RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 PLEKHH1Q9ULM0 1364 aa16.91■□□□□ 0.3
HERC1-205ENST00000559886 PTCH1Q13635 1447 aa16.9■□□□□ 0.3
HERC1-205ENST00000559886 TULP4Q9NRJ4 1543 aa16.9■□□□□ 0.3
HERC1-205ENST00000559886 EVC2Q86UK5 1308 aa16.89■□□□□ 0.29
HERC1-205ENST00000559886 MINK1Q8N4C8 1332 aaPredicted RBP16.88■□□□□ 0.29
HERC1-205ENST00000559886 PUS7Q96PZ0 661 aaKnown RBP16.87■□□□□ 0.29
HERC1-205ENST00000559886 MYOM1P52179 1685 aa16.87■□□□□ 0.29
HERC1-205ENST00000559886 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.86■□□□□ 0.29
HERC1-205ENST00000559886 KCNA6P17658 529 aa16.86■□□□□ 0.29
HERC1-205ENST00000559886 NWD1Q149M9 1564 aa16.86■□□□□ 0.29
HERC1-205ENST00000559886 ADGRB2O60241 1585 aa16.84■□□□□ 0.29
HERC1-205ENST00000559886 CDK19Q9BWU1 502 aa16.81■□□□□ 0.28
HERC1-205ENST00000559886 CABP2Q9NPB3 220 aa16.81■□□□□ 0.28
HERC1-205ENST00000559886 WASLO00401 505 aaPredicted RBP16.8■□□□□ 0.28
HERC1-205ENST00000559886 SRPK2P78362 688 aaKnown RBP16.8■□□□□ 0.28
HERC1-205ENST00000559886 STRCP1A6NGW2 1772 aa16.8■□□□□ 0.28
HERC1-205ENST00000559886 NKTRP30414 1462 aaKnown RBP16.79■□□□□ 0.28
HERC1-205ENST00000559886 ATAD2Q6PL18 1390 aa16.79■□□□□ 0.28
HERC1-205ENST00000559886 PANK3Q9H999 370 aa16.78■□□□□ 0.28
HERC1-205ENST00000559886 MIER1Q8N108 512 aa16.78■□□□□ 0.28
HERC1-205ENST00000559886 NALCNQ8IZF0 1738 aa16.77■□□□□ 0.28
HERC1-205ENST00000559886 NINLQ9Y2I6 1382 aa16.77■□□□□ 0.28
HERC1-205ENST00000559886 PER1O15534 1290 aaPredicted RBP16.76■□□□□ 0.27
HERC1-205ENST00000559886 SLC12A5Q9H2X9 1139 aa16.76■□□□□ 0.27
HERC1-205ENST00000559886 DMRT2Q9Y5R5 561 aa16.75■□□□□ 0.27
HERC1-205ENST00000559886 TMC1Q8TDI8 760 aa16.75■□□□□ 0.27
HERC1-205ENST00000559886 ANP32CO43423 234 aa16.74■□□□□ 0.27
HERC1-205ENST00000559886 ADGRL3Q9HAR2 1447 aa16.74■□□□□ 0.27
HERC1-205ENST00000559886 CDC42BPGQ6DT37 1551 aa16.73■□□□□ 0.27
HERC1-205ENST00000559886 ATP7BP35670 1465 aa16.73■□□□□ 0.27
HERC1-205ENST00000559886 PROSER2Q86WR7 435 aaPredicted RBP16.73■□□□□ 0.27
HERC1-205ENST00000559886 NUDT16Q96DE0 195 aaKnown RBP16.73■□□□□ 0.27
HERC1-205ENST00000559886 FMN2Q9NZ56 1722 aa16.73■□□□□ 0.27
HERC1-205ENST00000559886 USP32Q8NFA0 1604 aa16.72■□□□□ 0.27
HERC1-205ENST00000559886 TOPAZ1Q8N9V7 1692 aa16.72■□□□□ 0.27
HERC1-205ENST00000559886 ANKRD36BQ8N2N9 1353 aa16.71■□□□□ 0.27
HERC1-205ENST00000559886 RBM33Q96EV2 1170 aaKnown RBP16.71■□□□□ 0.27
HERC1-205ENST00000559886 PRR36Q9H6K5 1346 aa16.71■□□□□ 0.27
HERC1-205ENST00000559886 RGPD8O14715 1765 aaPredicted RBP16.71■□□□□ 0.27
HERC1-205ENST00000559886 CCDC61Q9Y6R9 512 aa16.71■□□□□ 0.26
HERC1-205ENST00000559886 CARD14Q9BXL6 1004 aa16.7■□□□□ 0.26
HERC1-205ENST00000559886 CABP1Q9NZU7 370 aa16.7■□□□□ 0.26
HERC1-205ENST00000559886 ITSN1Q15811 1721 aa16.7■□□□□ 0.26
HERC1-205ENST00000559886 NCOA3Q9Y6Q9 1424 aa16.7■□□□□ 0.26
HERC1-205ENST00000559886 CD163L1Q9NR16 1453 aa16.7■□□□□ 0.26
HERC1-205ENST00000559886 PPIP5K1Q6PFW1 1433 aa16.69■□□□□ 0.26
HERC1-205ENST00000559886 PRKRIP1Q9H875 184 aaPredicted RBP16.69■□□□□ 0.26
HERC1-205ENST00000559886 KNSTRNQ9Y448 316 aa16.69■□□□□ 0.26
HERC1-205ENST00000559886 XIRP1Q702N8 1843 aaKnown RBP16.69■□□□□ 0.26
HERC1-205ENST00000559886 ANKARQ7Z5J8 1434 aa16.68■□□□□ 0.26
HERC1-205ENST00000559886 ZNF335Q9H4Z2 1342 aaPredicted RBP16.68■□□□□ 0.26
HERC1-205ENST00000559886 TERF2IPQ9NYB0 399 aa16.68■□□□□ 0.26
HERC1-205ENST00000559886 A0A1W2PP64 1363 aa16.68■□□□□ 0.26
HERC1-205ENST00000559886 TMEM94Q12767 1356 aa16.68■□□□□ 0.26
HERC1-205ENST00000559886 C14orf37Q86TY3 774 aa16.67■□□□□ 0.26
HERC1-205ENST00000559886 AKAP12Q02952 1782 aa16.67■□□□□ 0.26
HERC1-205ENST00000559886 AMER1Q5JTC6 1135 aaPredicted RBP16.67■□□□□ 0.26
HERC1-205ENST00000559886 NPC1L1Q9UHC9 1359 aa16.66■□□□□ 0.26
HERC1-205ENST00000559886 NUTM2FA1L443 756 aa16.66■□□□□ 0.26
HERC1-205ENST00000559886 NSD3Q9BZ95 1437 aa16.66■□□□□ 0.26
HERC1-205ENST00000559886 C19orf44Q9H6X5 657 aa16.65■□□□□ 0.26
HERC1-205ENST00000559886 CPSF1Q10570 1443 aaKnown RBP16.65■□□□□ 0.26
HERC1-205ENST00000559886 KTN1Q86UP2 1357 aaKnown RBP16.65■□□□□ 0.26
HERC1-205ENST00000559886 LRRC7Q96NW7 1537 aa16.65■□□□□ 0.26
HERC1-205ENST00000559886 HDGFL2Q7Z4V5 671 aaPredicted RBP16.65■□□□□ 0.26
HERC1-205ENST00000559886 PLEKHG3A1L390 1219 aa16.64■□□□□ 0.26
HERC1-205ENST00000559886 MON2Q7Z3U7 1717 aa16.64■□□□□ 0.25
HERC1-205ENST00000559886 DCCP43146 1447 aa16.63■□□□□ 0.25
HERC1-205ENST00000559886 AEBP2Q6ZN18 517 aaPredicted RBP16.63■□□□□ 0.25
HERC1-205ENST00000559886 PARD3Q8TEW0 1356 aa16.63■□□□□ 0.25
HERC1-205ENST00000559886 CCER2I3L3R5 266 aa16.62■□□□□ 0.25
HERC1-205ENST00000559886 RALBP1Q15311 655 aa16.62■□□□□ 0.25
HERC1-205ENST00000559886 CC2D1BQ5T0F9 858 aaKnown RBP16.62■□□□□ 0.25
HERC1-205ENST00000559886 CNGB1Q14028 1251 aaPredicted RBP16.62■□□□□ 0.25
HERC1-205ENST00000559886 ZNF692Q9BU19 519 aaPredicted RBP16.61■□□□□ 0.25
HERC1-205ENST00000559886 CGNL1Q0VF96 1302 aa16.61■□□□□ 0.25
HERC1-205ENST00000559886 ACEP12821 1306 aa16.6■□□□□ 0.25
HERC1-205ENST00000559886 POLR3AO14802 1390 aaPredicted RBP16.59■□□□□ 0.25
HERC1-205ENST00000559886 MSH6P52701 1360 aa16.59■□□□□ 0.25
HERC1-205ENST00000559886 EDC4Q6P2E9 1401 aaKnown RBP16.59■□□□□ 0.25
HERC1-205ENST00000559886 KIF20BQ96Q89 1820 aa16.59■□□□□ 0.25
HERC1-205ENST00000559886 ATF3P18847 181 aa16.58■□□□□ 0.25
HERC1-205ENST00000559886 NSD2O96028 1365 aa16.58■□□□□ 0.24
HERC1-205ENST00000559886 PMFBP1Q8TBY8 1022 aa16.58■□□□□ 0.24
HERC1-205ENST00000559886 NRKQ7Z2Y5 1582 aa16.58■□□□□ 0.24
HERC1-205ENST00000559886 ANKRD26Q9UPS8 1709 aa16.57■□□□□ 0.24
HERC1-205ENST00000559886 CADPS2Q86UW7 1296 aa16.57■□□□□ 0.24
HERC1-205ENST00000559886 MYBBP1AQ9BQG0 1328 aaKnown RBP16.57■□□□□ 0.24
HERC1-205ENST00000559886 MST1RQ04912 1400 aa16.57■□□□□ 0.24
HERC1-205ENST00000559886 C1orf167Q5SNV9 1468 aa16.57■□□□□ 0.24
HERC1-205ENST00000559886 LTBP4Q8N2S1 1624 aa16.56■□□□□ 0.24
HERC1-205ENST00000559886 USP6P35125 1406 aa16.56■□□□□ 0.24
HERC1-205ENST00000559886 NGDNQ8NEJ9 315 aaKnown RBP16.56■□□□□ 0.24
HERC1-205ENST00000559886 PHF8Q9UPP1 1060 aa16.56■□□□□ 0.24
HERC1-205ENST00000559886 FYB1O15117 783 aa16.55■□□□□ 0.24
HERC1-205ENST00000559886 ESCO1Q5FWF5 840 aa16.55■□□□□ 0.24
HERC1-205ENST00000559886 SSH2Q76I76 1423 aa16.54■□□□□ 0.24
HERC1-205ENST00000559886 KIF1AQ12756 1690 aa16.54■□□□□ 0.24
HERC1-205ENST00000559886 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.53■□□□□ 0.24
HERC1-205ENST00000559886 ORAI2Q96SN7 254 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 121.1 ms