RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 CCDC61Q9Y6R9 512 aa7.15□□□□□ -1.26
VPS13C-209ENST00000560637 DNMT1P26358 1616 aaKnown RBP7.15□□□□□ -1.27
VPS13C-209ENST00000560637 ZRANB1Q9UGI0 708 aa7.15□□□□□ -1.27
VPS13C-209ENST00000560637 RPRD2Q5VT52 1461 aaKnown RBP7.14□□□□□ -1.27
VPS13C-209ENST00000560637 NLRP13Q86W25 1043 aa7.14□□□□□ -1.27
VPS13C-209ENST00000560637 ZNF428Q96B54 188 aa7.14□□□□□ -1.27
VPS13C-209ENST00000560637 RTF1Q92541 710 aaKnown RBP7.14□□□□□ -1.27
VPS13C-209ENST00000560637 NECTIN2Q92692 538 aa7.14□□□□□ -1.27
VPS13C-209ENST00000560637 PREX2Q70Z35 1606 aa7.14□□□□□ -1.27
VPS13C-209ENST00000560637 APAF1O14727 1248 aa7.14□□□□□ -1.27
VPS13C-209ENST00000560637 BCL2L13Q9BXK5 485 aa7.14□□□□□ -1.27
VPS13C-209ENST00000560637 ABCC1P33527 1531 aa7.14□□□□□ -1.27
VPS13C-209ENST00000560637 MLH3Q9UHC1 1453 aa7.13□□□□□ -1.27
VPS13C-209ENST00000560637 CHRNA2Q15822 529 aa7.13□□□□□ -1.27
VPS13C-209ENST00000560637 MADDQ8WXG6 1647 aa7.13□□□□□ -1.27
VPS13C-209ENST00000560637 WASLO00401 505 aaPredicted RBP7.13□□□□□ -1.27
VPS13C-209ENST00000560637 STAC3Q96MF2 364 aa7.13□□□□□ -1.27
VPS13C-209ENST00000560637 ORAI2Q96SN7 254 aa7.13□□□□□ -1.27
VPS13C-209ENST00000560637 FER1L4A9Z1Z3 1794 aa7.13□□□□□ -1.27
VPS13C-209ENST00000560637 RALBP1Q15311 655 aa7.13□□□□□ -1.27
VPS13C-209ENST00000560637 PRDM11Q9NQV5 511 aa7.13□□□□□ -1.27
VPS13C-209ENST00000560637 ZBTB47Q9UFB7 747 aaPredicted RBP7.13□□□□□ -1.27
VPS13C-209ENST00000560637 PHF8Q9UPP1 1060 aa7.13□□□□□ -1.27
VPS13C-209ENST00000560637 GPRASP1Q5JY77 1395 aa7.13□□□□□ -1.27
VPS13C-209ENST00000560637 PREX1Q8TCU6 1659 aa7.13□□□□□ -1.27
VPS13C-209ENST00000560637 USHBP1Q8N6Y0 703 aa7.12□□□□□ -1.27
VPS13C-209ENST00000560637 DMRT2Q9Y5R5 561 aa7.12□□□□□ -1.27
VPS13C-209ENST00000560637 IQSEC2Q5JU85 1478 aa7.12□□□□□ -1.27
VPS13C-209ENST00000560637 RIMS1Q86UR5 1692 aaKnown RBP7.12□□□□□ -1.27
VPS13C-209ENST00000560637 MROH2AA6NES4 1674 aa7.12□□□□□ -1.27
VPS13C-209ENST00000560637 SHANK2Q9UPX8 1470 aa7.12□□□□□ -1.27
VPS13C-209ENST00000560637 NGEFQ8N5V2 710 aa7.12□□□□□ -1.27
VPS13C-209ENST00000560637 DISP3Q9P2K9 1392 aa7.11□□□□□ -1.27
VPS13C-209ENST00000560637 UHRF1BP1Q6BDS2 1440 aa7.11□□□□□ -1.27
VPS13C-209ENST00000560637 NPHP1O15259 732 aa7.11□□□□□ -1.27
VPS13C-209ENST00000560637 CLUAP1Q96AJ1 413 aa7.11□□□□□ -1.27
VPS13C-209ENST00000560637 EMILIN1Q9Y6C2 1016 aa7.11□□□□□ -1.27
VPS13C-209ENST00000560637 DIAPH1O60610 1272 aaKnown RBP7.11□□□□□ -1.27
VPS13C-209ENST00000560637 CDC42BPAQ5VT25 1732 aa7.1□□□□□ -1.27
VPS13C-209ENST00000560637 FBXO41Q8TF61 875 aa7.1□□□□□ -1.27
VPS13C-209ENST00000560637 ACEP12821 1306 aa7.1□□□□□ -1.27
VPS13C-209ENST00000560637 MYBBP1AQ9BQG0 1328 aaKnown RBP7.1□□□□□ -1.27
VPS13C-209ENST00000560637 ZNF335Q9H4Z2 1342 aaPredicted RBP7.1□□□□□ -1.27
VPS13C-209ENST00000560637 DDX54Q8TDD1 881 aaKnown RBP7.1□□□□□ -1.27
VPS13C-209ENST00000560637 ADAMTS8Q9UP79 889 aa7.1□□□□□ -1.27
VPS13C-209ENST00000560637 ADGRL2O95490 1459 aa7.1□□□□□ -1.27
VPS13C-209ENST00000560637 LRRIQ1Q96JM4 1722 aa7.09□□□□□ -1.27
VPS13C-209ENST00000560637 TOM1L2Q6ZVM7 507 aa7.09□□□□□ -1.27
VPS13C-209ENST00000560637 KRT28Q7Z3Y7 464 aa7.09□□□□□ -1.27
VPS13C-209ENST00000560637 SULT6B1Q6IMI4 303 aa7.09□□□□□ -1.27
VPS13C-209ENST00000560637 PLEKHH1Q9ULM0 1364 aa7.09□□□□□ -1.27
VPS13C-209ENST00000560637 PPP2R1AP30153 589 aa7.08□□□□□ -1.28
VPS13C-209ENST00000560637 NSD3Q9BZ95 1437 aa7.08□□□□□ -1.28
VPS13C-209ENST00000560637 CCDC136Q96JN2 1154 aa7.08□□□□□ -1.28
VPS13C-209ENST00000560637 TMEM2Q9UHN6 1383 aa7.08□□□□□ -1.28
VPS13C-209ENST00000560637 LMTK3Q96Q04 1460 aa7.08□□□□□ -1.28
VPS13C-209ENST00000560637 PTPRTO14522 1441 aa7.08□□□□□ -1.28
VPS13C-209ENST00000560637 CADPS2Q86UW7 1296 aa7.08□□□□□ -1.28
VPS13C-209ENST00000560637 DIP2CQ9Y2E4 1556 aa7.08□□□□□ -1.28
VPS13C-209ENST00000560637 APBB1O00213 710 aa7.07□□□□□ -1.28
VPS13C-209ENST00000560637 EIF2S2P20042 333 aaKnown RBP7.07□□□□□ -1.28
VPS13C-209ENST00000560637 PRKAR2BP31323 418 aa7.07□□□□□ -1.28
VPS13C-209ENST00000560637 FTSJ3Q8IY81 847 aaKnown RBP7.07□□□□□ -1.28
VPS13C-209ENST00000560637 RAPGEF4Q8WZA2 1011 aa7.07□□□□□ -1.28
VPS13C-209ENST00000560637 METP08581 1390 aa7.07□□□□□ -1.28
VPS13C-209ENST00000560637 THUMPD2Q9BTF0 503 aaKnown RBP7.07□□□□□ -1.28
VPS13C-209ENST00000560637 CDC42BPBQ9Y5S2 1711 aa7.07□□□□□ -1.28
VPS13C-209ENST00000560637 SETD1BQ9UPS6 1966 aaKnown RBP7.07□□□□□ -1.28
VPS13C-209ENST00000560637 PRAG1Q86YV5 1406 aa7.07□□□□□ -1.28
VPS13C-209ENST00000560637 CCER2I3L3R5 266 aa7.07□□□□□ -1.28
VPS13C-209ENST00000560637 PLIN1O60240 522 aa7.07□□□□□ -1.28
VPS13C-209ENST00000560637 RIPK4P57078 832 aa7.07□□□□□ -1.28
VPS13C-209ENST00000560637 NGLY1Q96IV0 654 aa7.07□□□□□ -1.28
VPS13C-209ENST00000560637 TESK2Q96S53 571 aa7.07□□□□□ -1.28
VPS13C-209ENST00000560637 FOXD4L1Q9NU39 408 aa7.06□□□□□ -1.28
VPS13C-209ENST00000560637 TBX22Q9Y458 520 aa7.06□□□□□ -1.28
VPS13C-209ENST00000560637 KAT6BQ8WYB5 2073 aa7.06□□□□□ -1.28
VPS13C-209ENST00000560637 TEFQ10587 303 aa7.06□□□□□ -1.28
VPS13C-209ENST00000560637 C19orf44Q9H6X5 657 aa7.06□□□□□ -1.28
VPS13C-209ENST00000560637 ADGBQ8N7X0 1667 aa7.06□□□□□ -1.28
VPS13C-209ENST00000560637 MSH6P52701 1360 aa7.06□□□□□ -1.28
VPS13C-209ENST00000560637 PRDM15P57071 1507 aaPredicted RBP7.06□□□□□ -1.28
VPS13C-209ENST00000560637 MSH5O43196 834 aa7.06□□□□□ -1.28
VPS13C-209ENST00000560637 DCTN1Q14203 1278 aa7.06□□□□□ -1.28
VPS13C-209ENST00000560637 C1orf141Q5JVX7 400 aa7.06□□□□□ -1.28
VPS13C-209ENST00000560637 SLC4A10Q6U841 1118 aa7.06□□□□□ -1.28
VPS13C-209ENST00000560637 ZNF692Q9BU19 519 aaPredicted RBP7.06□□□□□ -1.28
VPS13C-209ENST00000560637 CDCA7LQ96GN5 454 aa7.05□□□□□ -1.28
VPS13C-209ENST00000560637 ARHGEF5Q12774 1597 aa7.05□□□□□ -1.28
VPS13C-209ENST00000560637 TOM1O60784 492 aa7.05□□□□□ -1.28
VPS13C-209ENST00000560637 C8orf37Q96NL8 207 aa7.05□□□□□ -1.28
VPS13C-209ENST00000560637 ATAD2Q6PL18 1390 aa7.05□□□□□ -1.28
VPS13C-209ENST00000560637 PLA2R1Q13018 1463 aa7.05□□□□□ -1.28
VPS13C-209ENST00000560637 SCAF11Q99590 1463 aaKnown RBP7.05□□□□□ -1.28
VPS13C-209ENST00000560637 MAST1Q9Y2H9 1570 aa7.05□□□□□ -1.28
VPS13C-209ENST00000560637 HSP90AB2PQ58FF8 381 aa7.05□□□□□ -1.28
VPS13C-209ENST00000560637 MIS18AQ9NYP9 233 aa7.05□□□□□ -1.28
VPS13C-209ENST00000560637 B4GALNT3Q6L9W6 998 aa7.04□□□□□ -1.28
VPS13C-209ENST00000560637 ERICH6Q7L0X2 663 aa7.04□□□□□ -1.28
VPS13C-209ENST00000560637 TCP11L2Q8N4U5 519 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms