RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 RBM42Q9BTD8 480 aaKnown RBP11.81□□□□□ -0.52
VPS39-205ENST00000562258 MSH6P52701 1360 aa11.81□□□□□ -0.52
VPS39-205ENST00000562258 NEO1Q92859 1461 aa11.81□□□□□ -0.52
VPS39-205ENST00000562258 ABCA8O94911 1581 aa11.81□□□□□ -0.52
VPS39-205ENST00000562258 PPP2R1AP30153 589 aa11.81□□□□□ -0.52
VPS39-205ENST00000562258 PDE3BQ13370 1112 aa11.81□□□□□ -0.52
VPS39-205ENST00000562258 C19orf44Q9H6X5 657 aa11.81□□□□□ -0.52
VPS39-205ENST00000562258 RCAN3Q9UKA8 241 aa11.81□□□□□ -0.52
VPS39-205ENST00000562258 ACEP12821 1306 aa11.8□□□□□ -0.52
VPS39-205ENST00000562258 DDX17Q92841 729 aaKnown RBP11.8□□□□□ -0.52
VPS39-205ENST00000562258 UPF2Q9HAU5 1272 aaKnown RBP11.8□□□□□ -0.52
VPS39-205ENST00000562258 TAOK2Q9UL54 1235 aa11.8□□□□□ -0.52
VPS39-205ENST00000562258 ATAD2Q6PL18 1390 aa11.8□□□□□ -0.52
VPS39-205ENST00000562258 UHRF1BP1Q6BDS2 1440 aa11.8□□□□□ -0.52
VPS39-205ENST00000562258 LMTK3Q96Q04 1460 aa11.8□□□□□ -0.52
VPS39-205ENST00000562258 IPO8O15397 1037 aaKnown RBP11.79□□□□□ -0.52
VPS39-205ENST00000562258 TATP17735 454 aaPredicted RBP11.79□□□□□ -0.52
VPS39-205ENST00000562258 AIMP1Q12904 312 aaKnown RBP11.79□□□□□ -0.52
VPS39-205ENST00000562258 ORAI2Q96SN7 254 aa11.79□□□□□ -0.52
VPS39-205ENST00000562258 EMILIN1Q9Y6C2 1016 aa11.79□□□□□ -0.52
VPS39-205ENST00000562258 ATP7AQ04656 1500 aa11.79□□□□□ -0.52
VPS39-205ENST00000562258 FAM177BA6PVY3 158 aa11.79□□□□□ -0.52
VPS39-205ENST00000562258 TSPYL4Q9UJ04 414 aa11.79□□□□□ -0.52
VPS39-205ENST00000562258 TCP11L2Q8N4U5 519 aa11.79□□□□□ -0.52
VPS39-205ENST00000562258 ITSN2Q9NZM3 1697 aa11.78□□□□□ -0.52
VPS39-205ENST00000562258 ZNF530Q6P9A1 599 aaPredicted RBP11.78□□□□□ -0.52
VPS39-205ENST00000562258 C8orf37Q96NL8 207 aa11.78□□□□□ -0.52
VPS39-205ENST00000562258 TAF7LQ5H9L4 462 aa11.78□□□□□ -0.52
VPS39-205ENST00000562258 PPP1R1BQ9UD71 204 aaPredicted RBP11.78□□□□□ -0.52
VPS39-205ENST00000562258 PLIN1O60240 522 aa11.77□□□□□ -0.52
VPS39-205ENST00000562258 TBX22Q9Y458 520 aa11.77□□□□□ -0.52
VPS39-205ENST00000562258 ZRANB1Q9UGI0 708 aa11.77□□□□□ -0.53
VPS39-205ENST00000562258 MS4A1P11836 297 aa11.76□□□□□ -0.53
VPS39-205ENST00000562258 SF3B2Q13435 895 aaKnown RBP11.76□□□□□ -0.53
VPS39-205ENST00000562258 PLEKHO1Q53GL0 409 aaPredicted RBP11.76□□□□□ -0.53
VPS39-205ENST00000562258 RUNDC1Q96C34 613 aa11.76□□□□□ -0.53
VPS39-205ENST00000562258 NSD3Q9BZ95 1437 aa11.75□□□□□ -0.53
VPS39-205ENST00000562258 CCDC184Q52MB2 194 aa11.75□□□□□ -0.53
VPS39-205ENST00000562258 RPRD2Q5VT52 1461 aaKnown RBP11.75□□□□□ -0.53
VPS39-205ENST00000562258 KCNH5Q8NCM2 988 aa11.75□□□□□ -0.53
VPS39-205ENST00000562258 ZFYVE16Q7Z3T8 1539 aa11.74□□□□□ -0.53
VPS39-205ENST00000562258 PTCD1O75127 700 aaKnown RBP11.74□□□□□ -0.53
VPS39-205ENST00000562258 MBD5Q9P267 1494 aa11.74□□□□□ -0.53
VPS39-205ENST00000562258 RTL5Q5HYW3 569 aaPredicted RBP11.73□□□□□ -0.53
VPS39-205ENST00000562258 TMX4Q9H1E5 349 aaPredicted RBP11.73□□□□□ -0.53
VPS39-205ENST00000562258 ZCCHC11Q5TAX3 1644 aaKnown RBP11.73□□□□□ -0.53
VPS39-205ENST00000562258 TCOF1Q13428 1488 aaKnown RBP11.73□□□□□ -0.53
VPS39-205ENST00000562258 CNTLNQ9NXG0 1405 aa11.73□□□□□ -0.53
VPS39-205ENST00000562258 FKBP5Q13451 457 aaPredicted RBP11.73□□□□□ -0.53
VPS39-205ENST00000562258 THUMPD2Q9BTF0 503 aaKnown RBP11.73□□□□□ -0.53
VPS39-205ENST00000562258 NPHP3Q7Z494 1330 aa11.73□□□□□ -0.53
VPS39-205ENST00000562258 CHMP4AQ9BY43 222 aa11.73□□□□□ -0.53
VPS39-205ENST00000562258 TTC37Q6PGP7 1564 aa11.72□□□□□ -0.53
VPS39-205ENST00000562258 ANP32AP39687 249 aaKnown RBP11.72□□□□□ -0.53
VPS39-205ENST00000562258 MIS18AQ9NYP9 233 aa11.72□□□□□ -0.53
VPS39-205ENST00000562258 CABP4P57796 275 aa11.71□□□□□ -0.53
VPS39-205ENST00000562258 DCTN1Q14203 1278 aa11.71□□□□□ -0.53
VPS39-205ENST00000562258 GORABQ5T7V8 394 aa11.71□□□□□ -0.53
VPS39-205ENST00000562258 NPATQ14207 1427 aa11.71□□□□□ -0.53
VPS39-205ENST00000562258 CDCA7LQ96GN5 454 aa11.71□□□□□ -0.53
VPS39-205ENST00000562258 G3V3G9 751 aa11.71□□□□□ -0.54
VPS39-205ENST00000562258 DCAF8Q5TAQ9 597 aa11.71□□□□□ -0.54
VPS39-205ENST00000562258 CHMP4BQ9H444 224 aaKnown RBP11.71□□□□□ -0.54
VPS39-205ENST00000562258 MPRIPQ6WCQ1 1025 aa11.71□□□□□ -0.54
VPS39-205ENST00000562258 SLAIN2Q9P270 581 aa11.71□□□□□ -0.54
VPS39-205ENST00000562258 RIMBP3CA6NJZ7 1639 aa11.71□□□□□ -0.54
VPS39-205ENST00000562258 RIMBP3BA6NNM3 1639 aa11.71□□□□□ -0.54
VPS39-205ENST00000562258 RIMBP3Q9UFD9 1639 aa11.71□□□□□ -0.54
VPS39-205ENST00000562258 FRAT2O75474 233 aaPredicted RBP11.7□□□□□ -0.54
VPS39-205ENST00000562258 HSP90AB2PQ58FF8 381 aa11.7□□□□□ -0.54
VPS39-205ENST00000562258 GAS2L2Q8NHY3 880 aa11.7□□□□□ -0.54
VPS39-205ENST00000562258 TSR2Q969E8 191 aaKnown RBP11.7□□□□□ -0.54
VPS39-205ENST00000562258 C9orf78Q9NZ63 289 aaPredicted RBP11.69□□□□□ -0.54
VPS39-205ENST00000562258 TMEM2Q9UHN6 1383 aa11.69□□□□□ -0.54
VPS39-205ENST00000562258 ZNF335Q9H4Z2 1342 aaPredicted RBP11.69□□□□□ -0.54
VPS39-205ENST00000562258 DISP3Q9P2K9 1392 aa11.69□□□□□ -0.54
VPS39-205ENST00000562258 ARHGEF12Q9NZN5 1544 aa11.69□□□□□ -0.54
VPS39-205ENST00000562258 KCNJ4P48050 445 aa11.69□□□□□ -0.54
VPS39-205ENST00000562258 NEXNQ0ZGT2 675 aa11.69□□□□□ -0.54
VPS39-205ENST00000562258 E9PSI1 815 aa11.68□□□□□ -0.54
VPS39-205ENST00000562258 SPG7Q9UQ90 795 aa11.68□□□□□ -0.54
VPS39-205ENST00000562258 SMG6Q86US8 1419 aaKnown RBP11.68□□□□□ -0.54
VPS39-205ENST00000562258 COG6Q9Y2V7 657 aa11.68□□□□□ -0.54
VPS39-205ENST00000562258 MAPKBP1O60336 1514 aa11.68□□□□□ -0.54
VPS39-205ENST00000562258 GNAI1P63096 354 aa11.68□□□□□ -0.54
VPS39-205ENST00000562258 CFAP43Q8NDM7 1665 aa11.67□□□□□ -0.54
VPS39-205ENST00000562258 SCAF11Q99590 1463 aaKnown RBP11.67□□□□□ -0.54
VPS39-205ENST00000562258 TTC21BQ7Z4L5 1316 aa11.67□□□□□ -0.54
VPS39-205ENST00000562258 FYB1O15117 783 aa11.67□□□□□ -0.54
VPS39-205ENST00000562258 MCM10Q7L590 875 aa11.67□□□□□ -0.54
VPS39-205ENST00000562258 SHANK2Q9UPX8 1470 aa11.67□□□□□ -0.54
VPS39-205ENST00000562258 RIC3Q7Z5B4 369 aa11.67□□□□□ -0.54
VPS39-205ENST00000562258 EXOC5O00471 708 aa11.67□□□□□ -0.54
VPS39-205ENST00000562258 LRRC59Q96AG4 307 aaKnown RBP11.67□□□□□ -0.54
VPS39-205ENST00000562258 CLASP1Q7Z460 1538 aa11.66□□□□□ -0.54
VPS39-205ENST00000562258 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.66□□□□□ -0.54
VPS39-205ENST00000562258 MYL6BP14649 208 aa11.66□□□□□ -0.54
VPS39-205ENST00000562258 LRPPRCP42704 1394 aaKnown RBP11.66□□□□□ -0.54
VPS39-205ENST00000562258 PZPP20742 1482 aa11.66□□□□□ -0.54
VPS39-205ENST00000562258 ISY1Q9ULR0 285 aaKnown RBP11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 96.1 ms