RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 ESCO1Q5FWF5 840 aa27.06■■□□□ 1.92
TSPAN3-208ENST00000560514 HFM1A2PYH4 1435 aa27.06■■□□□ 1.92
TSPAN3-208ENST00000560514 MARF1Q9Y4F3 1742 aaKnown RBP27.01■■□□□ 1.91
TSPAN3-208ENST00000560514 RPGRIP1LQ68CZ1 1315 aa27■■□□□ 1.91
TSPAN3-208ENST00000560514 MYOM2P54296 1465 aa27■■□□□ 1.91
TSPAN3-208ENST00000560514 PRAG1Q86YV5 1406 aa26.99■■□□□ 1.91
TSPAN3-208ENST00000560514 EP400Q96L91 3159 aa26.99■■□□□ 1.91
TSPAN3-208ENST00000560514 GJD4Q96KN9 370 aaPredicted RBP26.99■■□□□ 1.91
TSPAN3-208ENST00000560514 LRPPRCP42704 1394 aaKnown RBP26.98■■□□□ 1.91
TSPAN3-208ENST00000560514 BCL9LQ86UU0 1499 aa26.98■■□□□ 1.91
TSPAN3-208ENST00000560514 FOXO3O43524 673 aa26.97■■□□□ 1.91
TSPAN3-208ENST00000560514 XPCQ01831 940 aaPredicted RBP26.96■■□□□ 1.91
TSPAN3-208ENST00000560514 PPARGC1BQ86YN6 1023 aaKnown RBP26.95■■□□□ 1.9
TSPAN3-208ENST00000560514 CDC42BPGQ6DT37 1551 aa26.95■■□□□ 1.9
TSPAN3-208ENST00000560514 PXDNQ92626 1479 aa26.93■■□□□ 1.9
TSPAN3-208ENST00000560514 PPLO60437 1756 aa26.92■■□□□ 1.9
TSPAN3-208ENST00000560514 NUTM2FA1L443 756 aa26.9■■□□□ 1.9
TSPAN3-208ENST00000560514 SF3B2Q13435 895 aaKnown RBP26.9■■□□□ 1.9
TSPAN3-208ENST00000560514 UNC5CLQ8IV45 518 aa26.9■■□□□ 1.9
TSPAN3-208ENST00000560514 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.9■■□□□ 1.9
TSPAN3-208ENST00000560514 BLMP54132 1417 aaPredicted RBP26.9■■□□□ 1.9
TSPAN3-208ENST00000560514 NAIPQ13075 1403 aa26.88■■□□□ 1.89
TSPAN3-208ENST00000560514 SLC4A1APQ9BWU0 796 aaKnown RBP26.87■■□□□ 1.89
TSPAN3-208ENST00000560514 STK26Q9P289 416 aa26.87■■□□□ 1.89
TSPAN3-208ENST00000560514 HAP1P54257 671 aaPredicted RBP26.86■■□□□ 1.89
TSPAN3-208ENST00000560514 RALGAPBQ86X10 1494 aa26.85■■□□□ 1.89
TSPAN3-208ENST00000560514 WAPLQ7Z5K2 1190 aa26.83■■□□□ 1.89
TSPAN3-208ENST00000560514 SLIT2O94813 1529 aa26.82■■□□□ 1.88
TSPAN3-208ENST00000560514 GLI3P10071 1580 aa26.82■■□□□ 1.88
TSPAN3-208ENST00000560514 SPATA31A3Q5VYP0 1347 aa26.81■■□□□ 1.88
TSPAN3-208ENST00000560514 BRWD3Q6RI45 1802 aa26.81■■□□□ 1.88
TSPAN3-208ENST00000560514 CCDC144AA2RUR9 1427 aa26.81■■□□□ 1.88
TSPAN3-208ENST00000560514 KIF1AQ12756 1690 aa26.8■■□□□ 1.88
TSPAN3-208ENST00000560514 DEFB132Q7Z7B7 95 aa26.8■■□□□ 1.88
TSPAN3-208ENST00000560514 CCDC9Q9Y3X0 531 aaKnown RBP26.8■■□□□ 1.88
TSPAN3-208ENST00000560514 RRBP1Q9P2E9 1410 aaKnown RBP26.79■■□□□ 1.88
TSPAN3-208ENST00000560514 KRT28Q7Z3Y7 464 aa26.78■■□□□ 1.88
TSPAN3-208ENST00000560514 SEPT12Q8IYM1 358 aa26.78■■□□□ 1.88
TSPAN3-208ENST00000560514 ADGRF5Q8IZF2 1346 aa26.78■■□□□ 1.88
TSPAN3-208ENST00000560514 USP32Q8NFA0 1604 aa26.78■■□□□ 1.88
TSPAN3-208ENST00000560514 TECPR2O15040 1411 aa26.77■■□□□ 1.88
TSPAN3-208ENST00000560514 RGL3Q3MIN7 710 aa26.76■■□□□ 1.87
TSPAN3-208ENST00000560514 FMN2Q9NZ56 1722 aa26.76■■□□□ 1.87
TSPAN3-208ENST00000560514 PSME1Q06323 249 aa26.75■■□□□ 1.87
TSPAN3-208ENST00000560514 ABCC11Q96J66 1382 aa26.74■■□□□ 1.87
TSPAN3-208ENST00000560514 PLEKHG5O94827 1062 aa26.74■■□□□ 1.87
TSPAN3-208ENST00000560514 VPS72Q15906 364 aa26.74■■□□□ 1.87
TSPAN3-208ENST00000560514 KNDC1Q76NI1 1749 aa26.73■■□□□ 1.87
TSPAN3-208ENST00000560514 TMEM132EQ6IEE7 984 aa26.73■■□□□ 1.87
TSPAN3-208ENST00000560514 ANKRD30BQ9BXX2 1392 aa26.72■■□□□ 1.87
TSPAN3-208ENST00000560514 PLEKHH1Q9ULM0 1364 aa26.72■■□□□ 1.87
TSPAN3-208ENST00000560514 A0A0G2JS52 829 aa26.72■■□□□ 1.87
TSPAN3-208ENST00000560514 MYT1Q01538 1121 aa26.72■■□□□ 1.87
TSPAN3-208ENST00000560514 LMOD2Q6P5Q4 547 aa26.72■■□□□ 1.87
TSPAN3-208ENST00000560514 KRT27Q7Z3Y8 459 aa26.72■■□□□ 1.87
TSPAN3-208ENST00000560514 CABLES1Q8TDN4 633 aa26.7■■□□□ 1.86
TSPAN3-208ENST00000560514 PHF8Q9UPP1 1060 aa26.7■■□□□ 1.86
TSPAN3-208ENST00000560514 TNS3Q68CZ2 1445 aa26.7■■□□□ 1.86
TSPAN3-208ENST00000560514 NWD2Q9ULI1 1742 aa26.69■■□□□ 1.86
TSPAN3-208ENST00000560514 LRP5O75197 1615 aa26.68■■□□□ 1.86
TSPAN3-208ENST00000560514 BAG6P46379 1132 aa26.68■■□□□ 1.86
TSPAN3-208ENST00000560514 PLCH1Q4KWH8 1693 aa26.68■■□□□ 1.86
TSPAN3-208ENST00000560514 YTHDC2Q9H6S0 1430 aaKnown RBP26.67■■□□□ 1.86
TSPAN3-208ENST00000560514 RGPD8O14715 1765 aaPredicted RBP26.67■■□□□ 1.86
TSPAN3-208ENST00000560514 IFT172Q9UG01 1749 aa26.67■■□□□ 1.86
TSPAN3-208ENST00000560514 ONECUT3O60422 494 aaPredicted RBP26.66■■□□□ 1.86
TSPAN3-208ENST00000560514 ARHGEF10O15013 1369 aa26.65■■□□□ 1.86
TSPAN3-208ENST00000560514 SBNO1A3KN83 1393 aa26.63■■□□□ 1.85
TSPAN3-208ENST00000560514 PSDA5PKW4 1024 aaPredicted RBP26.63■■□□□ 1.85
TSPAN3-208ENST00000560514 SIRT1Q96EB6 747 aa26.63■■□□□ 1.85
TSPAN3-208ENST00000560514 PIK3C2GO75747 1445 aa26.63■■□□□ 1.85
TSPAN3-208ENST00000560514 SPATA31E1Q6ZUB1 1445 aa26.62■■□□□ 1.85
TSPAN3-208ENST00000560514 ABCA3Q99758 1704 aa26.59■■□□□ 1.85
TSPAN3-208ENST00000560514 NRXN1Q9ULB1 1477 aa26.59■■□□□ 1.85
TSPAN3-208ENST00000560514 DHX57Q6P158 1386 aaKnown RBP26.58■■□□□ 1.85
TSPAN3-208ENST00000560514 FAM83GA6ND36 823 aa26.58■■□□□ 1.85
TSPAN3-208ENST00000560514 FAM98CQ17RN3 349 aaKnown RBP26.58■■□□□ 1.85
TSPAN3-208ENST00000560514 HRCP23327 699 aa26.57■■□□□ 1.84
TSPAN3-208ENST00000560514 SAFB2Q14151 953 aaKnown RBP eCLIP26.57■■□□□ 1.84
TSPAN3-208ENST00000560514 C14orf93Q9H972 538 aaKnown RBP26.55■■□□□ 1.84
TSPAN3-208ENST00000560514 BTG4Q9NY30 223 aa26.55■■□□□ 1.84
TSPAN3-208ENST00000560514 PMFBP1Q8TBY8 1022 aa26.54■■□□□ 1.84
TSPAN3-208ENST00000560514 MPHOSPH9Q99550 1183 aa26.54■■□□□ 1.84
TSPAN3-208ENST00000560514 PRAM1Q96QH2 718 aa26.53■■□□□ 1.84
TSPAN3-208ENST00000560514 POGKQ9P215 609 aa26.53■■□□□ 1.84
TSPAN3-208ENST00000560514 RGPD1P0DJD0 1748 aa26.52■■□□□ 1.84
TSPAN3-208ENST00000560514 EN1Q05925 392 aaPredicted RBP26.52■■□□□ 1.84
TSPAN3-208ENST00000560514 NRAPQ86VF7 1730 aa26.51■■□□□ 1.83
TSPAN3-208ENST00000560514 CFAP70Q5T0N1 1121 aa26.5■■□□□ 1.83
TSPAN3-208ENST00000560514 ANKARQ7Z5J8 1434 aa26.49■■□□□ 1.83
TSPAN3-208ENST00000560514 GPRASP1Q5JY77 1395 aa26.49■■□□□ 1.83
TSPAN3-208ENST00000560514 COL14A1Q05707 1796 aaKnown RBP26.48■■□□□ 1.83
TSPAN3-208ENST00000560514 R3HDM1Q15032 1099 aaKnown RBP26.47■■□□□ 1.83
TSPAN3-208ENST00000560514 FAM182BQ5T319 152 aa26.45■■□□□ 1.82
TSPAN3-208ENST00000560514 EIF3AQ14152 1382 aaKnown RBP26.44■■□□□ 1.82
TSPAN3-208ENST00000560514 SPATA31A5Q5VU36 1347 aa26.43■■□□□ 1.82
TSPAN3-208ENST00000560514 SPATA31A7Q8IWB4 1347 aa26.43■■□□□ 1.82
TSPAN3-208ENST00000560514 TRPM3Q9HCF6 1732 aaPredicted RBP26.43■■□□□ 1.82
TSPAN3-208ENST00000560514 DLC1Q96QB1 1528 aa26.41■■□□□ 1.82
TSPAN3-208ENST00000560514 ADGRB2O60241 1585 aa26.41■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms