aa11.89□□□□□ -0.51
HERPUD1-206ENST00000563343 CCDC9Q9Y3X0 531 aaKnown RBP11.89□□□□□ -0.51
HERPUD1-206ENST00000563343 SBNO1A3KN83 1393 aa11.89□□□□□ -0.51
HERPUD1-206ENST00000563343 ABCC11Q96J66 1382 aa11.88□□□□□ -0.51
HERPUD1-206ENST00000563343 CAMKK2Q96RR4 588 aa11.87□□□□□ -0.51
HERPUD1-206ENST00000563343 ADGRF5Q8IZF2 1346 aa11.86□□□□□ -0.51
HERPUD1-206ENST00000563343 RRBP1Q9P2E9 1410 aaKnown RBP11.86□□□□□ -0.51
HERPUD1-206ENST00000563343 ARHGEF10O15013 1369 aa11.85□□□□□ -0.51
HERPUD1-206ENST00000563343 HAP1P54257 671 aaPredicted RBP11.85□□□□□ -0.51
HERPUD1-206ENST00000563343 PHF8Q9UPP1 1060 aa11.85□□□□□ -0.51
HERPUD1-206ENST00000563343 SPATA31A5Q5VU36 1347 aa11.85□□□□□ -0.51
HERPUD1-206ENST00000563343 SPATA31A7Q8IWB4 1347 aa11.85□□□□□ -0.51
HERPUD1-206ENST00000563343 CASZ1Q86V15 1759 aa11.84□□□□□ -0.51
HERPUD1-206ENST00000563343 PARD3Q8TEW0 1356 aa11.84□□□□□ -0.51
HERPUD1-206ENST00000563343 A0A0G2JS52 829 aa11.84□□□□□ -0.51
HERPUD1-206ENST00000563343 MYT1Q01538 1121 aa11.84□□□□□ -0.51
HERPUD1-206ENST00000563343 BTG4Q9NY30 223 aa11.84□□□□□ -0.51
HERPUD1-206ENST00000563343 STK26Q9P289 416 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms