RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 SENP3Q9H4L4 574 aaPredicted RBP19.27■□□□□ 0.68
CLK3-209ENST00000562670 PLEKHH1Q9ULM0 1364 aa19.26■□□□□ 0.67
CLK3-209ENST00000562670 NKTRP30414 1462 aaKnown RBP19.25■□□□□ 0.67
CLK3-209ENST00000562670 ATAD2Q6PL18 1390 aa19.25■□□□□ 0.67
CLK3-209ENST00000562670 AMOTL2Q9Y2J4 779 aa19.24■□□□□ 0.67
CLK3-209ENST00000562670 STRCQ7RTU9 1775 aa19.24■□□□□ 0.67
CLK3-209ENST00000562670 NCKAP5LQ9HCH0 1330 aa19.24■□□□□ 0.67
CLK3-209ENST00000562670 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.22■□□□□ 0.67
CLK3-209ENST00000562670 WAPLQ7Z5K2 1190 aa19.2■□□□□ 0.66
CLK3-209ENST00000562670 POLR3GLQ9BT43 218 aa19.2■□□□□ 0.66
CLK3-209ENST00000562670 MINK1Q8N4C8 1332 aaPredicted RBP19.2■□□□□ 0.66
CLK3-209ENST00000562670 CDC42BPGQ6DT37 1551 aa19.19■□□□□ 0.66
CLK3-209ENST00000562670 KCNA6P17658 529 aa19.18■□□□□ 0.66
CLK3-209ENST00000562670 SAFB2Q14151 953 aaKnown RBP eCLIP19.18■□□□□ 0.66
CLK3-209ENST00000562670 KTN1Q86UP2 1357 aaKnown RBP19.18■□□□□ 0.66
CLK3-209ENST00000562670 USP32Q8NFA0 1604 aa19.18■□□□□ 0.66
CLK3-209ENST00000562670 HSPA2P54652 639 aa19.17■□□□□ 0.66
CLK3-209ENST00000562670 TOPAZ1Q8N9V7 1692 aa19.17■□□□□ 0.66
CLK3-209ENST00000562670 WASLO00401 505 aaPredicted RBP19.16■□□□□ 0.66
CLK3-209ENST00000562670 ANP32CO43423 234 aa19.16■□□□□ 0.66
CLK3-209ENST00000562670 NPC1L1Q9UHC9 1359 aa19.16■□□□□ 0.66
CLK3-209ENST00000562670 ATP7BP35670 1465 aa19.16■□□□□ 0.66
CLK3-209ENST00000562670 NALCNQ8IZF0 1738 aa19.15■□□□□ 0.66
CLK3-209ENST00000562670 PER1O15534 1290 aaPredicted RBP19.15■□□□□ 0.66
CLK3-209ENST00000562670 MIER1Q8N108 512 aa19.15■□□□□ 0.66
CLK3-209ENST00000562670 ANKRD36BQ8N2N9 1353 aa19.15■□□□□ 0.66
CLK3-209ENST00000562670 ADGRL3Q9HAR2 1447 aa19.15■□□□□ 0.66
CLK3-209ENST00000562670 CDK19Q9BWU1 502 aa19.14■□□□□ 0.65
CLK3-209ENST00000562670 NCOA3Q9Y6Q9 1424 aa19.14■□□□□ 0.65
CLK3-209ENST00000562670 SRPK2P78362 688 aaKnown RBP19.13■□□□□ 0.65
CLK3-209ENST00000562670 PANK3Q9H999 370 aa19.13■□□□□ 0.65
CLK3-209ENST00000562670 ANKARQ7Z5J8 1434 aa19.13■□□□□ 0.65
CLK3-209ENST00000562670 ITSN1Q15811 1721 aa19.12■□□□□ 0.65
CLK3-209ENST00000562670 FMN2Q9NZ56 1722 aa19.12■□□□□ 0.65
CLK3-209ENST00000562670 CABP2Q9NPB3 220 aa19.11■□□□□ 0.65
CLK3-209ENST00000562670 CD163L1Q9NR16 1453 aa19.1■□□□□ 0.65
CLK3-209ENST00000562670 PRKRIP1Q9H875 184 aaPredicted RBP19.1■□□□□ 0.65
CLK3-209ENST00000562670 STRCP1A6NGW2 1772 aa19.1■□□□□ 0.65
CLK3-209ENST00000562670 CCER2I3L3R5 266 aa19.09■□□□□ 0.65
CLK3-209ENST00000562670 PARD3Q8TEW0 1356 aa19.08■□□□□ 0.65
CLK3-209ENST00000562670 DCCP43146 1447 aa19.08■□□□□ 0.64
CLK3-209ENST00000562670 DMRT2Q9Y5R5 561 aa19.07■□□□□ 0.64
CLK3-209ENST00000562670 PPIP5K1Q6PFW1 1433 aa19.07■□□□□ 0.64
CLK3-209ENST00000562670 A0A1W2PP64 1363 aa19.06■□□□□ 0.64
CLK3-209ENST00000562670 SLC12A5Q9H2X9 1139 aa19.06■□□□□ 0.64
CLK3-209ENST00000562670 KNSTRNQ9Y448 316 aa19.06■□□□□ 0.64
CLK3-209ENST00000562670 CCDC61Q9Y6R9 512 aa19.06■□□□□ 0.64
CLK3-209ENST00000562670 CPSF1Q10570 1443 aaKnown RBP19.06■□□□□ 0.64
CLK3-209ENST00000562670 NSD3Q9BZ95 1437 aa19.06■□□□□ 0.64
CLK3-209ENST00000562670 NSD2O96028 1365 aa19.06■□□□□ 0.64
CLK3-209ENST00000562670 MON2Q7Z3U7 1717 aa19.05■□□□□ 0.64
CLK3-209ENST00000562670 RALBP1Q15311 655 aa19.05■□□□□ 0.64
CLK3-209ENST00000562670 AMER1Q5JTC6 1135 aaPredicted RBP19.05■□□□□ 0.64
CLK3-209ENST00000562670 TMC1Q8TDI8 760 aa19.05■□□□□ 0.64
CLK3-209ENST00000562670 TERF2IPQ9NYB0 399 aa19.05■□□□□ 0.64
CLK3-209ENST00000562670 AKAP12Q02952 1782 aa19.05■□□□□ 0.64
CLK3-209ENST00000562670 PRR36Q9H6K5 1346 aa19.04■□□□□ 0.64
CLK3-209ENST00000562670 NUDT16Q96DE0 195 aaKnown RBP19.04■□□□□ 0.64
CLK3-209ENST00000562670 CARD14Q9BXL6 1004 aa19.03■□□□□ 0.64
CLK3-209ENST00000562670 NRKQ7Z2Y5 1582 aa19.02■□□□□ 0.63
CLK3-209ENST00000562670 PLEKHG3A1L390 1219 aa19.01■□□□□ 0.63
CLK3-209ENST00000562670 HDGFL2Q7Z4V5 671 aaPredicted RBP19.01■□□□□ 0.63
CLK3-209ENST00000562670 EDC4Q6P2E9 1401 aaKnown RBP19■□□□□ 0.63
CLK3-209ENST00000562670 CABP1Q9NZU7 370 aa19■□□□□ 0.63
CLK3-209ENST00000562670 POLR3AO14802 1390 aaPredicted RBP19■□□□□ 0.63
CLK3-209ENST00000562670 ANKRD26Q9UPS8 1709 aa19■□□□□ 0.63
CLK3-209ENST00000562670 CGNL1Q0VF96 1302 aa19■□□□□ 0.63
CLK3-209ENST00000562670 TMEM94Q12767 1356 aa18.99■□□□□ 0.63
CLK3-209ENST00000562670 PROSER2Q86WR7 435 aaPredicted RBP18.99■□□□□ 0.63
CLK3-209ENST00000562670 LRRC7Q96NW7 1537 aa18.99■□□□□ 0.63
CLK3-209ENST00000562670 MYBBP1AQ9BQG0 1328 aaKnown RBP18.99■□□□□ 0.63
CLK3-209ENST00000562670 XIRP1Q702N8 1843 aaKnown RBP18.97■□□□□ 0.63
CLK3-209ENST00000562670 KIF20BQ96Q89 1820 aa18.97■□□□□ 0.63
CLK3-209ENST00000562670 ZNF692Q9BU19 519 aaPredicted RBP18.96■□□□□ 0.63
CLK3-209ENST00000562670 C19orf44Q9H6X5 657 aa18.96■□□□□ 0.63
CLK3-209ENST00000562670 BRD4O60885 1362 aaPredicted RBP18.95■□□□□ 0.62
CLK3-209ENST00000562670 KIF1AQ12756 1690 aa18.95■□□□□ 0.62
CLK3-209ENST00000562670 RGPD8O14715 1765 aaPredicted RBP18.94■□□□□ 0.62
CLK3-209ENST00000562670 USP6P35125 1406 aa18.94■□□□□ 0.62
CLK3-209ENST00000562670 SSH2Q76I76 1423 aa18.93■□□□□ 0.62
CLK3-209ENST00000562670 NLRP13Q86W25 1043 aa18.93■□□□□ 0.62
CLK3-209ENST00000562670 ZNF335Q9H4Z2 1342 aaPredicted RBP18.93■□□□□ 0.62
CLK3-209ENST00000562670 CC2D1BQ5T0F9 858 aaKnown RBP18.92■□□□□ 0.62
CLK3-209ENST00000562670 MSH6P52701 1360 aa18.92■□□□□ 0.62
CLK3-209ENST00000562670 MST1RQ04912 1400 aa18.91■□□□□ 0.62
CLK3-209ENST00000562670 C1orf167Q5SNV9 1468 aa18.91■□□□□ 0.62
CLK3-209ENST00000562670 C14orf37Q86TY3 774 aa18.91■□□□□ 0.62
CLK3-209ENST00000562670 ACEP12821 1306 aa18.91■□□□□ 0.62
CLK3-209ENST00000562670 USP54Q70EL1 1684 aa18.9■□□□□ 0.62
CLK3-209ENST00000562670 CADPS2Q86UW7 1296 aa18.89■□□□□ 0.61
CLK3-209ENST00000562670 TTC21AQ8NDW8 1320 aa18.88■□□□□ 0.61
CLK3-209ENST00000562670 LTBP4Q8N2S1 1624 aa18.88■□□□□ 0.61
CLK3-209ENST00000562670 RBM33Q96EV2 1170 aaKnown RBP18.87■□□□□ 0.61
CLK3-209ENST00000562670 SCAF1Q9H7N4 1312 aaKnown RBP18.86■□□□□ 0.61
CLK3-209ENST00000562670 FYB1O15117 783 aa18.86■□□□□ 0.61
CLK3-209ENST00000562670 ATF3P18847 181 aa18.86■□□□□ 0.61
CLK3-209ENST00000562670 PHF8Q9UPP1 1060 aa18.86■□□□□ 0.61
CLK3-209ENST00000562670 NUTM2FA1L443 756 aa18.85■□□□□ 0.61
CLK3-209ENST00000562670 PPP2R1AP30153 589 aa18.85■□□□□ 0.61
CLK3-209ENST00000562670 MRS2Q9HD23 443 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms