RNA–Protein interactions for RNA: ENST00000560070.5

USP3-217, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-217ENST00000560070 PRAG1Q86YV5 1406 aa12.2□□□□□ -0.46
USP3-217ENST00000560070 PPLO60437 1756 aa12.2□□□□□ -0.46
USP3-217ENST00000560070 PTCH1Q13635 1447 aa12.2□□□□□ -0.46
USP3-217ENST00000560070 CARD11Q9BXL7 1154 aa12.19□□□□□ -0.46
USP3-217ENST00000560070 ASXL1Q8IXJ9 1541 aa12.19□□□□□ -0.46
USP3-217ENST00000560070 ADGRL3Q9HAR2 1447 aa12.19□□□□□ -0.46
USP3-217ENST00000560070 XPCQ01831 940 aaPredicted RBP12.18□□□□□ -0.46
USP3-217ENST00000560070 CHD2O14647 1828 aaKnown RBP12.18□□□□□ -0.46
USP3-217ENST00000560070 ROCK2O75116 1388 aaKnown RBP12.18□□□□□ -0.46
USP3-217ENST00000560070 FOXO3O43524 673 aa12.17□□□□□ -0.46
USP3-217ENST00000560070 PMFBP1Q8TBY8 1022 aa12.17□□□□□ -0.46
USP3-217ENST00000560070 WASLO00401 505 aaPredicted RBP12.16□□□□□ -0.46
USP3-217ENST00000560070 PLEKHG5O94827 1062 aa12.16□□□□□ -0.46
USP3-217ENST00000560070 CDK19Q9BWU1 502 aa12.16□□□□□ -0.46
USP3-217ENST00000560070 TECPR2O15040 1411 aa12.16□□□□□ -0.46
USP3-217ENST00000560070 MST1RQ04912 1400 aa12.16□□□□□ -0.46
USP3-217ENST00000560070 C1orf167Q5SNV9 1468 aa12.15□□□□□ -0.46
USP3-217ENST00000560070 NUTM2BA6NNL0 878 aaPredicted RBP12.15□□□□□ -0.46
USP3-217ENST00000560070 NUTM2EB1AL46 878 aaPredicted RBP12.15□□□□□ -0.46
USP3-217ENST00000560070 NUTM2AQ8IVF1 878 aaPredicted RBP12.15□□□□□ -0.46
USP3-217ENST00000560070 XRN1Q8IZH2 1706 aaKnown RBP12.14□□□□□ -0.47
USP3-217ENST00000560070 CENPJQ9HC77 1338 aaPredicted RBP12.14□□□□□ -0.47
USP3-217ENST00000560070 ADGRB1O14514 1584 aa12.13□□□□□ -0.47
USP3-217ENST00000560070 CLSPNQ9HAW4 1339 aa12.13□□□□□ -0.47
USP3-217ENST00000560070 DCCP43146 1447 aa12.13□□□□□ -0.47
USP3-217ENST00000560070 DCAF8L1A6NGE4 600 aa12.13□□□□□ -0.47
USP3-217ENST00000560070 SRPK2P78362 688 aaKnown RBP12.13□□□□□ -0.47
USP3-217ENST00000560070 CABP2Q9NPB3 220 aa12.13□□□□□ -0.47
USP3-217ENST00000560070 PHF8Q9UPP1 1060 aa12.13□□□□□ -0.47
USP3-217ENST00000560070 IFT172Q9UG01 1749 aa12.12□□□□□ -0.47
USP3-217ENST00000560070 PSME1Q06323 249 aa12.12□□□□□ -0.47
USP3-217ENST00000560070 KRT28Q7Z3Y7 464 aa12.12□□□□□ -0.47
USP3-217ENST00000560070 LRRC59Q96AG4 307 aaKnown RBP12.12□□□□□ -0.47
USP3-217ENST00000560070 NUDT16Q96DE0 195 aaKnown RBP12.12□□□□□ -0.47
USP3-217ENST00000560070 TIMELESSQ9UNS1 1208 aa12.12□□□□□ -0.47
USP3-217ENST00000560070 LMOD2Q6P5Q4 547 aa12.11□□□□□ -0.47
USP3-217ENST00000560070 PRR36Q9H6K5 1346 aa12.11□□□□□ -0.47
USP3-217ENST00000560070 DISP3Q9P2K9 1392 aa12.1□□□□□ -0.47
USP3-217ENST00000560070 XIRP1Q702N8 1843 aaKnown RBP12.1□□□□□ -0.47
USP3-217ENST00000560070 NGDNQ8NEJ9 315 aaKnown RBP12.1□□□□□ -0.47
USP3-217ENST00000560070 SETD1AO15047 1707 aaKnown RBP12.1□□□□□ -0.47
USP3-217ENST00000560070 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.1□□□□□ -0.47
USP3-217ENST00000560070 ST20-MTHFSA0A0A6YYL1 179 aa12.09□□□□□ -0.47
USP3-217ENST00000560070 DLC1Q96QB1 1528 aa12.08□□□□□ -0.48
USP3-217ENST00000560070 PAK3O75914 559 aaPredicted RBP12.08□□□□□ -0.48
USP3-217ENST00000560070 MEX3CQ5U5Q3 659 aaKnown RBP12.08□□□□□ -0.48
USP3-217ENST00000560070 NPHP3Q7Z494 1330 aa12.08□□□□□ -0.48
USP3-217ENST00000560070 JCADQ9P266 1359 aa12.07□□□□□ -0.48
USP3-217ENST00000560070 CABP1Q9NZU7 370 aa12.07□□□□□ -0.48
USP3-217ENST00000560070 SOS2Q07890 1332 aaPredicted RBP12.07□□□□□ -0.48
USP3-217ENST00000560070 EVC2Q86UK5 1308 aa12.07□□□□□ -0.48
USP3-217ENST00000560070 ADAMTS2O95450 1211 aa12.06□□□□□ -0.48
USP3-217ENST00000560070 CCDC61Q9Y6R9 512 aa12.06□□□□□ -0.48
USP3-217ENST00000560070 ROBO1Q9Y6N7 1651 aa12.06□□□□□ -0.48
USP3-217ENST00000560070 EIF3AQ14152 1382 aaKnown RBP12.05□□□□□ -0.48
USP3-217ENST00000560070 GPRASP1Q5JY77 1395 aa12.05□□□□□ -0.48
USP3-217ENST00000560070 LAMC1P11047 1609 aa12.04□□□□□ -0.48
USP3-217ENST00000560070 NUTM2GQ5VZR2 741 aa12.04□□□□□ -0.48
USP3-217ENST00000560070 TMC1Q8TDI8 760 aa12.04□□□□□ -0.48
USP3-217ENST00000560070 CABLES1Q8TDN4 633 aa12.04□□□□□ -0.48
USP3-217ENST00000560070 ACEP12821 1306 aa12.04□□□□□ -0.48
USP3-217ENST00000560070 NALCNQ8IZF0 1738 aa12.03□□□□□ -0.48
USP3-217ENST00000560070 HAP1P54257 671 aaPredicted RBP12.03□□□□□ -0.48
USP3-217ENST00000560070 PLEKHG3A1L390 1219 aa12.02□□□□□ -0.49
USP3-217ENST00000560070 SPATA31A3Q5VYP0 1347 aa12.02□□□□□ -0.49
USP3-217ENST00000560070 ANKARQ7Z5J8 1434 aa12.02□□□□□ -0.49
USP3-217ENST00000560070 RALGAPBQ86X10 1494 aa12.02□□□□□ -0.49
USP3-217ENST00000560070 CDC42BPGQ6DT37 1551 aa12.01□□□□□ -0.49
USP3-217ENST00000560070 C8orf37Q96NL8 207 aa12.01□□□□□ -0.49
USP3-217ENST00000560070 POLR3GLQ9BT43 218 aa12.01□□□□□ -0.49
USP3-217ENST00000560070 SPATA31A6Q5VVP1 1343 aa12.01□□□□□ -0.49
USP3-217ENST00000560070 PNPLA6Q8IY17 1366 aa12.01□□□□□ -0.49
USP3-217ENST00000560070 HSPA5P11021 654 aaKnown RBP12□□□□□ -0.49
USP3-217ENST00000560070 NGLY1Q96IV0 654 aa12□□□□□ -0.49
USP3-217ENST00000560070 TESK2Q96S53 571 aa12□□□□□ -0.49
USP3-217ENST00000560070 SLC12A5Q9H2X9 1139 aa12□□□□□ -0.49
USP3-217ENST00000560070 C1QBPQ07021 282 aaKnown RBP11.99□□□□□ -0.49
USP3-217ENST00000560070 ILDR2Q71H61 639 aa11.99□□□□□ -0.49
USP3-217ENST00000560070 RGS17Q9UGC6 210 aaPredicted RBP11.99□□□□□ -0.49
USP3-217ENST00000560070 USP47Q96K76 1375 aa11.99□□□□□ -0.49
USP3-217ENST00000560070 KNDC1Q76NI1 1749 aa11.98□□□□□ -0.49
USP3-217ENST00000560070 TRPM1Q7Z4N2 1603 aa11.98□□□□□ -0.49
USP3-217ENST00000560070 PPIP5K1Q6PFW1 1433 aa11.98□□□□□ -0.49
USP3-217ENST00000560070 EIF4G2P78344 907 aaKnown RBP eCLIP11.98□□□□□ -0.49
USP3-217ENST00000560070 TMF1P82094 1093 aa11.98□□□□□ -0.49
USP3-217ENST00000560070 PHLPP1O60346 1717 aa11.97□□□□□ -0.49
USP3-217ENST00000560070 AHDC1Q5TGY3 1603 aaPredicted RBP11.97□□□□□ -0.49
USP3-217ENST00000560070 TULP4Q9NRJ4 1543 aa11.97□□□□□ -0.49
USP3-217ENST00000560070 POTEAQ6S8J7 498 aa11.97□□□□□ -0.49
USP3-217ENST00000560070 ABTB2Q8N961 1025 aa11.97□□□□□ -0.49
USP3-217ENST00000560070 ZBTB7CA1YPR0 619 aa11.96□□□□□ -0.49
USP3-217ENST00000560070 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.96□□□□□ -0.499e-8■■■■□ 26.3
USP3-217ENST00000560070 KIAA1210Q9ULL0 1709 aa11.96□□□□□ -0.49
USP3-217ENST00000560070 PXDNQ92626 1479 aa11.95□□□□□ -0.5
USP3-217ENST00000560070 SBNO1A3KN83 1393 aa11.95□□□□□ -0.5
USP3-217ENST00000560070 AFF2P51816 1311 aa11.95□□□□□ -0.5
USP3-217ENST00000560070 SLC24A1O60721 1099 aa11.95□□□□□ -0.5
USP3-217ENST00000560070 ZC3H6P61129 1189 aaKnown RBP11.95□□□□□ -0.5
USP3-217ENST00000560070 ZNF692Q9BU19 519 aaPredicted RBP11.95□□□□□ -0.5
USP3-217ENST00000560070 COL16A1Q07092 1604 aaPredicted RBP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms