RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 TRPC5Q9UL62 973 aaPredicted RBP13.67□□□□□ -0.22
HDDC3-204ENST00000559834 CCDC144AA2RUR9 1427 aa13.66□□□□□ -0.22
HDDC3-204ENST00000559834 STK26Q9P289 416 aa13.66□□□□□ -0.22
HDDC3-204ENST00000559834 NALCNQ8IZF0 1738 aa13.66□□□□□ -0.22
HDDC3-204ENST00000559834 ANKRD30BQ9BXX2 1392 aa13.66□□□□□ -0.22
HDDC3-204ENST00000559834 ADGRF5Q8IZF2 1346 aa13.65□□□□□ -0.22
HDDC3-204ENST00000559834 FOXO3O43524 673 aa13.65□□□□□ -0.22
HDDC3-204ENST00000559834 FNBP4Q8N3X1 1017 aaPredicted RBP13.65□□□□□ -0.22
HDDC3-204ENST00000559834 LRPPRCP42704 1394 aaKnown RBP13.65□□□□□ -0.22
HDDC3-204ENST00000559834 WAPLQ7Z5K2 1190 aa13.64□□□□□ -0.23
HDDC3-204ENST00000559834 ABCC11Q96J66 1382 aa13.62□□□□□ -0.23
HDDC3-204ENST00000559834 TMEM132EQ6IEE7 984 aa13.62□□□□□ -0.23
HDDC3-204ENST00000559834 LAMC1P11047 1609 aa13.61□□□□□ -0.23
HDDC3-204ENST00000559834 PPLO60437 1756 aa13.61□□□□□ -0.23
HDDC3-204ENST00000559834 NUTM2FA1L443 756 aa13.61□□□□□ -0.23
HDDC3-204ENST00000559834 SIRT1Q96EB6 747 aa13.61□□□□□ -0.23
HDDC3-204ENST00000559834 RGS12O14924 1447 aa13.6□□□□□ -0.23
HDDC3-204ENST00000559834 XPCQ01831 940 aaPredicted RBP13.6□□□□□ -0.23
HDDC3-204ENST00000559834 ATAD2Q6PL18 1390 aa13.59□□□□□ -0.23
HDDC3-204ENST00000559834 TECPR2O15040 1411 aa13.59□□□□□ -0.23
HDDC3-204ENST00000559834 SPATA31E1Q6ZUB1 1445 aa13.59□□□□□ -0.23
HDDC3-204ENST00000559834 PSME1Q06323 249 aa13.58□□□□□ -0.24
HDDC3-204ENST00000559834 C14orf93Q9H972 538 aaKnown RBP13.58□□□□□ -0.24
HDDC3-204ENST00000559834 CDC42BPGQ6DT37 1551 aa13.58□□□□□ -0.24
HDDC3-204ENST00000559834 KRT28Q7Z3Y7 464 aa13.57□□□□□ -0.24
HDDC3-204ENST00000559834 CCDC125Q86Z20 511 aa13.57□□□□□ -0.24
HDDC3-204ENST00000559834 DHX57Q6P158 1386 aaKnown RBP13.57□□□□□ -0.24
HDDC3-204ENST00000559834 GJD4Q96KN9 370 aaPredicted RBP13.56□□□□□ -0.24
HDDC3-204ENST00000559834 PIK3C2GO75747 1445 aa13.56□□□□□ -0.24
HDDC3-204ENST00000559834 ATRNO75882 1429 aa13.56□□□□□ -0.24
HDDC3-204ENST00000559834 YTHDC2Q9H6S0 1430 aaKnown RBP13.56□□□□□ -0.24
HDDC3-204ENST00000559834 MYOM2P54296 1465 aa13.55□□□□□ -0.24
HDDC3-204ENST00000559834 PXDNQ92626 1479 aa13.55□□□□□ -0.24
HDDC3-204ENST00000559834 HAP1P54257 671 aaPredicted RBP13.55□□□□□ -0.24
HDDC3-204ENST00000559834 SPATA31A3Q5VYP0 1347 aa13.55□□□□□ -0.24
HDDC3-204ENST00000559834 PLEKHH1Q9ULM0 1364 aa13.55□□□□□ -0.24
HDDC3-204ENST00000559834 COL22A1Q8NFW1 1626 aaPredicted RBP13.54□□□□□ -0.24
HDDC3-204ENST00000559834 CFAP70Q5T0N1 1121 aa13.54□□□□□ -0.24
HDDC3-204ENST00000559834 UNC5CLQ8IV45 518 aa13.54□□□□□ -0.24
HDDC3-204ENST00000559834 PHF8Q9UPP1 1060 aa13.54□□□□□ -0.24
HDDC3-204ENST00000559834 POGKQ9P215 609 aa13.53□□□□□ -0.24
HDDC3-204ENST00000559834 BCL9LQ86UU0 1499 aa13.53□□□□□ -0.24
HDDC3-204ENST00000559834 ZRANB1Q9UGI0 708 aa13.52□□□□□ -0.25
HDDC3-204ENST00000559834 PRAM1Q96QH2 718 aa13.51□□□□□ -0.25
HDDC3-204ENST00000559834 SAFB2Q14151 953 aaKnown RBP eCLIP13.5□□□□□ -0.25
HDDC3-204ENST00000559834 LMOD2Q6P5Q4 547 aa13.5□□□□□ -0.25
HDDC3-204ENST00000559834 STAC3Q96MF2 364 aa13.49□□□□□ -0.25
HDDC3-204ENST00000559834 KNDC1Q76NI1 1749 aa13.48□□□□□ -0.25
HDDC3-204ENST00000559834 IFT172Q9UG01 1749 aa13.48□□□□□ -0.25
HDDC3-204ENST00000559834 SBNO1A3KN83 1393 aa13.47□□□□□ -0.25
HDDC3-204ENST00000559834 ARHGEF10O15013 1369 aa13.47□□□□□ -0.25
HDDC3-204ENST00000559834 PLEKHG5O94827 1062 aa13.47□□□□□ -0.25
HDDC3-204ENST00000559834 CABLES1Q8TDN4 633 aa13.47□□□□□ -0.25
HDDC3-204ENST00000559834 NRXN1Q9ULB1 1477 aa13.47□□□□□ -0.25
HDDC3-204ENST00000559834 KIF1AQ12756 1690 aa13.47□□□□□ -0.25
HDDC3-204ENST00000559834 SLIT2O94813 1529 aa13.46□□□□□ -0.25
HDDC3-204ENST00000559834 SF3B2Q13435 895 aaKnown RBP13.46□□□□□ -0.25
HDDC3-204ENST00000559834 VPS72Q15906 364 aa13.46□□□□□ -0.25
HDDC3-204ENST00000559834 PMFBP1Q8TBY8 1022 aa13.46□□□□□ -0.25
HDDC3-204ENST00000559834 TRAK1Q9UPV9 953 aa13.46□□□□□ -0.25
HDDC3-204ENST00000559834 KDM2AQ9Y2K7 1162 aa13.46□□□□□ -0.25
HDDC3-204ENST00000559834 CCDC9Q9Y3X0 531 aaKnown RBP13.46□□□□□ -0.25
HDDC3-204ENST00000559834 FMN2Q9NZ56 1722 aa13.46□□□□□ -0.25
HDDC3-204ENST00000559834 TNS3Q68CZ2 1445 aa13.46□□□□□ -0.26
HDDC3-204ENST00000559834 RALGAPBQ86X10 1494 aa13.45□□□□□ -0.26
HDDC3-204ENST00000559834 SEPT12Q8IYM1 358 aa13.45□□□□□ -0.26
HDDC3-204ENST00000559834 DCAF11Q8TEB1 546 aa13.45□□□□□ -0.26
HDDC3-204ENST00000559834 GPRASP1Q5JY77 1395 aa13.45□□□□□ -0.26
HDDC3-204ENST00000559834 RAB3GAP2Q9H2M9 1393 aa13.45□□□□□ -0.26
HDDC3-204ENST00000559834 MARF1Q9Y4F3 1742 aaKnown RBP13.44□□□□□ -0.26
HDDC3-204ENST00000559834 FAM83GA6ND36 823 aa13.44□□□□□ -0.26
HDDC3-204ENST00000559834 ONECUT3O60422 494 aaPredicted RBP13.44□□□□□ -0.26
HDDC3-204ENST00000559834 ANKARQ7Z5J8 1434 aa13.44□□□□□ -0.26
HDDC3-204ENST00000559834 EIF3AQ14152 1382 aaKnown RBP13.44□□□□□ -0.26
HDDC3-204ENST00000559834 HRCP23327 699 aa13.43□□□□□ -0.26
HDDC3-204ENST00000559834 HIRIP3Q9BW71 556 aaPredicted RBP13.43□□□□□ -0.26
HDDC3-204ENST00000559834 DLC1Q96QB1 1528 aa13.43□□□□□ -0.26
HDDC3-204ENST00000559834 MINK1Q8N4C8 1332 aaPredicted RBP13.42□□□□□ -0.26
HDDC3-204ENST00000559834 BLMP54132 1417 aaPredicted RBP13.42□□□□□ -0.26
HDDC3-204ENST00000559834 WASLO00401 505 aaPredicted RBP13.42□□□□□ -0.26
HDDC3-204ENST00000559834 KRT27Q7Z3Y8 459 aa13.41□□□□□ -0.26
HDDC3-204ENST00000559834 NGDNQ8NEJ9 315 aaKnown RBP13.41□□□□□ -0.26
HDDC3-204ENST00000559834 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.41□□□□□ -0.26
HDDC3-204ENST00000559834 USP32Q8NFA0 1604 aa13.4□□□□□ -0.26
HDDC3-204ENST00000559834 A0A0G2JS52 829 aa13.4□□□□□ -0.26
HDDC3-204ENST00000559834 MYT1Q01538 1121 aa13.4□□□□□ -0.26
HDDC3-204ENST00000559834 PAK3O75914 559 aaPredicted RBP13.39□□□□□ -0.27
HDDC3-204ENST00000559834 BTG4Q9NY30 223 aa13.39□□□□□ -0.27
HDDC3-204ENST00000559834 RGPD8O14715 1765 aaPredicted RBP13.39□□□□□ -0.27
HDDC3-204ENST00000559834 GLI3P10071 1580 aa13.38□□□□□ -0.27
HDDC3-204ENST00000559834 DEFB132Q7Z7B7 95 aa13.38□□□□□ -0.27
HDDC3-204ENST00000559834 PRR36Q9H6K5 1346 aa13.37□□□□□ -0.27
HDDC3-204ENST00000559834 ADGRB1O14514 1584 aa13.37□□□□□ -0.27
HDDC3-204ENST00000559834 FAM98CQ17RN3 349 aaKnown RBP13.36□□□□□ -0.27
HDDC3-204ENST00000559834 BAG6P46379 1132 aa13.35□□□□□ -0.27
HDDC3-204ENST00000559834 NUDT16Q96DE0 195 aaKnown RBP13.35□□□□□ -0.27
HDDC3-204ENST00000559834 PRDM11Q9NQV5 511 aa13.35□□□□□ -0.27
HDDC3-204ENST00000559834 ADGRB2O60241 1585 aa13.35□□□□□ -0.27
HDDC3-204ENST00000559834 NWD2Q9ULI1 1742 aa13.35□□□□□ -0.27
HDDC3-204ENST00000559834 TULP4Q9NRJ4 1543 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms