RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 FECHP22830 423 aa6.11□□□□□ -1.43
SPG11-223ENST00000560858 GCGRP47871 477 aa6.11□□□□□ -1.43
SPG11-223ENST00000560858 REPIN1Q9BWE0 567 aaKnown RBP6.11□□□□□ -1.43
SPG11-223ENST00000560858 TRIM32Q13049 653 aa6.1□□□□□ -1.43
SPG11-223ENST00000560858 MSS51Q4VC12 460 aa6.1□□□□□ -1.43
SPG11-223ENST00000560858 KCNV2Q8TDN2 545 aa6.1□□□□□ -1.43
SPG11-223ENST00000560858 MRGPRX2Q96LB1 330 aa6.1□□□□□ -1.43
SPG11-223ENST00000560858 PRDM9Q9NQV7 894 aa6.1□□□□□ -1.43
SPG11-223ENST00000560858 J3QL48 77 aa6.09□□□□□ -1.43
SPG11-223ENST00000560858 Q3C1V9 767 aa6.09□□□□□ -1.43
SPG11-223ENST00000560858 HPS1Q92902 700 aa6.08□□□□□ -1.44
SPG11-223ENST00000560858 LCE2CQ5TA81 110 aa6.07□□□□□ -1.44
SPG11-223ENST00000560858 ZSCAN1Q8NBB4 408 aa6.07□□□□□ -1.44
SPG11-223ENST00000560858 IRF7Q92985 503 aa6.07□□□□□ -1.44
SPG11-223ENST00000560858 NXF1Q9UBU9 619 aaKnown RBP6.07□□□□□ -1.44
SPG11-223ENST00000560858 GNPATO15228 680 aa6.06□□□□□ -1.44
SPG11-223ENST00000560858 MMP16P51512 607 aa6.06□□□□□ -1.44
SPG11-223ENST00000560858 P3H3Q8IVL6 736 aa6.06□□□□□ -1.44
SPG11-223ENST00000560858 NPAS3Q8IXF0 933 aa6.06□□□□□ -1.44
SPG11-223ENST00000560858 SEMA3EO15041 775 aa6.05□□□□□ -1.44
SPG11-223ENST00000560858 RC3H1Q5TC82 1133 aaKnown RBP6.05□□□□□ -1.44
SPG11-223ENST00000560858 SMYD5Q6GMV2 418 aa6.05□□□□□ -1.44
SPG11-223ENST00000560858 RNF19BQ6ZMZ0 732 aa6.05□□□□□ -1.44
SPG11-223ENST00000560858 CCDC24Q8N4L8 307 aa6.04□□□□□ -1.44
SPG11-223ENST00000560858 USB1Q9BQ65 265 aaKnown RBP6.04□□□□□ -1.44
SPG11-223ENST00000560858 ALDH1A1P00352 501 aa6.03□□□□□ -1.44
SPG11-223ENST00000560858 GMPRP36959 345 aa6.03□□□□□ -1.44
SPG11-223ENST00000560858 WNT7BP56706 349 aa6.03□□□□□ -1.44
SPG11-223ENST00000560858 TSHZ2Q9NRE2 1034 aa6.02□□□□□ -1.45
SPG11-223ENST00000560858 LOC100996750A0A140TA64 210 aa6.01□□□□□ -1.45
SPG11-223ENST00000560858 DXOO77932 396 aaKnown RBP6.01□□□□□ -1.45
SPG11-223ENST00000560858 RBM26Q5T8P6 1007 aaKnown RBP6.01□□□□□ -1.45
SPG11-223ENST00000560858 NLRP7Q8WX94 980 aa6.01□□□□□ -1.45
SPG11-223ENST00000560858 KRTAP4-6Q9BYQ5 205 aa6.01□□□□□ -1.45
SPG11-223ENST00000560858 CAPN5O15484 640 aaPredicted RBP6□□□□□ -1.45
SPG11-223ENST00000560858 WASF2Q9Y6W5 498 aa6□□□□□ -1.45
SPG11-223ENST00000560858 SKOR1P84550 965 aa5.99□□□□□ -1.45
SPG11-223ENST00000560858 H3BM21 787 aa5.98□□□□□ -1.45
SPG11-223ENST00000560858 KDM4AO75164 1064 aa5.98□□□□□ -1.45
SPG11-223ENST00000560858 AMER1Q5JTC6 1135 aaPredicted RBP5.98□□□□□ -1.45
SPG11-223ENST00000560858 EHBP1Q8NDI1 1231 aa5.98□□□□□ -1.45
SPG11-223ENST00000560858 PHOX2BQ99453 314 aa5.98□□□□□ -1.45
SPG11-223ENST00000560858 LORP23490 312 aaPredicted RBP5.97□□□□□ -1.45
SPG11-223ENST00000560858 VEGFBP49765 207 aa5.97□□□□□ -1.45
SPG11-223ENST00000560858 USP46P62068 366 aa5.97□□□□□ -1.45
SPG11-223ENST00000560858 TESPA1A2RU30 521 aaPredicted RBP5.96□□□□□ -1.46
SPG11-223ENST00000560858 BMP1P13497 986 aa5.96□□□□□ -1.46
SPG11-223ENST00000560858 CD46P15529 392 aa5.96□□□□□ -1.46
SPG11-223ENST00000560858 SIAH2O43255 324 aa5.95□□□□□ -1.46
SPG11-223ENST00000560858 TRIM46Q7Z4K8 759 aa5.95□□□□□ -1.46
SPG11-223ENST00000560858 SUZ12Q15022 739 aaKnown RBP5.94□□□□□ -1.46
SPG11-223ENST00000560858 ZFP42Q96MM3 310 aa5.94□□□□□ -1.46
SPG11-223ENST00000560858 ERBB4Q15303 1308 aa5.94□□□□□ -1.46
SPG11-223ENST00000560858 JUNDP17535 347 aa5.93□□□□□ -1.46
SPG11-223ENST00000560858 SCARF1Q14162 830 aa5.93□□□□□ -1.46
SPG11-223ENST00000560858 PLEKHG3A1L390 1219 aa5.92□□□□□ -1.46
SPG11-223ENST00000560858 GPR37O15354 613 aa5.92□□□□□ -1.46
SPG11-223ENST00000560858 NUDT12Q9BQG2 462 aa5.92□□□□□ -1.46
SPG11-223ENST00000560858 HOXA2O43364 376 aa5.9□□□□□ -1.46
SPG11-223ENST00000560858 PTCRAQ6ISU1 281 aaPredicted RBP5.9□□□□□ -1.46
SPG11-223ENST00000560858 SH3BP2P78314 561 aa5.89□□□□□ -1.47
SPG11-223ENST00000560858 KCNMA1Q12791 1236 aa5.89□□□□□ -1.47
SPG11-223ENST00000560858 MRPL14Q6P1L8 145 aaKnown RBP5.89□□□□□ -1.47
SPG11-223ENST00000560858 RETREG3Q86VR2 466 aa5.89□□□□□ -1.47
SPG11-223ENST00000560858 GPIHBP1Q8IV16 184 aa5.89□□□□□ -1.47
SPG11-223ENST00000560858 HLA-CQ95604 372 aa5.89□□□□□ -1.47
SPG11-223ENST00000560858 SYMPKQ92797 1274 aaKnown RBP5.88□□□□□ -1.47
SPG11-223ENST00000560858 CCNYL3P0C7X3 344 aa5.87□□□□□ -1.47
SPG11-223ENST00000560858 VSIG8P0DPA2 414 aa5.87□□□□□ -1.47
SPG11-223ENST00000560858 VARSP26640 1264 aaKnown RBP5.87□□□□□ -1.47
SPG11-223ENST00000560858 NUTM1Q86Y26 1132 aa5.87□□□□□ -1.47
SPG11-223ENST00000560858 KCTD17Q8N5Z5 321 aa5.87□□□□□ -1.47
SPG11-223ENST00000560858 PURBQ96QR8 312 aaKnown RBP5.87□□□□□ -1.47
SPG11-223ENST00000560858 MS4A1P11836 297 aa5.86□□□□□ -1.47
SPG11-223ENST00000560858 MDM2Q00987 491 aaPredicted RBP5.86□□□□□ -1.47
SPG11-223ENST00000560858 NNTQ13423 1086 aa5.86□□□□□ -1.47
SPG11-223ENST00000560858 TMEM151AQ8N4L1 468 aa5.86□□□□□ -1.47
SPG11-223ENST00000560858 MPNDQ8N594 471 aa5.86□□□□□ -1.47
SPG11-223ENST00000560858 RTN4Q9NQC3 1192 aaKnown RBP5.86□□□□□ -1.47
SPG11-223ENST00000560858 C6orf229H3BNL8 230 aa5.85□□□□□ -1.47
SPG11-223ENST00000560858 MAN1A2O60476 641 aa5.85□□□□□ -1.47
SPG11-223ENST00000560858 ADH1CP00326 375 aa5.85□□□□□ -1.47
SPG11-223ENST00000560858 WDR4P57081 412 aaKnown RBP5.85□□□□□ -1.47
SPG11-223ENST00000560858 GUCA2AQ02747 115 aa5.85□□□□□ -1.47
SPG11-223ENST00000560858 MAP2K5Q13163 448 aa5.85□□□□□ -1.47
SPG11-223ENST00000560858 BAP1Q92560 729 aa5.85□□□□□ -1.47
SPG11-223ENST00000560858 UNC93B1Q9H1C4 597 aa5.85□□□□□ -1.47
SPG11-223ENST00000560858 EVA1BQ9NVM1 165 aa5.85□□□□□ -1.47
SPG11-223ENST00000560858 IRF6O14896 467 aa5.84□□□□□ -1.47
SPG11-223ENST00000560858 GDF11O95390 407 aa5.84□□□□□ -1.47
SPG11-223ENST00000560858 KRI1Q8N9T8 703 aaKnown RBP5.84□□□□□ -1.47
SPG11-223ENST00000560858 TLL2Q9Y6L7 1015 aa5.84□□□□□ -1.47
SPG11-223ENST00000560858 SOBPA7XYQ1 873 aa5.83□□□□□ -1.48
SPG11-223ENST00000560858 RNF225M0QZC1 329 aaPredicted RBP5.83□□□□□ -1.48
SPG11-223ENST00000560858 FDX1P10109 184 aa5.83□□□□□ -1.48
SPG11-223ENST00000560858 TIMP2P16035 220 aa5.83□□□□□ -1.48
SPG11-223ENST00000560858 PTPRNQ16849 979 aa5.83□□□□□ -1.48
SPG11-223ENST00000560858 LINC01559Q495D7 138 aa5.83□□□□□ -1.48
SPG11-223ENST00000560858 ZNF511Q8NB15 262 aa5.83□□□□□ -1.48
SPG11-223ENST00000560858 MINK1Q8N4C8 1332 aaPredicted RBP5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms