RNA–Protein interactions for RNA: ENST00000560959.5

TPM1-226, Transcript of tropomyosin 1, humanhuman

TSL 2 BASIC

Gene TPM1, Length 925 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-226ENST00000560959 NPHP3Q7Z494 1330 aa28.13■■■□□ 2.09
TPM1-226ENST00000560959 COL22A1Q8NFW1 1626 aaPredicted RBP28.1■■■□□ 2.09
TPM1-226ENST00000560959 ZRANB1Q9UGI0 708 aa28.1■■■□□ 2.09
TPM1-226ENST00000560959 NAIPQ13075 1403 aa28.09■■■□□ 2.09
TPM1-226ENST00000560959 MYOM2P54296 1465 aa28.08■■■□□ 2.09
TPM1-226ENST00000560959 ESCO1Q5FWF5 840 aa28.07■■■□□ 2.08
TPM1-226ENST00000560959 BCL9LQ86UU0 1499 aa28.06■■■□□ 2.08
TPM1-226ENST00000560959 LRPPRCP42704 1394 aaKnown RBP28.04■■■□□ 2.08
TPM1-226ENST00000560959 GJD4Q96KN9 370 aaPredicted RBP28.03■■■□□ 2.08
TPM1-226ENST00000560959 PXDNQ92626 1479 aa28.02■■■□□ 2.08
TPM1-226ENST00000560959 EP400Q96L91 3159 aa28.02■■■□□ 2.08
TPM1-226ENST00000560959 RRBP1Q9P2E9 1410 aaKnown RBP28.01■■■□□ 2.08
TPM1-226ENST00000560959 FOXO3O43524 673 aa28.01■■■□□ 2.07
TPM1-226ENST00000560959 PPARGC1BQ86YN6 1023 aaKnown RBP28.01■■■□□ 2.07
TPM1-226ENST00000560959 CDC42BPGQ6DT37 1551 aa28.01■■■□□ 2.07
TPM1-226ENST00000560959 SLC4A1APQ9BWU0 796 aaKnown RBP28■■■□□ 2.07
TPM1-226ENST00000560959 TECPR2O15040 1411 aa27.96■■■□□ 2.07
TPM1-226ENST00000560959 UNC5CLQ8IV45 518 aa27.95■■■□□ 2.06
TPM1-226ENST00000560959 PPLO60437 1756 aa27.95■■■□□ 2.06
TPM1-226ENST00000560959 ABCC11Q96J66 1382 aa27.93■■■□□ 2.06
TPM1-226ENST00000560959 XPCQ01831 940 aaPredicted RBP27.92■■■□□ 2.06
TPM1-226ENST00000560959 ADGRF5Q8IZF2 1346 aa27.92■■■□□ 2.06
TPM1-226ENST00000560959 WAPLQ7Z5K2 1190 aa27.91■■■□□ 2.06
TPM1-226ENST00000560959 SPATA31A3Q5VYP0 1347 aa27.91■■■□□ 2.06
TPM1-226ENST00000560959 MARF1Q9Y4F3 1742 aaKnown RBP27.9■■■□□ 2.06
TPM1-226ENST00000560959 SLIT2O94813 1529 aa27.9■■■□□ 2.06
TPM1-226ENST00000560959 ANKRD30BQ9BXX2 1392 aa27.89■■■□□ 2.06
TPM1-226ENST00000560959 BLMP54132 1417 aaPredicted RBP27.88■■■□□ 2.05
TPM1-226ENST00000560959 STK26Q9P289 416 aa27.88■■■□□ 2.05
TPM1-226ENST00000560959 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.87■■■□□ 2.05
TPM1-226ENST00000560959 SIRT1Q96EB6 747 aa27.87■■■□□ 2.05
TPM1-226ENST00000560959 NUTM2FA1L443 756 aa27.86■■■□□ 2.05
TPM1-226ENST00000560959 RALGAPBQ86X10 1494 aa27.86■■■□□ 2.05
TPM1-226ENST00000560959 CCDC144AA2RUR9 1427 aa27.85■■■□□ 2.05
TPM1-226ENST00000560959 KRT28Q7Z3Y7 464 aa27.84■■■□□ 2.05
TPM1-226ENST00000560959 SPATA31E1Q6ZUB1 1445 aa27.83■■■□□ 2.05
TPM1-226ENST00000560959 ONECUT3O60422 494 aaPredicted RBP27.82■■■□□ 2.04
TPM1-226ENST00000560959 RGL3Q3MIN7 710 aa27.82■■■□□ 2.04
TPM1-226ENST00000560959 PSME1Q06323 249 aa27.81■■■□□ 2.04
TPM1-226ENST00000560959 TMEM132EQ6IEE7 984 aa27.81■■■□□ 2.04
TPM1-226ENST00000560959 PLEKHH1Q9ULM0 1364 aa27.81■■■□□ 2.04
TPM1-226ENST00000560959 GLI3P10071 1580 aa27.81■■■□□ 2.04
TPM1-226ENST00000560959 VPS72Q15906 364 aa27.8■■■□□ 2.04
TPM1-226ENST00000560959 KIF1AQ12756 1690 aa27.78■■■□□ 2.04
TPM1-226ENST00000560959 PIK3C2GO75747 1445 aa27.78■■■□□ 2.04
TPM1-226ENST00000560959 SF3B2Q13435 895 aaKnown RBP27.78■■■□□ 2.04
TPM1-226ENST00000560959 SEPT12Q8IYM1 358 aa27.78■■■□□ 2.04
TPM1-226ENST00000560959 YTHDC2Q9H6S0 1430 aaKnown RBP27.77■■■□□ 2.04
TPM1-226ENST00000560959 KNDC1Q76NI1 1749 aa27.76■■■□□ 2.03
TPM1-226ENST00000560959 PHF8Q9UPP1 1060 aa27.76■■■□□ 2.03
TPM1-226ENST00000560959 FMN2Q9NZ56 1722 aa27.75■■■□□ 2.03
TPM1-226ENST00000560959 USP32Q8NFA0 1604 aa27.75■■■□□ 2.03
TPM1-226ENST00000560959 TNS3Q68CZ2 1445 aa27.75■■■□□ 2.03
TPM1-226ENST00000560959 SBNO1A3KN83 1393 aa27.74■■■□□ 2.03
TPM1-226ENST00000560959 HAP1P54257 671 aaPredicted RBP27.74■■■□□ 2.03
TPM1-226ENST00000560959 DEFB132Q7Z7B7 95 aa27.74■■■□□ 2.03
TPM1-226ENST00000560959 C14orf93Q9H972 538 aaKnown RBP27.73■■■□□ 2.03
TPM1-226ENST00000560959 MPHOSPH9Q99550 1183 aa27.72■■■□□ 2.03
TPM1-226ENST00000560959 KRT27Q7Z3Y8 459 aa27.71■■■□□ 2.03
TPM1-226ENST00000560959 ARHGEF10O15013 1369 aa27.71■■■□□ 2.03
TPM1-226ENST00000560959 IFT172Q9UG01 1749 aa27.7■■■□□ 2.02
TPM1-226ENST00000560959 CABLES1Q8TDN4 633 aa27.69■■■□□ 2.02
TPM1-226ENST00000560959 DHX57Q6P158 1386 aaKnown RBP27.68■■■□□ 2.02
TPM1-226ENST00000560959 NRXN1Q9ULB1 1477 aa27.67■■■□□ 2.02
TPM1-226ENST00000560959 FAM83GA6ND36 823 aa27.66■■■□□ 2.02
TPM1-226ENST00000560959 CCDC9Q9Y3X0 531 aaKnown RBP27.66■■■□□ 2.02
TPM1-226ENST00000560959 BRWD3Q6RI45 1802 aa27.66■■■□□ 2.02
TPM1-226ENST00000560959 NWD2Q9ULI1 1742 aa27.66■■■□□ 2.02
TPM1-226ENST00000560959 ACIN1Q9UKV3 1341 aaKnown RBP27.65■■■□□ 2.02
TPM1-226ENST00000560959 BAG6P46379 1132 aa27.62■■■□□ 2.01
TPM1-226ENST00000560959 LMOD2Q6P5Q4 547 aa27.62■■■□□ 2.01
TPM1-226ENST00000560959 CFAP70Q5T0N1 1121 aa27.61■■■□□ 2.01
TPM1-226ENST00000560959 PRAM1Q96QH2 718 aa27.61■■■□□ 2.01
TPM1-226ENST00000560959 ANKARQ7Z5J8 1434 aa27.6■■■□□ 2.01
TPM1-226ENST00000560959 LRP5O75197 1615 aa27.59■■■□□ 2.01
TPM1-226ENST00000560959 PLCH1Q4KWH8 1693 aa27.58■■■□□ 2.01
TPM1-226ENST00000560959 RGPD8O14715 1765 aaPredicted RBP27.56■■■□□ 2
TPM1-226ENST00000560959 PMFBP1Q8TBY8 1022 aa27.56■■■□□ 2
TPM1-226ENST00000560959 BTG4Q9NY30 223 aa27.55■■■□□ 2
TPM1-226ENST00000560959 POGKQ9P215 609 aa27.55■■■□□ 2
TPM1-226ENST00000560959 DLC1Q96QB1 1528 aa27.55■■■□□ 2
TPM1-226ENST00000560959 PLEKHG5O94827 1062 aa27.54■■■□□ 2
TPM1-226ENST00000560959 SAFB2Q14151 953 aaKnown RBP eCLIP27.54■■■□□ 2
TPM1-226ENST00000560959 FAM98CQ17RN3 349 aaKnown RBP27.54■■■□□ 2
TPM1-226ENST00000560959 A0A0G2JS52 829 aa27.53■■■□□ 2
TPM1-226ENST00000560959 HRCP23327 699 aa27.53■■■□□ 2
TPM1-226ENST00000560959 MYT1Q01538 1121 aa27.53■■■□□ 2
TPM1-226ENST00000560959 ABCA3Q99758 1704 aa27.52■■■□□ 2
TPM1-226ENST00000560959 GPRASP1Q5JY77 1395 aa27.51■■□□□ 1.99
TPM1-226ENST00000560959 EIF3AQ14152 1382 aaKnown RBP27.49■■□□□ 1.99
TPM1-226ENST00000560959 SPATA31A5Q5VU36 1347 aa27.48■■□□□ 1.99
TPM1-226ENST00000560959 SPATA31A7Q8IWB4 1347 aa27.48■■□□□ 1.99
TPM1-226ENST00000560959 PSDA5PKW4 1024 aaPredicted RBP27.48■■□□□ 1.99
TPM1-226ENST00000560959 ADGRB2O60241 1585 aa27.48■■□□□ 1.99
TPM1-226ENST00000560959 EN1Q05925 392 aaPredicted RBP27.46■■□□□ 1.99
TPM1-226ENST00000560959 DISP2A7MBM2 1401 aa27.46■■□□□ 1.99
TPM1-226ENST00000560959 NRAPQ86VF7 1730 aa27.46■■□□□ 1.99
TPM1-226ENST00000560959 COL14A1Q05707 1796 aaKnown RBP27.45■■□□□ 1.99
TPM1-226ENST00000560959 TRPM3Q9HCF6 1732 aaPredicted RBP27.44■■□□□ 1.98
TPM1-226ENST00000560959 WASLO00401 505 aaPredicted RBP27.42■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms