RNA–Protein interactions for RNA: ENST00000560532.1

SLTM-223, Transcript of SAFB like transcription modulator, human

TSL 4

Gene SLTM, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SLTM-223	ENST00000560532	SALL2	Q9Y467	1007 aa	Predicted RBP	10.99	□□□□□ -0.65
SLTM-223	ENST00000560532	WNT7A	O00755	349 aa		10.98	□□□□□ -0.65
SLTM-223	ENST00000560532	SNIP1	Q8TAD8	396 aa	Known RBP	10.98	□□□□□ -0.65
SLTM-223	ENST00000560532	PHOX2B	Q99453	314 aa		10.98	□□□□□ -0.65
SLTM-223	ENST00000560532	ATP13A2	Q9NQ11	1180 aa		10.98	□□□□□ -0.65
SLTM-223	ENST00000560532	TESPA1	A2RU30	521 aa	Predicted RBP	10.97	□□□□□ -0.65
SLTM-223	ENST00000560532	SNRPB	P14678	240 aa	Known RBP	10.97	□□□□□ -0.65
SLTM-223	ENST00000560532	TRIM32	Q13049	653 aa		10.97	□□□□□ -0.65
SLTM-223	ENST00000560532		J3QL48	77 aa		10.96	□□□□□ -0.65
SLTM-223	ENST00000560532	MRGPRX2	Q96LB1	330 aa		10.96	□□□□□ -0.65
SLTM-223	ENST00000560532	STK17A	Q9UEE5	414 aa		10.96	□□□□□ -0.65
SLTM-223	ENST00000560532	WIPF1	O43516	503 aa		10.95	□□□□□ -0.66
SLTM-223	ENST00000560532	INSM1	Q01101	510 aa	Predicted RBP	10.94	□□□□□ -0.66
SLTM-223	ENST00000560532	LCE2C	Q5TA81	110 aa		10.94	□□□□□ -0.66
SLTM-223	ENST00000560532	SMYD5	Q6GMV2	418 aa		10.94	□□□□□ -0.66
SLTM-223	ENST00000560532	GRIPAP1	Q4V328	841 aa		10.93	□□□□□ -0.66
SLTM-223	ENST00000560532	HPS1	Q92902	700 aa		10.92	□□□□□ -0.66
SLTM-223	ENST00000560532	TERT	O14746	1132 aa	Known RBP	10.91	□□□□□ -0.66
SLTM-223	ENST00000560532		Q3C1V9	767 aa		10.91	□□□□□ -0.66
SLTM-223	ENST00000560532	TRIM47	Q96LD4	638 aa		10.91	□□□□□ -0.66
SLTM-223	ENST00000560532	MMP16	P51512	607 aa		10.9	□□□□□ -0.66
SLTM-223	ENST00000560532	SENP2	Q9HC62	589 aa		10.9	□□□□□ -0.66
SLTM-223	ENST00000560532	CCDC24	Q8N4L8	307 aa		10.89	□□□□□ -0.67
SLTM-223	ENST00000560532	USB1	Q9BQ65	265 aa	Known RBP	10.87	□□□□□ -0.67
SLTM-223	ENST00000560532	REPIN1	Q9BWE0	567 aa	Known RBP	10.87	□□□□□ -0.67
SLTM-223	ENST00000560532	DXO	O77932	396 aa	Known RBP	10.86	□□□□□ -0.67
SLTM-223	ENST00000560532	HLA-C	Q95604	372 aa		10.86	□□□□□ -0.67
SLTM-223	ENST00000560532	RC3H1	Q5TC82	1133 aa	Known RBP	10.85	□□□□□ -0.67
SLTM-223	ENST00000560532	GPIHBP1	Q8IV16	184 aa		10.85	□□□□□ -0.67
SLTM-223	ENST00000560532	CD46	P15529	392 aa		10.84	□□□□□ -0.67
SLTM-223	ENST00000560532	SKOR1	P84550	965 aa		10.84	□□□□□ -0.67
SLTM-223	ENST00000560532	KIFC2	Q96AC6	838 aa		10.83	□□□□□ -0.68
SLTM-223	ENST00000560532	KDM4A	O75164	1064 aa		10.82	□□□□□ -0.68
SLTM-223	ENST00000560532	ALDH1A1	P00352	501 aa		10.81	□□□□□ -0.68
SLTM-223	ENST00000560532	WNT7B	P56706	349 aa		10.79	□□□□□ -0.68
SLTM-223	ENST00000560532	GUCA2A	Q02747	115 aa		10.78	□□□□□ -0.68
SLTM-223	ENST00000560532	BMP1	P13497	986 aa		10.77	□□□□□ -0.69
SLTM-223	ENST00000560532	SLC16A10	Q8TF71	515 aa		10.76	□□□□□ -0.69
SLTM-223	ENST00000560532	HOXA2	O43364	376 aa		10.75	□□□□□ -0.69
SLTM-223	ENST00000560532	MDM2	Q00987	491 aa	Predicted RBP	10.75	□□□□□ -0.69
SLTM-223	ENST00000560532	SYMPK	Q92797	1274 aa	Known RBP	10.75	□□□□□ -0.69
SLTM-223	ENST00000560532	JUND	P17535	347 aa		10.74	□□□□□ -0.69
SLTM-223	ENST00000560532	USP46	P62068	366 aa		10.74	□□□□□ -0.69
SLTM-223	ENST00000560532	NXF1	Q9UBU9	619 aa	Known RBP	10.74	□□□□□ -0.69
SLTM-223	ENST00000560532	GMPR	P36959	345 aa		10.73	□□□□□ -0.69
SLTM-223	ENST00000560532	VEGFB	P49765	207 aa		10.73	□□□□□ -0.69
SLTM-223	ENST00000560532	EHBP1	Q8NDI1	1231 aa		10.73	□□□□□ -0.69
SLTM-223	ENST00000560532	MAP2K5	Q13163	448 aa		10.72	□□□□□ -0.69
SLTM-223	ENST00000560532	TRIM46	Q7Z4K8	759 aa		10.72	□□□□□ -0.69
SLTM-223	ENST00000560532	WASF2	Q9Y6W5	498 aa		10.72	□□□□□ -0.69
SLTM-223	ENST00000560532	CAPN5	O15484	640 aa	Predicted RBP	10.71	□□□□□ -0.69
SLTM-223	ENST00000560532	PTCRA	Q6ISU1	281 aa	Predicted RBP	10.71	□□□□□ -0.69
SLTM-223	ENST00000560532	NUDT12	Q9BQG2	462 aa		10.71	□□□□□ -0.69
SLTM-223	ENST00000560532	FAM181B	A6NEQ2	426 aa		10.7	□□□□□ -0.7
SLTM-223	ENST00000560532	SIAH2	O43255	324 aa		10.69	□□□□□ -0.7
SLTM-223	ENST00000560532	ZSCAN1	Q8NBB4	408 aa		10.68	□□□□□ -0.7
SLTM-223	ENST00000560532	IRF7	Q92985	503 aa		10.68	□□□□□ -0.7
SLTM-223	ENST00000560532	IRF6	O14896	467 aa		10.67	□□□□□ -0.7
SLTM-223	ENST00000560532	RETREG3	Q86VR2	466 aa		10.66	□□□□□ -0.7
SLTM-223	ENST00000560532	LOR	P23490	312 aa	Predicted RBP	10.65	□□□□□ -0.7
SLTM-223	ENST00000560532	SH3BP2	P78314	561 aa		10.64	□□□□□ -0.71
SLTM-223	ENST00000560532	ERBB4	Q15303	1308 aa		10.63	□□□□□ -0.71
SLTM-223	ENST00000560532		H3BM21	787 aa		10.63	□□□□□ -0.71
SLTM-223	ENST00000560532	NUTM1	Q86Y26	1132 aa		10.63	□□□□□ -0.71
SLTM-223	ENST00000560532	NPAS3	Q8IXF0	933 aa		10.63	□□□□□ -0.71
SLTM-223	ENST00000560532	TLL2	Q9Y6L7	1015 aa		10.63	□□□□□ -0.71
SLTM-223	ENST00000560532	C6orf229	H3BNL8	230 aa		10.62	□□□□□ -0.71
SLTM-223	ENST00000560532	LINC01559	Q495D7	138 aa		10.62	□□□□□ -0.71
SLTM-223	ENST00000560532	CCDC102A	Q96A19	550 aa		10.62	□□□□□ -0.71
SLTM-223	ENST00000560532	ZFP42	Q96MM3	310 aa		10.62	□□□□□ -0.71
SLTM-223	ENST00000560532	CCNYL3	P0C7X3	344 aa		10.61	□□□□□ -0.71
SLTM-223	ENST00000560532	GPCPD1	Q9NPB8	672 aa		10.61	□□□□□ -0.71
SLTM-223	ENST00000560532	FAM217B	Q9NTX9	383 aa	Predicted RBP	10.61	□□□□□ -0.71
SLTM-223	ENST00000560532	FDX1	P10109	184 aa		10.6	□□□□□ -0.71
SLTM-223	ENST00000560532	MS4A1	P11836	297 aa		10.6	□□□□□ -0.71
SLTM-223	ENST00000560532	MINK1	Q8N4C8	1332 aa	Predicted RBP	10.59	□□□□□ -0.71
SLTM-223	ENST00000560532	UNC93B1	Q9H1C4	597 aa		10.59	□□□□□ -0.71
SLTM-223	ENST00000560532	PCDHGC3	Q9UN70	934 aa		10.59	□□□□□ -0.71
SLTM-223	ENST00000560532	CLCN1	P35523	988 aa		10.58	□□□□□ -0.72
SLTM-223	ENST00000560532	PLCB2	Q00722	1185 aa		10.58	□□□□□ -0.72
SLTM-223	ENST00000560532	BAP1	Q92560	729 aa		10.57	□□□□□ -0.72
SLTM-223	ENST00000560532	NNT	Q13423	1086 aa		10.56	□□□□□ -0.72
SLTM-223	ENST00000560532	KRI1	Q8N9T8	703 aa	Known RBP	10.56	□□□□□ -0.72
SLTM-223	ENST00000560532	SOBP	A7XYQ1	873 aa		10.55	□□□□□ -0.72
SLTM-223	ENST00000560532	PTPRN	Q16849	979 aa		10.55	□□□□□ -0.72
SLTM-223	ENST00000560532	MRPL14	Q6P1L8	145 aa	Known RBP	10.55	□□□□□ -0.72
SLTM-223	ENST00000560532	PURB	Q96QR8	312 aa	Known RBP	10.55	□□□□□ -0.72
SLTM-223	ENST00000560532	ZNF511	Q8NB15	262 aa		10.53	□□□□□ -0.72
SLTM-223	ENST00000560532	EVA1B	Q9NVM1	165 aa		10.53	□□□□□ -0.72
SLTM-223	ENST00000560532	PLEKHG3	A1L390	1219 aa		10.52	□□□□□ -0.73
SLTM-223	ENST00000560532	TULP1	O00294	542 aa	Predicted RBP	10.52	□□□□□ -0.73
SLTM-223	ENST00000560532	WDR4	P57081	412 aa	Known RBP	10.52	□□□□□ -0.73
SLTM-223	ENST00000560532	KCNH2	Q12809	1159 aa		10.52	□□□□□ -0.73
SLTM-223	ENST00000560532	SCARF1	Q14162	830 aa		10.52	□□□□□ -0.73
SLTM-223	ENST00000560532	TIMP2	P16035	220 aa		10.51	□□□□□ -0.73
SLTM-223	ENST00000560532	NDUFV2	P19404	249 aa		10.51	□□□□□ -0.73
SLTM-223	ENST00000560532	VARS	P26640	1264 aa	Known RBP	10.5	□□□□□ -0.73
SLTM-223	ENST00000560532	PRR7	Q8TB68	274 aa		10.5	□□□□□ -0.73
SLTM-223	ENST00000560532	ADH1C	P00326	375 aa		10.49	□□□□□ -0.73
SLTM-223	ENST00000560532	SPIRE2	Q8WWL2	714 aa		10.49	□□□□□ -0.73

Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms