RNA–Protein interactions for RNA: ENST00000563207.1

USB1-208, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 5

Gene USB1, Length 464 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-208ENST00000563207 LRRC59Q96AG4 307 aaKnown RBP23.07■■□□□ 1.28
USB1-208ENST00000563207 LAMC1P11047 1609 aa23.05■■□□□ 1.28
USB1-208ENST00000563207 NUTM2FA1L443 756 aa23.05■■□□□ 1.28
USB1-208ENST00000563207 LRPPRCP42704 1394 aaKnown RBP23.04■■□□□ 1.28
USB1-208ENST00000563207 TECPR2O15040 1411 aa23.02■■□□□ 1.28
USB1-208ENST00000563207 CFAP70Q5T0N1 1121 aa23.02■■□□□ 1.28
USB1-208ENST00000563207 SOS2Q07890 1332 aaPredicted RBP23.02■■□□□ 1.28
USB1-208ENST00000563207 CDC42BPGQ6DT37 1551 aa23.01■■□□□ 1.27
USB1-208ENST00000563207 KNDC1Q76NI1 1749 aa23.01■■□□□ 1.27
USB1-208ENST00000563207 AFF2P51816 1311 aa23.01■■□□□ 1.27
USB1-208ENST00000563207 YTHDC2Q9H6S0 1430 aaKnown RBP23■■□□□ 1.27
USB1-208ENST00000563207 XPCQ01831 940 aaPredicted RBP23■■□□□ 1.27
USB1-208ENST00000563207 ESCO1Q5FWF5 840 aa23■■□□□ 1.27
USB1-208ENST00000563207 ZNF772Q68DY9 489 aaPredicted RBP23■■□□□ 1.27
USB1-208ENST00000563207 ABCC11Q96J66 1382 aa23■■□□□ 1.27
USB1-208ENST00000563207 C8orf37Q96NL8 207 aa22.99■■□□□ 1.27
USB1-208ENST00000563207 C14orf93Q9H972 538 aaKnown RBP22.99■■□□□ 1.27
USB1-208ENST00000563207 NRXN1Q9ULB1 1477 aa22.98■■□□□ 1.27
USB1-208ENST00000563207 ADAMTS2O95450 1211 aa22.98■■□□□ 1.27
USB1-208ENST00000563207 RGPD8O14715 1765 aaPredicted RBP22.95■■□□□ 1.26
USB1-208ENST00000563207 FOXO3O43524 673 aa22.95■■□□□ 1.26
USB1-208ENST00000563207 MYOM2P54296 1465 aa22.95■■□□□ 1.26
USB1-208ENST00000563207 FMN2Q9NZ56 1722 aa22.94■■□□□ 1.26
USB1-208ENST00000563207 PXDNQ92626 1479 aa22.94■■□□□ 1.26
USB1-208ENST00000563207 SAFB2Q14151 953 aaKnown RBP eCLIP22.93■■□□□ 1.26
USB1-208ENST00000563207 RXRBP28702 533 aa22.92■■□□□ 1.26
USB1-208ENST00000563207 KDM2AQ9Y2K7 1162 aa22.91■■□□□ 1.26
USB1-208ENST00000563207 PCGF6Q9BYE7 350 aa22.9■■□□□ 1.26
USB1-208ENST00000563207 COL22A1Q8NFW1 1626 aaPredicted RBP22.9■■□□□ 1.26
USB1-208ENST00000563207 NGLY1Q96IV0 654 aa22.89■■□□□ 1.25
USB1-208ENST00000563207 PRAM1Q96QH2 718 aa22.89■■□□□ 1.25
USB1-208ENST00000563207 QTRT2Q9H974 415 aaKnown RBP22.89■■□□□ 1.25
USB1-208ENST00000563207 NPHP3Q7Z494 1330 aa22.88■■□□□ 1.25
USB1-208ENST00000563207 DHX57Q6P158 1386 aaKnown RBP22.88■■□□□ 1.25
USB1-208ENST00000563207 DCAF11Q8TEB1 546 aa22.87■■□□□ 1.25
USB1-208ENST00000563207 SIRT1Q96EB6 747 aa22.87■■□□□ 1.25
USB1-208ENST00000563207 ADGRB1O14514 1584 aa22.87■■□□□ 1.25
USB1-208ENST00000563207 UPF1Q92900 1129 aaKnown RBP eCLIP22.85■■□□□ 1.25
USB1-208ENST00000563207 TRAK1Q9UPV9 953 aa22.84■■□□□ 1.25
USB1-208ENST00000563207 RGS12O14924 1447 aa22.83■■□□□ 1.25
USB1-208ENST00000563207 USP32Q8NFA0 1604 aa22.82■■□□□ 1.24
USB1-208ENST00000563207 KRT28Q7Z3Y7 464 aa22.81■■□□□ 1.24
USB1-208ENST00000563207 HIRIP3Q9BW71 556 aaPredicted RBP22.81■■□□□ 1.24
USB1-208ENST00000563207 USP21Q9UK80 565 aa22.81■■□□□ 1.24
USB1-208ENST00000563207 MARF1Q9Y4F3 1742 aaKnown RBP22.81■■□□□ 1.24
USB1-208ENST00000563207 KIF1AQ12756 1690 aa22.81■■□□□ 1.24
USB1-208ENST00000563207 CDK12Q9NYV4 1490 aaPredicted RBP22.8■■□□□ 1.24
USB1-208ENST00000563207 RBM6P78332 1123 aaKnown RBP22.8■■□□□ 1.24
USB1-208ENST00000563207 POGKQ9P215 609 aa22.8■■□□□ 1.24
USB1-208ENST00000563207 DLC1Q96QB1 1528 aa22.8■■□□□ 1.24
USB1-208ENST00000563207 PLEKHG5O94827 1062 aa22.79■■□□□ 1.24
USB1-208ENST00000563207 FNBP4Q8N3X1 1017 aaPredicted RBP22.79■■□□□ 1.24
USB1-208ENST00000563207 PHF8Q9UPP1 1060 aa22.79■■□□□ 1.24
USB1-208ENST00000563207 SPATA31A3Q5VYP0 1347 aa22.79■■□□□ 1.24
USB1-208ENST00000563207 PMFBP1Q8TBY8 1022 aa22.77■■□□□ 1.24
USB1-208ENST00000563207 MINK1Q8N4C8 1332 aaPredicted RBP22.77■■□□□ 1.24
USB1-208ENST00000563207 CABLES1Q8TDN4 633 aa22.76■■□□□ 1.23
USB1-208ENST00000563207 BCL9LQ86UU0 1499 aa22.76■■□□□ 1.23
USB1-208ENST00000563207 PRR36Q9H6K5 1346 aa22.74■■□□□ 1.23
USB1-208ENST00000563207 ATRNO75882 1429 aa22.74■■□□□ 1.23
USB1-208ENST00000563207 ADGRB2O60241 1585 aa22.73■■□□□ 1.23
USB1-208ENST00000563207 TRPC5Q9UL62 973 aaPredicted RBP22.72■■□□□ 1.23
USB1-208ENST00000563207 ARHGEF28Q8N1W1 1705 aaKnown RBP22.71■■□□□ 1.23
USB1-208ENST00000563207 TNS3Q68CZ2 1445 aa22.7■■□□□ 1.22
USB1-208ENST00000563207 PSME1Q06323 249 aa22.69■■□□□ 1.22
USB1-208ENST00000563207 LMOD2Q6P5Q4 547 aa22.69■■□□□ 1.22
USB1-208ENST00000563207 ABCA3Q99758 1704 aa22.68■■□□□ 1.22
USB1-208ENST00000563207 TRPM3Q9HCF6 1732 aaPredicted RBP22.68■■□□□ 1.22
USB1-208ENST00000563207 ANKARQ7Z5J8 1434 aa22.67■■□□□ 1.22
USB1-208ENST00000563207 WASLO00401 505 aaPredicted RBP22.66■■□□□ 1.22
USB1-208ENST00000563207 NBPF1Q3BBV0 1214 aa22.66■■□□□ 1.22
USB1-208ENST00000563207 SLIT2O94813 1529 aa22.66■■□□□ 1.22
USB1-208ENST00000563207 SBNO1A3KN83 1393 aa22.65■■□□□ 1.22
USB1-208ENST00000563207 TULP4Q9NRJ4 1543 aa22.65■■□□□ 1.22
USB1-208ENST00000563207 GLI3P10071 1580 aa22.63■■□□□ 1.21
USB1-208ENST00000563207 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.63■■□□□ 1.21
USB1-208ENST00000563207 GJD4Q96KN9 370 aaPredicted RBP22.63■■□□□ 1.21
USB1-208ENST00000563207 STAC3Q96MF2 364 aa22.63■■□□□ 1.21
USB1-208ENST00000563207 EP400Q96L91 3159 aa22.62■■□□□ 1.21
USB1-208ENST00000563207 HAP1P54257 671 aaPredicted RBP22.62■■□□□ 1.21
USB1-208ENST00000563207 UNC5CLQ8IV45 518 aa22.62■■□□□ 1.21
USB1-208ENST00000563207 PLCH1Q4KWH8 1693 aa22.62■■□□□ 1.21
USB1-208ENST00000563207 ALS2Q96Q42 1657 aa22.62■■□□□ 1.21
USB1-208ENST00000563207 RALGAPBQ86X10 1494 aa22.6■■□□□ 1.21
USB1-208ENST00000563207 FAM83GA6ND36 823 aa22.59■■□□□ 1.21
USB1-208ENST00000563207 KIAA1210Q9ULL0 1709 aa22.59■■□□□ 1.21
USB1-208ENST00000563207 NUDT16Q96DE0 195 aaKnown RBP22.58■■□□□ 1.21
USB1-208ENST00000563207 SIN3AQ96ST3 1273 aa22.58■■□□□ 1.21
USB1-208ENST00000563207 ARHGEF10O15013 1369 aa22.58■■□□□ 1.21
USB1-208ENST00000563207 ATP7BP35670 1465 aa22.58■■□□□ 1.2
USB1-208ENST00000563207 CLSPNQ9HAW4 1339 aa22.57■■□□□ 1.2
USB1-208ENST00000563207 BRWD3Q6RI45 1802 aa22.57■■□□□ 1.2
USB1-208ENST00000563207 CDK19Q9BWU1 502 aa22.57■■□□□ 1.2
USB1-208ENST00000563207 ATAD2Q6PL18 1390 aa22.56■■□□□ 1.2
USB1-208ENST00000563207 NGDNQ8NEJ9 315 aaKnown RBP22.56■■□□□ 1.2
USB1-208ENST00000563207 GPRASP1Q5JY77 1395 aa22.55■■□□□ 1.2
USB1-208ENST00000563207 CRYBG1Q9Y4K1 1723 aa22.55■■□□□ 1.2
USB1-208ENST00000563207 EIF3AQ14152 1382 aaKnown RBP22.54■■□□□ 1.2
USB1-208ENST00000563207 PAK3O75914 559 aaPredicted RBP22.54■■□□□ 1.2
USB1-208ENST00000563207 ITSN1Q15811 1721 aa22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 120.5 ms