RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 THAP11Q96EK4 314 aa7.44□□□□□ -1.22
VPS35-203ENST00000562420 SLC27A5Q9Y2P5 690 aa7.44□□□□□ -1.22
VPS35-203ENST00000562420 SPDYE5A6NIY4 337 aa7.43□□□□□ -1.22
VPS35-203ENST00000562420 FMNL1O95466 1100 aaPredicted RBP7.43□□□□□ -1.22
VPS35-203ENST00000562420 CLK2P49760 499 aaKnown RBP7.43□□□□□ -1.22
VPS35-203ENST00000562420 COPS2P61201 443 aa7.43□□□□□ -1.22
VPS35-203ENST00000562420 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.43□□□□□ -1.22
VPS35-203ENST00000562420 ADH1BP00325 375 aa7.42□□□□□ -1.22
VPS35-203ENST00000562420 MSS51Q4VC12 460 aa7.42□□□□□ -1.22
VPS35-203ENST00000562420 BRICD5Q6PL45 260 aa7.42□□□□□ -1.22
VPS35-203ENST00000562420 RIC3Q7Z5B4 369 aa7.42□□□□□ -1.22
VPS35-203ENST00000562420 NRG2O14511 850 aaPredicted RBP7.41□□□□□ -1.22
VPS35-203ENST00000562420 NDUFV2P19404 249 aa7.4□□□□□ -1.22
VPS35-203ENST00000562420 RETREG3Q86VR2 466 aa7.4□□□□□ -1.22
VPS35-203ENST00000562420 HLA-CQ95604 372 aa7.4□□□□□ -1.22
VPS35-203ENST00000562420 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.4□□□□□ -1.22
VPS35-203ENST00000562420 PCDHGC3Q9UN70 934 aa7.4□□□□□ -1.22
VPS35-203ENST00000562420 V9GY48 417 aaPredicted RBP7.4□□□□□ -1.22
VPS35-203ENST00000562420 MTMR2Q13614 643 aa7.39□□□□□ -1.23
VPS35-203ENST00000562420 IL27Q8NEV9 243 aa7.39□□□□□ -1.23
VPS35-203ENST00000562420 SPSB2Q99619 263 aa7.39□□□□□ -1.23
VPS35-203ENST00000562420 ZBTB3Q9H5J0 574 aa7.39□□□□□ -1.23
VPS35-203ENST00000562420 LIMD1Q9UGP4 676 aa7.39□□□□□ -1.23
VPS35-203ENST00000562420 PDZRN3Q9UPQ7 1066 aa7.39□□□□□ -1.23
VPS35-203ENST00000562420 LILRB3O75022 631 aa7.38□□□□□ -1.23
VPS35-203ENST00000562420 GUCA2AQ02747 115 aa7.38□□□□□ -1.23
VPS35-203ENST00000562420 TMEM132AQ24JP5 1023 aa7.38□□□□□ -1.23
VPS35-203ENST00000562420 PPP2R2DQ66LE6 453 aa7.38□□□□□ -1.23
VPS35-203ENST00000562420 DESI1Q6ICB0 168 aa7.38□□□□□ -1.23
VPS35-203ENST00000562420 RNF19BQ6ZMZ0 732 aa7.38□□□□□ -1.23
VPS35-203ENST00000562420 USB1Q9BQ65 265 aaKnown RBP7.38□□□□□ -1.23
VPS35-203ENST00000562420 TLL1O43897 1013 aa7.37□□□□□ -1.23
VPS35-203ENST00000562420 GGCXP38435 758 aa7.37□□□□□ -1.23
VPS35-203ENST00000562420 PCMTD1Q96MG8 357 aaPredicted RBP7.37□□□□□ -1.23
VPS35-203ENST00000562420 MMP16P51512 607 aa7.36□□□□□ -1.23
VPS35-203ENST00000562420 ZNF787Q6DD87 383 aa7.36□□□□□ -1.23
VPS35-203ENST00000562420 SLC6A16Q9GZN6 736 aa7.36□□□□□ -1.23
VPS35-203ENST00000562420 C6orf229H3BNL8 230 aa7.35□□□□□ -1.23
VPS35-203ENST00000562420 DXOO77932 396 aaKnown RBP7.35□□□□□ -1.23
VPS35-203ENST00000562420 HRCP23327 699 aa7.35□□□□□ -1.23
VPS35-203ENST00000562420 FAM160A2Q8N612 972 aaPredicted RBP7.35□□□□□ -1.23
VPS35-203ENST00000562420 POLR3EQ9NVU0 708 aa7.35□□□□□ -1.23
VPS35-203ENST00000562420 PCDHB15Q9Y5E8 787 aa7.35□□□□□ -1.23
VPS35-203ENST00000562420 JUNDP17535 347 aa7.33□□□□□ -1.24
VPS35-203ENST00000562420 QPCTQ16769 361 aa7.33□□□□□ -1.24
VPS35-203ENST00000562420 ANKLE1Q8NAG6 615 aa7.33□□□□□ -1.24
VPS35-203ENST00000562420 PROCA1Q8NCQ7 364 aaPredicted RBP7.32□□□□□ -1.24
VPS35-203ENST00000562420 PRR7Q8TB68 274 aa7.32□□□□□ -1.24
VPS35-203ENST00000562420 SOCS7O14512 581 aa7.31□□□□□ -1.24
VPS35-203ENST00000562420 S1PR4O95977 384 aa7.31□□□□□ -1.24
VPS35-203ENST00000562420 PTPRNQ16849 979 aa7.31□□□□□ -1.24
VPS35-203ENST00000562420 HELBQ8NG08 1087 aaPredicted RBP7.31□□□□□ -1.24
VPS35-203ENST00000562420 CABLES1Q8TDN4 633 aa7.31□□□□□ -1.24
VPS35-203ENST00000562420 SYMPKQ92797 1274 aaKnown RBP7.31□□□□□ -1.24
VPS35-203ENST00000562420 NUTM2BA6NNL0 878 aaPredicted RBP7.3□□□□□ -1.24
VPS35-203ENST00000562420 NUTM2EB1AL46 878 aaPredicted RBP7.3□□□□□ -1.24
VPS35-203ENST00000562420 CFAP99D6REC4 459 aa7.3□□□□□ -1.24
VPS35-203ENST00000562420 CSPP1Q1MSJ5 1256 aa7.3□□□□□ -1.24
VPS35-203ENST00000562420 NUTM2DQ5VT03 806 aaPredicted RBP7.3□□□□□ -1.24
VPS35-203ENST00000562420 NUTM2AQ8IVF1 878 aaPredicted RBP7.3□□□□□ -1.24
VPS35-203ENST00000562420 RNF223E7ERA6 249 aa7.29□□□□□ -1.24
VPS35-203ENST00000562420 SLC19A1P41440 591 aa7.29□□□□□ -1.24
VPS35-203ENST00000562420 TMEM259Q4ZIN3 620 aa7.29□□□□□ -1.24
VPS35-203ENST00000562420 TRIM67Q6ZTA4 783 aa7.29□□□□□ -1.24
VPS35-203ENST00000562420 EMID1Q96A84 441 aaPredicted RBP7.29□□□□□ -1.24
VPS35-203ENST00000562420 ZNF775Q96BV0 537 aaPredicted RBP7.29□□□□□ -1.24
VPS35-203ENST00000562420 PRDM9Q9NQV7 894 aa7.29□□□□□ -1.24
VPS35-203ENST00000562420 PPEF1O14829 653 aaPredicted RBP7.28□□□□□ -1.24
VPS35-203ENST00000562420 RFC5P40937 340 aa7.28□□□□□ -1.24
VPS35-203ENST00000562420 RTL5Q5HYW3 569 aaPredicted RBP7.28□□□□□ -1.24
VPS35-203ENST00000562420 LYPD8Q6UX82 237 aa7.28□□□□□ -1.24
VPS35-203ENST00000562420 BANK1Q8NDB2 785 aa7.27□□□□□ -1.25
VPS35-203ENST00000562420 CCNYL3P0C7X3 344 aa7.26□□□□□ -1.25
VPS35-203ENST00000562420 FBXO31Q5XUX0 539 aaPredicted RBP7.26□□□□□ -1.25
VPS35-203ENST00000562420 FCF1Q9Y324 198 aaKnown RBP7.26□□□□□ -1.25
VPS35-203ENST00000562420 RPIAP49247 311 aa7.25□□□□□ -1.25
VPS35-203ENST00000562420 NUDT12Q9BQG2 462 aa7.25□□□□□ -1.25
VPS35-203ENST00000562420 POTECB2RU33 542 aa7.24□□□□□ -1.25
VPS35-203ENST00000562420 F12P00748 615 aaPredicted RBP7.24□□□□□ -1.25
VPS35-203ENST00000562420 PKDCCQ504Y2 493 aa7.24□□□□□ -1.25
VPS35-203ENST00000562420 SPRYD7Q5W111 196 aa7.24□□□□□ -1.25
VPS35-203ENST00000562420 EVA1BQ9NVM1 165 aa7.24□□□□□ -1.25
VPS35-203ENST00000562420 ATP1B4Q9UN42 357 aaPredicted RBP7.24□□□□□ -1.25
VPS35-203ENST00000562420 MYT1Q01538 1121 aa7.23□□□□□ -1.25
VPS35-203ENST00000562420 LIAT1Q6ZQX7 453 aa7.23□□□□□ -1.25
VPS35-203ENST00000562420 TNFRSF10AO00220 468 aa7.22□□□□□ -1.25
VPS35-203ENST00000562420 USP17L8P0C7I0 530 aa7.22□□□□□ -1.25
VPS35-203ENST00000562420 KCNH2Q12809 1159 aa7.22□□□□□ -1.25
VPS35-203ENST00000562420 ZNF598Q86UK7 904 aaKnown RBP7.22□□□□□ -1.25
VPS35-203ENST00000562420 APBB1O00213 710 aa7.21□□□□□ -1.26
VPS35-203ENST00000562420 PLA2G2CQ5R387 149 aa7.21□□□□□ -1.26
VPS35-203ENST00000562420 ZNF697Q5TEC3 545 aa7.21□□□□□ -1.26
VPS35-203ENST00000562420 FAM187AA6NFU0 413 aa7.2□□□□□ -1.26
VPS35-203ENST00000562420 PER1O15534 1290 aaPredicted RBP7.2□□□□□ -1.26
VPS35-203ENST00000562420 AP1G2O75843 785 aa7.2□□□□□ -1.26
VPS35-203ENST00000562420 DGAT1O75907 488 aa7.2□□□□□ -1.26
VPS35-203ENST00000562420 CTDSPL2Q05D32 466 aa7.2□□□□□ -1.26
VPS35-203ENST00000562420 TSC1Q92574 1164 aa7.2□□□□□ -1.26
VPS35-203ENST00000562420 ZC3H4Q9UPT8 1303 aaKnown RBP7.2□□□□□ -1.26
VPS35-203ENST00000562420 ZBTB24O43167 697 aaPredicted RBP7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms