RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 GTF3C3Q9Y5Q9 886 aa10.09□□□□□ -0.79
VPS39-204ENST00000561818 ANKRD36BQ8N2N9 1353 aa10.09□□□□□ -0.79
VPS39-204ENST00000561818 PLEKHG1Q9ULL1 1385 aa10.09□□□□□ -0.79
VPS39-204ENST00000561818 FER1L4A9Z1Z3 1794 aa10.09□□□□□ -0.79
VPS39-204ENST00000561818 SLIT1O75093 1534 aa10.08□□□□□ -0.8
VPS39-204ENST00000561818 TRHP20396 242 aaPredicted RBP10.08□□□□□ -0.8
VPS39-204ENST00000561818 TERF2IPQ9NYB0 399 aa10.08□□□□□ -0.8
VPS39-204ENST00000561818 MED14O60244 1454 aa10.07□□□□□ -0.8
VPS39-204ENST00000561818 PTPRMP28827 1452 aa10.07□□□□□ -0.8
VPS39-204ENST00000561818 PIK3R4Q99570 1358 aa10.07□□□□□ -0.8
VPS39-204ENST00000561818 THEMISQ8N1K5 641 aaPredicted RBP10.07□□□□□ -0.8
VPS39-204ENST00000561818 PNISRQ8TF01 805 aaKnown RBP10.07□□□□□ -0.8
VPS39-204ENST00000561818 RNF39Q9H2S5 420 aa10.07□□□□□ -0.8
VPS39-204ENST00000561818 POGKQ9P215 609 aa10.07□□□□□ -0.8
VPS39-204ENST00000561818 TRAK1Q9UPV9 953 aa10.07□□□□□ -0.8
VPS39-204ENST00000561818 UBR1Q8IWV7 1749 aa10.07□□□□□ -0.8
VPS39-204ENST00000561818 MYO5BQ9ULV0 1848 aa10.06□□□□□ -0.8
VPS39-204ENST00000561818 AMER1Q5JTC6 1135 aaPredicted RBP10.06□□□□□ -0.8
VPS39-204ENST00000561818 FBXO31Q5XUX0 539 aaPredicted RBP10.06□□□□□ -0.8
VPS39-204ENST00000561818 CPS1P31327 1500 aa10.06□□□□□ -0.8
VPS39-204ENST00000561818 ATP7BP35670 1465 aa10.05□□□□□ -0.8
VPS39-204ENST00000561818 ARHGAP23Q9P227 1491 aa10.05□□□□□ -0.8
VPS39-204ENST00000561818 MLECQ14165 292 aa10.05□□□□□ -0.8
VPS39-204ENST00000561818 WDR43Q15061 677 aaKnown RBP eCLIP10.04□□□□□ -0.8
VPS39-204ENST00000561818 HDGFL2Q7Z4V5 671 aaPredicted RBP10.04□□□□□ -0.8
VPS39-204ENST00000561818 FAM9BQ8IZU0 186 aa10.04□□□□□ -0.8
VPS39-204ENST00000561818 DNAJC5Q9H3Z4 198 aa10.04□□□□□ -0.8
VPS39-204ENST00000561818 C3P01024 1663 aa10.03□□□□□ -0.8
VPS39-204ENST00000561818 SETD1AO15047 1707 aaKnown RBP10.03□□□□□ -0.8
VPS39-204ENST00000561818 BLMP54132 1417 aaPredicted RBP10.03□□□□□ -0.8
VPS39-204ENST00000561818 CACNB1Q02641 598 aaPredicted RBP10.03□□□□□ -0.8
VPS39-204ENST00000561818 CFAP53Q96M91 514 aa10.03□□□□□ -0.8
VPS39-204ENST00000561818 TULP4Q9NRJ4 1543 aa10.02□□□□□ -0.8
VPS39-204ENST00000561818 POLR3AO14802 1390 aaPredicted RBP10.02□□□□□ -0.8
VPS39-204ENST00000561818 ADGRB2O60241 1585 aa10.02□□□□□ -0.81
VPS39-204ENST00000561818 PTCH1Q13635 1447 aa10.02□□□□□ -0.81
VPS39-204ENST00000561818 SMG6Q86US8 1419 aaKnown RBP10.02□□□□□ -0.81
VPS39-204ENST00000561818 NSD3Q9BZ95 1437 aa10.01□□□□□ -0.81
VPS39-204ENST00000561818 SRPK2P78362 688 aaKnown RBP10.01□□□□□ -0.81
VPS39-204ENST00000561818 PNNQ9H307 717 aaKnown RBP10.01□□□□□ -0.81
VPS39-204ENST00000561818 ZNF142P52746 1687 aaPredicted RBP10.01□□□□□ -0.81
VPS39-204ENST00000561818 TMEM132EQ6IEE7 984 aa10□□□□□ -0.81
VPS39-204ENST00000561818 PRAM1Q96QH2 718 aa10□□□□□ -0.81
VPS39-204ENST00000561818 TBX22Q9Y458 520 aa10□□□□□ -0.81
VPS39-204ENST00000561818 NRXN3Q9Y4C0 1643 aa10□□□□□ -0.81
VPS39-204ENST00000561818 SETD1BQ9UPS6 1966 aaKnown RBP9.99□□□□□ -0.81
VPS39-204ENST00000561818 PPP2R1AP30153 589 aa9.99□□□□□ -0.81
VPS39-204ENST00000561818 CC2D1BQ5T0F9 858 aaKnown RBP9.99□□□□□ -0.81
VPS39-204ENST00000561818 CEP170BQ9Y4F5 1589 aaPredicted RBP9.99□□□□□ -0.81
VPS39-204ENST00000561818 MORC1Q86VD1 984 aa9.98□□□□□ -0.81
VPS39-204ENST00000561818 ZNF692Q9BU19 519 aaPredicted RBP9.98□□□□□ -0.81
VPS39-204ENST00000561818 NUDCQ9Y266 331 aa9.98□□□□□ -0.81
VPS39-204ENST00000561818 BCANQ96GW7 911 aa9.97□□□□□ -0.81
VPS39-204ENST00000561818 EDC4Q6P2E9 1401 aaKnown RBP9.97□□□□□ -0.81
VPS39-204ENST00000561818 ADAMTSL3P82987 1691 aa9.96□□□□□ -0.81
VPS39-204ENST00000561818 ANKRD26Q9UPS8 1709 aa9.96□□□□□ -0.81
VPS39-204ENST00000561818 TXNDC2Q86VQ3 553 aa9.96□□□□□ -0.82
VPS39-204ENST00000561818 STK26Q9P289 416 aa9.96□□□□□ -0.82
VPS39-204ENST00000561818 ADAMTS13Q76LX8 1427 aa9.96□□□□□ -0.82
VPS39-204ENST00000561818 WASLO00401 505 aaPredicted RBP9.95□□□□□ -0.82
VPS39-204ENST00000561818 CCDC61Q9Y6R9 512 aa9.95□□□□□ -0.82
VPS39-204ENST00000561818 ANKARQ7Z5J8 1434 aa9.95□□□□□ -0.82
VPS39-204ENST00000561818 CDC42BPGQ6DT37 1551 aa9.94□□□□□ -0.82
VPS39-204ENST00000561818 A0A1W2PP64 1363 aa9.94□□□□□ -0.82
VPS39-204ENST00000561818 ANKLE2Q86XL3 938 aa9.94□□□□□ -0.82
VPS39-204ENST00000561818 CDK19Q9BWU1 502 aa9.94□□□□□ -0.82
VPS39-204ENST00000561818 ITSN1Q15811 1721 aa9.93□□□□□ -0.82
VPS39-204ENST00000561818 METP08581 1390 aa9.93□□□□□ -0.82
VPS39-204ENST00000561818 MINK1Q8N4C8 1332 aaPredicted RBP9.93□□□□□ -0.82
VPS39-204ENST00000561818 CCDC184Q52MB2 194 aa9.93□□□□□ -0.82
VPS39-204ENST00000561818 NUTM2DQ5VT03 806 aaPredicted RBP9.93□□□□□ -0.82
VPS39-204ENST00000561818 CARD14Q9BXL6 1004 aa9.93□□□□□ -0.82
VPS39-204ENST00000561818 SLC12A5Q9H2X9 1139 aa9.93□□□□□ -0.82
VPS39-204ENST00000561818 RIMS1Q86UR5 1692 aaKnown RBP9.93□□□□□ -0.82
VPS39-204ENST00000561818 CPSF1Q10570 1443 aaKnown RBP9.92□□□□□ -0.82
VPS39-204ENST00000561818 NEFMP07197 916 aa9.92□□□□□ -0.82
VPS39-204ENST00000561818 SUPT16HQ9Y5B9 1047 aaKnown RBP9.92□□□□□ -0.82
VPS39-204ENST00000561818 AATKQ6ZMQ8 1374 aa9.91□□□□□ -0.82
VPS39-204ENST00000561818 CABP2Q9NPB3 220 aa9.91□□□□□ -0.82
VPS39-204ENST00000561818 LRRC7Q96NW7 1537 aa9.91□□□□□ -0.82
VPS39-204ENST00000561818 KIF20BQ96Q89 1820 aa9.91□□□□□ -0.82
VPS39-204ENST00000561818 PPIP5K1Q6PFW1 1433 aa9.9□□□□□ -0.82
VPS39-204ENST00000561818 XRN1Q8IZH2 1706 aaKnown RBP9.9□□□□□ -0.82
VPS39-204ENST00000561818 TTC21AQ8NDW8 1320 aa9.9□□□□□ -0.82
VPS39-204ENST00000561818 C1QBPQ07021 282 aaKnown RBP9.9□□□□□ -0.82
VPS39-204ENST00000561818 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.9□□□□□ -0.82
VPS39-204ENST00000561818 RNF123Q5XPI4 1314 aa9.89□□□□□ -0.83
VPS39-204ENST00000561818 CCDC27Q2M243 656 aa9.89□□□□□ -0.83
VPS39-204ENST00000561818 MON2Q7Z3U7 1717 aa9.89□□□□□ -0.83
VPS39-204ENST00000561818 CD163L1Q9NR16 1453 aa9.89□□□□□ -0.83
VPS39-204ENST00000561818 TOPAZ1Q8N9V7 1692 aa9.88□□□□□ -0.83
VPS39-204ENST00000561818 PLEKHG3A1L390 1219 aa9.88□□□□□ -0.83
VPS39-204ENST00000561818 E9PSI1 815 aa9.88□□□□□ -0.83
VPS39-204ENST00000561818 GOLGA2Q08379 1002 aa9.88□□□□□ -0.83
VPS39-204ENST00000561818 FKBP8Q14318 412 aa9.88□□□□□ -0.83
VPS39-204ENST00000561818 RUNDC1Q96C34 613 aa9.88□□□□□ -0.83
VPS39-204ENST00000561818 KIF24Q5T7B8 1368 aa9.88□□□□□ -0.83
VPS39-204ENST00000561818 CDK12Q9NYV4 1490 aaPredicted RBP9.87□□□□□ -0.83
VPS39-204ENST00000561818 CT47B1P0C2W7 299 aaPredicted RBP9.87□□□□□ -0.83
VPS39-204ENST00000561818 LTKP29376 864 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 152.4 ms