RNA–Protein interactions for RNA: ENST00000558700.5

TRAF3-205, Transcript of TNF receptor associated factor 3, humanhuman

TSL 3

Gene TRAF3, Length 738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-205ENST00000558700 MKRN4PQ13434 485 aaPredicted RBP12.04□□□□□ -0.48
TRAF3-205ENST00000558700 MST1RQ04912 1400 aa12.03□□□□□ -0.48
TRAF3-205ENST00000558700 ACIN1Q9UKV3 1341 aaKnown RBP12.03□□□□□ -0.48
TRAF3-205ENST00000558700 KNDC1Q76NI1 1749 aa12.02□□□□□ -0.49
TRAF3-205ENST00000558700 SPATA31A6Q5VVP1 1343 aa12.01□□□□□ -0.49
TRAF3-205ENST00000558700 SPATA31E1Q6ZUB1 1445 aa12.01□□□□□ -0.49
TRAF3-205ENST00000558700 CDC42BPGQ6DT37 1551 aa12.01□□□□□ -0.49
TRAF3-205ENST00000558700 LAMC1P11047 1609 aa12□□□□□ -0.49
TRAF3-205ENST00000558700 LRP6O75581 1613 aa12□□□□□ -0.49
TRAF3-205ENST00000558700 BRINP3Q76B58 766 aa11.99□□□□□ -0.49
TRAF3-205ENST00000558700 ANKRD30BQ9BXX2 1392 aa11.99□□□□□ -0.49
TRAF3-205ENST00000558700 SETD5Q9C0A6 1442 aa11.99□□□□□ -0.49
TRAF3-205ENST00000558700 ROBO2Q9HCK4 1378 aa11.98□□□□□ -0.49
TRAF3-205ENST00000558700 HAP1P54257 671 aaPredicted RBP11.98□□□□□ -0.49
TRAF3-205ENST00000558700 RGS17Q9UGC6 210 aaPredicted RBP11.98□□□□□ -0.49
TRAF3-205ENST00000558700 MPHOSPH9Q99550 1183 aa11.97□□□□□ -0.49
TRAF3-205ENST00000558700 MYOM2P54296 1465 aa11.96□□□□□ -0.49
TRAF3-205ENST00000558700 C1orf167Q5SNV9 1468 aa11.96□□□□□ -0.49
TRAF3-205ENST00000558700 TECPR2O15040 1411 aa11.96□□□□□ -0.49
TRAF3-205ENST00000558700 PIK3C2GO75747 1445 aa11.96□□□□□ -0.49
TRAF3-205ENST00000558700 MEX3CQ5U5Q3 659 aaKnown RBP11.95□□□□□ -0.5
TRAF3-205ENST00000558700 IFNLR1Q8IU57 520 aaPredicted RBP11.95□□□□□ -0.5
TRAF3-205ENST00000558700 RAB3GAP2Q9H2M9 1393 aa11.94□□□□□ -0.5
TRAF3-205ENST00000558700 ADGRF5Q8IZF2 1346 aa11.94□□□□□ -0.5
TRAF3-205ENST00000558700 POLA2Q14181 598 aa11.93□□□□□ -0.5
TRAF3-205ENST00000558700 POTEAQ6S8J7 498 aa11.93□□□□□ -0.5
TRAF3-205ENST00000558700 NRXN1Q9ULB1 1477 aa11.93□□□□□ -0.5
TRAF3-205ENST00000558700 LRPPRCP42704 1394 aaKnown RBP11.92□□□□□ -0.5
TRAF3-205ENST00000558700 FMN2Q9NZ56 1722 aa11.92□□□□□ -0.5
TRAF3-205ENST00000558700 KIF1AQ12756 1690 aa11.92□□□□□ -0.5
TRAF3-205ENST00000558700 RGL3Q3MIN7 710 aa11.92□□□□□ -0.5
TRAF3-205ENST00000558700 PNPLA6Q8IY17 1366 aa11.92□□□□□ -0.5
TRAF3-205ENST00000558700 COL22A1Q8NFW1 1626 aaPredicted RBP11.91□□□□□ -0.5
TRAF3-205ENST00000558700 LRRC59Q96AG4 307 aaKnown RBP11.91□□□□□ -0.5
TRAF3-205ENST00000558700 ZNF772Q68DY9 489 aaPredicted RBP11.9□□□□□ -0.5
TRAF3-205ENST00000558700 YTHDC2Q9H6S0 1430 aaKnown RBP11.9□□□□□ -0.5
TRAF3-205ENST00000558700 ABCC11Q96J66 1382 aa11.9□□□□□ -0.5
TRAF3-205ENST00000558700 ZBTB12Q9Y330 459 aaPredicted RBP11.89□□□□□ -0.51
TRAF3-205ENST00000558700 NUTM2BA6NNL0 878 aaPredicted RBP11.88□□□□□ -0.51
TRAF3-205ENST00000558700 NUTM2EB1AL46 878 aaPredicted RBP11.88□□□□□ -0.51
TRAF3-205ENST00000558700 NUTM2AQ8IVF1 878 aaPredicted RBP11.88□□□□□ -0.51
TRAF3-205ENST00000558700 CDK12Q9NYV4 1490 aaPredicted RBP11.88□□□□□ -0.51
TRAF3-205ENST00000558700 SOS2Q07890 1332 aaPredicted RBP11.87□□□□□ -0.51
TRAF3-205ENST00000558700 DLC1Q96QB1 1528 aa11.87□□□□□ -0.51
TRAF3-205ENST00000558700 DDX17Q92841 729 aaKnown RBP11.87□□□□□ -0.51
TRAF3-205ENST00000558700 STK26Q9P289 416 aa11.87□□□□□ -0.51
TRAF3-205ENST00000558700 PXDNQ92626 1479 aa11.87□□□□□ -0.51
TRAF3-205ENST00000558700 ADGRB2O60241 1585 aa11.87□□□□□ -0.51
TRAF3-205ENST00000558700 NPHP3Q7Z494 1330 aa11.86□□□□□ -0.51
TRAF3-205ENST00000558700 MARF1Q9Y4F3 1742 aaKnown RBP11.86□□□□□ -0.51
TRAF3-205ENST00000558700 CAPN15O75808 1086 aa11.86□□□□□ -0.51
TRAF3-205ENST00000558700 ORAI2Q96SN7 254 aa11.86□□□□□ -0.51
TRAF3-205ENST00000558700 SPINK5Q9NQ38 1064 aaPredicted RBP11.86□□□□□ -0.51
TRAF3-205ENST00000558700 ADGRB1O14514 1584 aa11.85□□□□□ -0.51
TRAF3-205ENST00000558700 DHX57Q6P158 1386 aaKnown RBP11.85□□□□□ -0.51
TRAF3-205ENST00000558700 PLEKHH1Q9ULM0 1364 aa11.85□□□□□ -0.51
TRAF3-205ENST00000558700 AFF2P51816 1311 aa11.85□□□□□ -0.51
TRAF3-205ENST00000558700 ESCO1Q5FWF5 840 aa11.84□□□□□ -0.51
TRAF3-205ENST00000558700 TMEM132EQ6IEE7 984 aa11.84□□□□□ -0.51
TRAF3-205ENST00000558700 C14orf93Q9H972 538 aaKnown RBP11.84□□□□□ -0.51
TRAF3-205ENST00000558700 WAPLQ7Z5K2 1190 aa11.83□□□□□ -0.52
TRAF3-205ENST00000558700 RGPD8O14715 1765 aaPredicted RBP11.82□□□□□ -0.52
TRAF3-205ENST00000558700 HRCP23327 699 aa11.82□□□□□ -0.52
TRAF3-205ENST00000558700 SIRT1Q96EB6 747 aa11.82□□□□□ -0.52
TRAF3-205ENST00000558700 C8orf37Q96NL8 207 aa11.82□□□□□ -0.52
TRAF3-205ENST00000558700 ARHGEF28Q8N1W1 1705 aaKnown RBP11.81□□□□□ -0.52
TRAF3-205ENST00000558700 ANKARQ7Z5J8 1434 aa11.81□□□□□ -0.52
TRAF3-205ENST00000558700 RXRBP28702 533 aa11.81□□□□□ -0.52
TRAF3-205ENST00000558700 CFAP70Q5T0N1 1121 aa11.81□□□□□ -0.52
TRAF3-205ENST00000558700 VSIG10Q8N0Z9 540 aa11.81□□□□□ -0.52
TRAF3-205ENST00000558700 KLHL34Q8N239 644 aa11.81□□□□□ -0.52
TRAF3-205ENST00000558700 ABCA3Q99758 1704 aa11.8□□□□□ -0.52
TRAF3-205ENST00000558700 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.8□□□□□ -0.52
TRAF3-205ENST00000558700 RGS12O14924 1447 aa11.8□□□□□ -0.52
TRAF3-205ENST00000558700 USP32Q8NFA0 1604 aa11.8□□□□□ -0.52
TRAF3-205ENST00000558700 NUTM2FA1L443 756 aa11.8□□□□□ -0.52
TRAF3-205ENST00000558700 EIF3AQ14152 1382 aaKnown RBP11.79□□□□□ -0.52
TRAF3-205ENST00000558700 ADAMTS2O95450 1211 aa11.79□□□□□ -0.52
TRAF3-205ENST00000558700 STAC3Q96MF2 364 aa11.79□□□□□ -0.52
TRAF3-205ENST00000558700 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.79□□□□□ -0.52
TRAF3-205ENST00000558700 ITSN1Q15811 1721 aa11.79□□□□□ -0.52
TRAF3-205ENST00000558700 KIAA1210Q9ULL0 1709 aa11.79□□□□□ -0.52
TRAF3-205ENST00000558700 TNS3Q68CZ2 1445 aa11.78□□□□□ -0.52
TRAF3-205ENST00000558700 TULP4Q9NRJ4 1543 aa11.78□□□□□ -0.52
TRAF3-205ENST00000558700 FOXO3O43524 673 aa11.78□□□□□ -0.52
TRAF3-205ENST00000558700 NGLY1Q96IV0 654 aa11.78□□□□□ -0.52
TRAF3-205ENST00000558700 PRAM1Q96QH2 718 aa11.78□□□□□ -0.52
TRAF3-205ENST00000558700 RBM6P78332 1123 aaKnown RBP11.77□□□□□ -0.53
TRAF3-205ENST00000558700 XPCQ01831 940 aaPredicted RBP11.77□□□□□ -0.53
TRAF3-205ENST00000558700 SPOCK2Q92563 424 aa11.77□□□□□ -0.53
TRAF3-205ENST00000558700 POGKQ9P215 609 aa11.77□□□□□ -0.53
TRAF3-205ENST00000558700 ATRNO75882 1429 aa11.77□□□□□ -0.53
TRAF3-205ENST00000558700 PLCH1Q4KWH8 1693 aa11.76□□□□□ -0.53
TRAF3-205ENST00000558700 DCAF11Q8TEB1 546 aa11.76□□□□□ -0.53
TRAF3-205ENST00000558700 TRPM3Q9HCF6 1732 aaPredicted RBP11.75□□□□□ -0.53
TRAF3-205ENST00000558700 SAFB2Q14151 953 aaKnown RBP eCLIP11.75□□□□□ -0.53
TRAF3-205ENST00000558700 QTRT2Q9H974 415 aaKnown RBP11.75□□□□□ -0.53
TRAF3-205ENST00000558700 PHF8Q9UPP1 1060 aa11.75□□□□□ -0.53
TRAF3-205ENST00000558700 SPATA31A3Q5VYP0 1347 aa11.75□□□□□ -0.53
TRAF3-205ENST00000558700 NWD2Q9ULI1 1742 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms