RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 ADGRF5Q8IZF2 1346 aa24.72■■□□□ 1.55
CLN3-208ENST00000561505 ABCC11Q96J66 1382 aa24.7■■□□□ 1.55
CLN3-208ENST00000561505 ANKRD30BQ9BXX2 1392 aa24.7■■□□□ 1.55
CLN3-208ENST00000561505 NGLY1Q96IV0 654 aa24.7■■□□□ 1.54
CLN3-208ENST00000561505 MYOM2P54296 1465 aa24.7■■□□□ 1.54
CLN3-208ENST00000561505 PXDNQ92626 1479 aa24.69■■□□□ 1.54
CLN3-208ENST00000561505 CCDC144AA2RUR9 1427 aa24.69■■□□□ 1.54
CLN3-208ENST00000561505 LRPPRCP42704 1394 aaKnown RBP24.68■■□□□ 1.54
CLN3-208ENST00000561505 NPHP3Q7Z494 1330 aa24.68■■□□□ 1.54
CLN3-208ENST00000561505 FOXD1Q16676 465 aa24.68■■□□□ 1.54
CLN3-208ENST00000561505 IFT172Q9UG01 1749 aa24.67■■□□□ 1.54
CLN3-208ENST00000561505 ADAMTS2O95450 1211 aa24.67■■□□□ 1.54
CLN3-208ENST00000561505 PIK3C2GO75747 1445 aa24.65■■□□□ 1.54
CLN3-208ENST00000561505 ATRNO75882 1429 aa24.65■■□□□ 1.54
CLN3-208ENST00000561505 SIRT1Q96EB6 747 aa24.65■■□□□ 1.54
CLN3-208ENST00000561505 MPHOSPH9Q99550 1183 aa24.65■■□□□ 1.54
CLN3-208ENST00000561505 USP21Q9UK80 565 aa24.64■■□□□ 1.54
CLN3-208ENST00000561505 ESCO1Q5FWF5 840 aa24.63■■□□□ 1.53
CLN3-208ENST00000561505 TRPC5Q9UL62 973 aaPredicted RBP24.63■■□□□ 1.53
CLN3-208ENST00000561505 KNDC1Q76NI1 1749 aa24.63■■□□□ 1.53
CLN3-208ENST00000561505 WAPLQ7Z5K2 1190 aa24.62■■□□□ 1.53
CLN3-208ENST00000561505 BCL9LQ86UU0 1499 aa24.61■■□□□ 1.53
CLN3-208ENST00000561505 ACIN1Q9UKV3 1341 aaKnown RBP24.61■■□□□ 1.53
CLN3-208ENST00000561505 RGL3Q3MIN7 710 aa24.6■■□□□ 1.53
CLN3-208ENST00000561505 FOXO3O43524 673 aa24.59■■□□□ 1.53
CLN3-208ENST00000561505 NRXN1Q9ULB1 1477 aa24.58■■□□□ 1.53
CLN3-208ENST00000561505 PLEKHH1Q9ULM0 1364 aa24.58■■□□□ 1.53
CLN3-208ENST00000561505 TMEM132EQ6IEE7 984 aa24.57■■□□□ 1.52
CLN3-208ENST00000561505 C14orf93Q9H972 538 aaKnown RBP24.57■■□□□ 1.52
CLN3-208ENST00000561505 YTHDC2Q9H6S0 1430 aaKnown RBP24.57■■□□□ 1.52
CLN3-208ENST00000561505 STK26Q9P289 416 aa24.56■■□□□ 1.52
CLN3-208ENST00000561505 ATAD2Q6PL18 1390 aa24.55■■□□□ 1.52
CLN3-208ENST00000561505 FMN2Q9NZ56 1722 aa24.55■■□□□ 1.52
CLN3-208ENST00000561505 MARF1Q9Y4F3 1742 aaKnown RBP24.55■■□□□ 1.52
CLN3-208ENST00000561505 SPATA31A3Q5VYP0 1347 aa24.54■■□□□ 1.52
CLN3-208ENST00000561505 SLIT2O94813 1529 aa24.51■■□□□ 1.51
CLN3-208ENST00000561505 KIF1AQ12756 1690 aa24.5■■□□□ 1.51
CLN3-208ENST00000561505 XPCQ01831 940 aaPredicted RBP24.5■■□□□ 1.51
CLN3-208ENST00000561505 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.49■■□□□ 1.51
CLN3-208ENST00000561505 GJD4Q96KN9 370 aaPredicted RBP24.49■■□□□ 1.51
CLN3-208ENST00000561505 NUTM2FA1L443 756 aa24.48■■□□□ 1.51
CLN3-208ENST00000561505 KRT28Q7Z3Y7 464 aa24.46■■□□□ 1.51
CLN3-208ENST00000561505 CCDC125Q86Z20 511 aa24.46■■□□□ 1.51
CLN3-208ENST00000561505 DHX57Q6P158 1386 aaKnown RBP24.45■■□□□ 1.5
CLN3-208ENST00000561505 CFAP70Q5T0N1 1121 aa24.45■■□□□ 1.5
CLN3-208ENST00000561505 UNC5CLQ8IV45 518 aa24.45■■□□□ 1.5
CLN3-208ENST00000561505 DLC1Q96QB1 1528 aa24.44■■□□□ 1.5
CLN3-208ENST00000561505 PHF8Q9UPP1 1060 aa24.43■■□□□ 1.5
CLN3-208ENST00000561505 SBNO1A3KN83 1393 aa24.42■■□□□ 1.5
CLN3-208ENST00000561505 EP400Q96L91 3159 aa24.42■■□□□ 1.5
CLN3-208ENST00000561505 GLI3P10071 1580 aa24.42■■□□□ 1.5
CLN3-208ENST00000561505 USP32Q8NFA0 1604 aa24.41■■□□□ 1.5
CLN3-208ENST00000561505 TNS3Q68CZ2 1445 aa24.41■■□□□ 1.5
CLN3-208ENST00000561505 RALGAPBQ86X10 1494 aa24.4■■□□□ 1.5
CLN3-208ENST00000561505 ADGRB1O14514 1584 aa24.39■■□□□ 1.5
CLN3-208ENST00000561505 ANKARQ7Z5J8 1434 aa24.39■■□□□ 1.5
CLN3-208ENST00000561505 ONECUT3O60422 494 aaPredicted RBP24.39■■□□□ 1.49
CLN3-208ENST00000561505 PSME1Q06323 249 aa24.39■■□□□ 1.49
CLN3-208ENST00000561505 PRAM1Q96QH2 718 aa24.38■■□□□ 1.49
CLN3-208ENST00000561505 RGPD8O14715 1765 aaPredicted RBP24.38■■□□□ 1.49
CLN3-208ENST00000561505 ADGRB2O60241 1585 aa24.37■■□□□ 1.49
CLN3-208ENST00000561505 VPS72Q15906 364 aa24.35■■□□□ 1.49
CLN3-208ENST00000561505 SRCAPQ6ZRS2 3230 aa24.34■■□□□ 1.49
CLN3-208ENST00000561505 ARHGEF10O15013 1369 aa24.34■■□□□ 1.49
CLN3-208ENST00000561505 RAB3GAP2Q9H2M9 1393 aa24.33■■□□□ 1.49
CLN3-208ENST00000561505 STAC3Q96MF2 364 aa24.33■■□□□ 1.49
CLN3-208ENST00000561505 NWD2Q9ULI1 1742 aa24.32■■□□□ 1.48
CLN3-208ENST00000561505 ZRANB1Q9UGI0 708 aa24.31■■□□□ 1.48
CLN3-208ENST00000561505 ABCA3Q99758 1704 aa24.3■■□□□ 1.48
CLN3-208ENST00000561505 BLMP54132 1417 aaPredicted RBP24.3■■□□□ 1.48
CLN3-208ENST00000561505 CABLES1Q8TDN4 633 aa24.3■■□□□ 1.48
CLN3-208ENST00000561505 TRPM3Q9HCF6 1732 aaPredicted RBP24.28■■□□□ 1.48
CLN3-208ENST00000561505 HRCP23327 699 aa24.28■■□□□ 1.48
CLN3-208ENST00000561505 POGKQ9P215 609 aa24.28■■□□□ 1.48
CLN3-208ENST00000561505 PLCH1Q4KWH8 1693 aa24.27■■□□□ 1.48
CLN3-208ENST00000561505 FAM83GA6ND36 823 aa24.27■■□□□ 1.48
CLN3-208ENST00000561505 SAFB2Q14151 953 aaKnown RBP eCLIP24.27■■□□□ 1.48
CLN3-208ENST00000561505 SEPT12Q8IYM1 358 aa24.27■■□□□ 1.48
CLN3-208ENST00000561505 PRR36Q9H6K5 1346 aa24.27■■□□□ 1.48
CLN3-208ENST00000561505 BRWD3Q6RI45 1802 aa24.26■■□□□ 1.47
CLN3-208ENST00000561505 PMFBP1Q8TBY8 1022 aa24.25■■□□□ 1.47
CLN3-208ENST00000561505 EIF3AQ14152 1382 aaKnown RBP24.25■■□□□ 1.47
CLN3-208ENST00000561505 ALS2Q96Q42 1657 aa24.24■■□□□ 1.47
CLN3-208ENST00000561505 TULP4Q9NRJ4 1543 aa24.24■■□□□ 1.47
CLN3-208ENST00000561505 TRAK1Q9UPV9 953 aa24.23■■□□□ 1.47
CLN3-208ENST00000561505 WASLO00401 505 aaPredicted RBP24.22■■□□□ 1.47
CLN3-208ENST00000561505 HAP1P54257 671 aaPredicted RBP24.22■■□□□ 1.47
CLN3-208ENST00000561505 NRAPQ86VF7 1730 aa24.21■■□□□ 1.47
CLN3-208ENST00000561505 GPRASP1Q5JY77 1395 aa24.19■■□□□ 1.46
CLN3-208ENST00000561505 DCAF11Q8TEB1 546 aa24.19■■□□□ 1.46
CLN3-208ENST00000561505 KRT27Q7Z3Y8 459 aa24.18■■□□□ 1.46
CLN3-208ENST00000561505 HIRIP3Q9BW71 556 aaPredicted RBP24.18■■□□□ 1.46
CLN3-208ENST00000561505 CRYBG1Q9Y4K1 1723 aa24.18■■□□□ 1.46
CLN3-208ENST00000561505 MINK1Q8N4C8 1332 aaPredicted RBP24.17■■□□□ 1.46
CLN3-208ENST00000561505 LMOD2Q6P5Q4 547 aa24.17■■□□□ 1.46
CLN3-208ENST00000561505 COL14A1Q05707 1796 aaKnown RBP24.16■■□□□ 1.46
CLN3-208ENST00000561505 DEFB132Q7Z7B7 95 aa24.16■■□□□ 1.46
CLN3-208ENST00000561505 KDM2AQ9Y2K7 1162 aa24.15■■□□□ 1.46
CLN3-208ENST00000561505 BTG4Q9NY30 223 aa24.14■■□□□ 1.45
CLN3-208ENST00000561505 ATP7BP35670 1465 aa24.13■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms