RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 KIF1BO60333 1816 aa17.24■□□□□ 0.35
LDLR-212ENST00000560467 FOXD1Q16676 465 aa17.24■□□□□ 0.35
LDLR-212ENST00000560467 CCER1Q8TC90 406 aaPredicted RBP17.24■□□□□ 0.35
LDLR-212ENST00000560467 XPCQ01831 940 aaPredicted RBP17.23■□□□□ 0.35
LDLR-212ENST00000560467 FNBP4Q8N3X1 1017 aaPredicted RBP17.23■□□□□ 0.35
LDLR-212ENST00000560467 TRPC5Q9UL62 973 aaPredicted RBP17.23■□□□□ 0.35
LDLR-212ENST00000560467 ESCO1Q5FWF5 840 aa17.22■□□□□ 0.35
LDLR-212ENST00000560467 ATAD2Q6PL18 1390 aa17.22■□□□□ 0.35
LDLR-212ENST00000560467 MYOM2P54296 1465 aa17.22■□□□□ 0.35
LDLR-212ENST00000560467 ADGRF5Q8IZF2 1346 aa17.21■□□□□ 0.35
LDLR-212ENST00000560467 ATRNO75882 1429 aa17.21■□□□□ 0.35
LDLR-212ENST00000560467 SRCAPQ6ZRS2 3230 aa17.21■□□□□ 0.34
LDLR-212ENST00000560467 NPHP3Q7Z494 1330 aa17.21■□□□□ 0.34
LDLR-212ENST00000560467 CDC42BPGQ6DT37 1551 aa17.2■□□□□ 0.34
LDLR-212ENST00000560467 PXDNQ92626 1479 aa17.2■□□□□ 0.34
LDLR-212ENST00000560467 RAB3GAP2Q9H2M9 1393 aa17.2■□□□□ 0.34
LDLR-212ENST00000560467 STK26Q9P289 416 aa17.2■□□□□ 0.34
LDLR-212ENST00000560467 NUTM2FA1L443 756 aa17.19■□□□□ 0.34
LDLR-212ENST00000560467 FOXO3O43524 673 aa17.19■□□□□ 0.34
LDLR-212ENST00000560467 WAPLQ7Z5K2 1190 aa17.18■□□□□ 0.34
LDLR-212ENST00000560467 COL22A1Q8NFW1 1626 aaPredicted RBP17.18■□□□□ 0.34
LDLR-212ENST00000560467 PPLO60437 1756 aa17.17■□□□□ 0.34
LDLR-212ENST00000560467 PLEKHH1Q9ULM0 1364 aa17.17■□□□□ 0.34
LDLR-212ENST00000560467 RGL3Q3MIN7 710 aa17.17■□□□□ 0.34
LDLR-212ENST00000560467 BCL9LQ86UU0 1499 aa17.17■□□□□ 0.34
LDLR-212ENST00000560467 LRPPRCP42704 1394 aaKnown RBP17.16■□□□□ 0.34
LDLR-212ENST00000560467 TECPR2O15040 1411 aa17.16■□□□□ 0.34
LDLR-212ENST00000560467 CCDC144AA2RUR9 1427 aa17.15■□□□□ 0.34
LDLR-212ENST00000560467 SPATA31E1Q6ZUB1 1445 aa17.15■□□□□ 0.34
LDLR-212ENST00000560467 TMEM132EQ6IEE7 984 aa17.15■□□□□ 0.34
LDLR-212ENST00000560467 ABCC11Q96J66 1382 aa17.13■□□□□ 0.33
LDLR-212ENST00000560467 ANKRD30BQ9BXX2 1392 aa17.13■□□□□ 0.33
LDLR-212ENST00000560467 ZEB1P37275 1124 aaPredicted RBP17.11■□□□□ 0.33
LDLR-212ENST00000560467 GJD4Q96KN9 370 aaPredicted RBP17.11■□□□□ 0.33
LDLR-212ENST00000560467 PIK3C2GO75747 1445 aa17.11■□□□□ 0.33
LDLR-212ENST00000560467 MPHOSPH9Q99550 1183 aa17.09■□□□□ 0.33
LDLR-212ENST00000560467 SPATA31A3Q5VYP0 1347 aa17.09■□□□□ 0.33
LDLR-212ENST00000560467 YTHDC2Q9H6S0 1430 aaKnown RBP17.09■□□□□ 0.33
LDLR-212ENST00000560467 EP400Q96L91 3159 aa17.09■□□□□ 0.33
LDLR-212ENST00000560467 ZRANB1Q9UGI0 708 aa17.08■□□□□ 0.32
LDLR-212ENST00000560467 SLIT2O94813 1529 aa17.07■□□□□ 0.32
LDLR-212ENST00000560467 RALGAPBQ86X10 1494 aa17.07■□□□□ 0.32
LDLR-212ENST00000560467 UNC5CLQ8IV45 518 aa17.07■□□□□ 0.32
LDLR-212ENST00000560467 CLSPNQ9HAW4 1339 aa17.06■□□□□ 0.32
LDLR-212ENST00000560467 KRT28Q7Z3Y7 464 aa17.06■□□□□ 0.32
LDLR-212ENST00000560467 PLEKHG5O94827 1062 aa17.05■□□□□ 0.32
LDLR-212ENST00000560467 GLI3P10071 1580 aa17.05■□□□□ 0.32
LDLR-212ENST00000560467 KNDC1Q76NI1 1749 aa17.04■□□□□ 0.32
LDLR-212ENST00000560467 FMN2Q9NZ56 1722 aa17.04■□□□□ 0.32
LDLR-212ENST00000560467 CCDC125Q86Z20 511 aa17.04■□□□□ 0.32
LDLR-212ENST00000560467 CABLES1Q8TDN4 633 aa17.04■□□□□ 0.32
LDLR-212ENST00000560467 TNS3Q68CZ2 1445 aa17.04■□□□□ 0.32
LDLR-212ENST00000560467 C14orf93Q9H972 538 aaKnown RBP17.03■□□□□ 0.32
LDLR-212ENST00000560467 PHF8Q9UPP1 1060 aa17.03■□□□□ 0.32
LDLR-212ENST00000560467 IFT172Q9UG01 1749 aa17.03■□□□□ 0.32
LDLR-212ENST00000560467 USP32Q8NFA0 1604 aa17.03■□□□□ 0.32
LDLR-212ENST00000560467 KIF1AQ12756 1690 aa17.02■□□□□ 0.32
LDLR-212ENST00000560467 SAFB2Q14151 953 aaKnown RBP eCLIP17.02■□□□□ 0.32
LDLR-212ENST00000560467 CFAP70Q5T0N1 1121 aa17.02■□□□□ 0.32
LDLR-212ENST00000560467 MARF1Q9Y4F3 1742 aaKnown RBP17.01■□□□□ 0.31
LDLR-212ENST00000560467 HAP1P54257 671 aaPredicted RBP17.01■□□□□ 0.31
LDLR-212ENST00000560467 SIRT1Q96EB6 747 aa17.01■□□□□ 0.31
LDLR-212ENST00000560467 BLMP54132 1417 aaPredicted RBP17.01■□□□□ 0.31
LDLR-212ENST00000560467 NRXN1Q9ULB1 1477 aa17■□□□□ 0.31
LDLR-212ENST00000560467 SEPT12Q8IYM1 358 aa17■□□□□ 0.31
LDLR-212ENST00000560467 PRAM1Q96QH2 718 aa17■□□□□ 0.31
LDLR-212ENST00000560467 TNKS1BP1Q9C0C2 1729 aaKnown RBP17■□□□□ 0.31
LDLR-212ENST00000560467 DHX57Q6P158 1386 aaKnown RBP17■□□□□ 0.31
LDLR-212ENST00000560467 VPS72Q15906 364 aa16.99■□□□□ 0.31
LDLR-212ENST00000560467 LMOD2Q6P5Q4 547 aa16.99■□□□□ 0.31
LDLR-212ENST00000560467 DEFB132Q7Z7B7 95 aa16.99■□□□□ 0.31
LDLR-212ENST00000560467 PSME1Q06323 249 aa16.98■□□□□ 0.31
LDLR-212ENST00000560467 SBNO1A3KN83 1393 aa16.98■□□□□ 0.31
LDLR-212ENST00000560467 CCDC9Q9Y3X0 531 aaKnown RBP16.97■□□□□ 0.31
LDLR-212ENST00000560467 PMFBP1Q8TBY8 1022 aa16.96■□□□□ 0.31
LDLR-212ENST00000560467 ARHGEF10O15013 1369 aa16.96■□□□□ 0.31
LDLR-212ENST00000560467 FAM83GA6ND36 823 aa16.94■□□□□ 0.3
LDLR-212ENST00000560467 POGKQ9P215 609 aa16.94■□□□□ 0.3
LDLR-212ENST00000560467 HIRIP3Q9BW71 556 aaPredicted RBP16.93■□□□□ 0.3
LDLR-212ENST00000560467 ANKARQ7Z5J8 1434 aa16.93■□□□□ 0.3
LDLR-212ENST00000560467 DLC1Q96QB1 1528 aa16.92■□□□□ 0.3
LDLR-212ENST00000560467 ONECUT3O60422 494 aaPredicted RBP16.92■□□□□ 0.3
LDLR-212ENST00000560467 SF3B2Q13435 895 aaKnown RBP16.92■□□□□ 0.3
LDLR-212ENST00000560467 KRT27Q7Z3Y8 459 aa16.92■□□□□ 0.3
LDLR-212ENST00000560467 PLCH1Q4KWH8 1693 aa16.91■□□□□ 0.3
LDLR-212ENST00000560467 A0A0G2JS52 829 aa16.91■□□□□ 0.3
LDLR-212ENST00000560467 MYT1Q01538 1121 aa16.91■□□□□ 0.3
LDLR-212ENST00000560467 PRR36Q9H6K5 1346 aa16.91■□□□□ 0.3
LDLR-212ENST00000560467 ABCA3Q99758 1704 aa16.9■□□□□ 0.3
LDLR-212ENST00000560467 ADGRB1O14514 1584 aa16.9■□□□□ 0.3
LDLR-212ENST00000560467 TRAK1Q9UPV9 953 aa16.9■□□□□ 0.3
LDLR-212ENST00000560467 MINK1Q8N4C8 1332 aaPredicted RBP16.9■□□□□ 0.3
LDLR-212ENST00000560467 RGPD8O14715 1765 aaPredicted RBP16.89■□□□□ 0.3
LDLR-212ENST00000560467 BRWD3Q6RI45 1802 aa16.89■□□□□ 0.29
LDLR-212ENST00000560467 NEUROD1Q13562 356 aa16.89■□□□□ 0.29
LDLR-212ENST00000560467 FAM98CQ17RN3 349 aaKnown RBP16.89■□□□□ 0.29
LDLR-212ENST00000560467 ADGRB2O60241 1585 aa16.89■□□□□ 0.29
LDLR-212ENST00000560467 BTG4Q9NY30 223 aa16.88■□□□□ 0.29
LDLR-212ENST00000560467 TIMELESSQ9UNS1 1208 aa16.88■□□□□ 0.29
LDLR-212ENST00000560467 NWD2Q9ULI1 1742 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms