RNA–Protein interactions for RNA: ENST00000558324.1

HERC1-202, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 5

Gene HERC1, Length 828 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-202ENST00000558324 ORAI2Q96SN7 254 aa17.51■□□□□ 0.39
HERC1-202ENST00000558324 YTHDC2Q9H6S0 1430 aaKnown RBP17.51■□□□□ 0.39
HERC1-202ENST00000558324 KNDC1Q76NI1 1749 aa17.5■□□□□ 0.39
HERC1-202ENST00000558324 CDC42BPGQ6DT37 1551 aa17.5■□□□□ 0.39
HERC1-202ENST00000558324 CFAP70Q5T0N1 1121 aa17.5■□□□□ 0.39
HERC1-202ENST00000558324 ABCC11Q96J66 1382 aa17.5■□□□□ 0.39
HERC1-202ENST00000558324 C14orf93Q9H972 538 aaKnown RBP17.49■□□□□ 0.39
HERC1-202ENST00000558324 LAMC1P11047 1609 aa17.49■□□□□ 0.39
HERC1-202ENST00000558324 NUTM2FA1L443 756 aa17.48■□□□□ 0.39
HERC1-202ENST00000558324 HRCP23327 699 aa17.48■□□□□ 0.39
HERC1-202ENST00000558324 LRRC59Q96AG4 307 aaKnown RBP17.47■□□□□ 0.39
HERC1-202ENST00000558324 KDM2AQ9Y2K7 1162 aa17.47■□□□□ 0.39
HERC1-202ENST00000558324 DHX57Q6P158 1386 aaKnown RBP17.46■□□□□ 0.39
HERC1-202ENST00000558324 PNPLA6Q8IY17 1366 aa17.45■□□□□ 0.38
HERC1-202ENST00000558324 ESCO1Q5FWF5 840 aa17.45■□□□□ 0.38
HERC1-202ENST00000558324 DCAF11Q8TEB1 546 aa17.45■□□□□ 0.38
HERC1-202ENST00000558324 SAFB2Q14151 953 aaKnown RBP eCLIP17.44■□□□□ 0.38
HERC1-202ENST00000558324 PRAM1Q96QH2 718 aa17.42■□□□□ 0.38
HERC1-202ENST00000558324 SOS2Q07890 1332 aaPredicted RBP17.42■□□□□ 0.38
HERC1-202ENST00000558324 XPCQ01831 940 aaPredicted RBP17.41■□□□□ 0.38
HERC1-202ENST00000558324 FMN2Q9NZ56 1722 aa17.41■□□□□ 0.38
HERC1-202ENST00000558324 ADGRB1O14514 1584 aa17.4■□□□□ 0.38
HERC1-202ENST00000558324 FOXO3O43524 673 aa17.39■□□□□ 0.37
HERC1-202ENST00000558324 ZNF772Q68DY9 489 aaPredicted RBP17.39■□□□□ 0.37
HERC1-202ENST00000558324 SIRT1Q96EB6 747 aa17.39■□□□□ 0.37
HERC1-202ENST00000558324 C8orf37Q96NL8 207 aa17.39■□□□□ 0.37
HERC1-202ENST00000558324 POGKQ9P215 609 aa17.39■□□□□ 0.37
HERC1-202ENST00000558324 NPHP3Q7Z494 1330 aa17.39■□□□□ 0.37
HERC1-202ENST00000558324 ADAMTS2O95450 1211 aa17.38■□□□□ 0.37
HERC1-202ENST00000558324 TRAK1Q9UPV9 953 aa17.38■□□□□ 0.37
HERC1-202ENST00000558324 AFF2P51816 1311 aa17.38■□□□□ 0.37
HERC1-202ENST00000558324 PXDNQ92626 1479 aa17.37■□□□□ 0.37
HERC1-202ENST00000558324 DLC1Q96QB1 1528 aa17.37■□□□□ 0.37
HERC1-202ENST00000558324 KIF1AQ12756 1690 aa17.34■□□□□ 0.37
HERC1-202ENST00000558324 HIRIP3Q9BW71 556 aaPredicted RBP17.34■□□□□ 0.37
HERC1-202ENST00000558324 MINK1Q8N4C8 1332 aaPredicted RBP17.33■□□□□ 0.36
HERC1-202ENST00000558324 STAC3Q96MF2 364 aa17.33■□□□□ 0.36
HERC1-202ENST00000558324 COL22A1Q8NFW1 1626 aaPredicted RBP17.32■□□□□ 0.36
HERC1-202ENST00000558324 NGLY1Q96IV0 654 aa17.32■□□□□ 0.36
HERC1-202ENST00000558324 PHF8Q9UPP1 1060 aa17.32■□□□□ 0.36
HERC1-202ENST00000558324 ADGRB2O60241 1585 aa17.32■□□□□ 0.36
HERC1-202ENST00000558324 RGPD8O14715 1765 aaPredicted RBP17.31■□□□□ 0.36
HERC1-202ENST00000558324 RXRBP28702 533 aa17.3■□□□□ 0.36
HERC1-202ENST00000558324 USP32Q8NFA0 1604 aa17.29■□□□□ 0.36
HERC1-202ENST00000558324 KRT28Q7Z3Y7 464 aa17.29■□□□□ 0.36
HERC1-202ENST00000558324 ARHGEF28Q8N1W1 1705 aaKnown RBP17.28■□□□□ 0.36
HERC1-202ENST00000558324 PLEKHG5O94827 1062 aa17.28■□□□□ 0.36
HERC1-202ENST00000558324 PMFBP1Q8TBY8 1022 aa17.28■□□□□ 0.36
HERC1-202ENST00000558324 ANKARQ7Z5J8 1434 aa17.28■□□□□ 0.36
HERC1-202ENST00000558324 SPATA31A3Q5VYP0 1347 aa17.27■□□□□ 0.36
HERC1-202ENST00000558324 QTRT2Q9H974 415 aaKnown RBP17.27■□□□□ 0.36
HERC1-202ENST00000558324 USP21Q9UK80 565 aa17.26■□□□□ 0.35
HERC1-202ENST00000558324 TULP4Q9NRJ4 1543 aa17.26■□□□□ 0.35
HERC1-202ENST00000558324 TNS3Q68CZ2 1445 aa17.25■□□□□ 0.35
HERC1-202ENST00000558324 PSME1Q06323 249 aa17.25■□□□□ 0.35
HERC1-202ENST00000558324 LMOD2Q6P5Q4 547 aa17.25■□□□□ 0.35
HERC1-202ENST00000558324 EIF3AQ14152 1382 aaKnown RBP17.25■□□□□ 0.35
HERC1-202ENST00000558324 PRR36Q9H6K5 1346 aa17.24■□□□□ 0.35
HERC1-202ENST00000558324 WASLO00401 505 aaPredicted RBP17.24■□□□□ 0.35
HERC1-202ENST00000558324 NBPF1Q3BBV0 1214 aa17.24■□□□□ 0.35
HERC1-202ENST00000558324 SIN3AQ96ST3 1273 aa17.24■□□□□ 0.35
HERC1-202ENST00000558324 KIAA1210Q9ULL0 1709 aa17.24■□□□□ 0.35
HERC1-202ENST00000558324 NEUROD1Q13562 356 aa17.23■□□□□ 0.35
HERC1-202ENST00000558324 CDK12Q9NYV4 1490 aaPredicted RBP17.23■□□□□ 0.35
HERC1-202ENST00000558324 RGS12O14924 1447 aa17.22■□□□□ 0.35
HERC1-202ENST00000558324 HAP1P54257 671 aaPredicted RBP17.22■□□□□ 0.35
HERC1-202ENST00000558324 RBM6P78332 1123 aaKnown RBP17.22■□□□□ 0.35
HERC1-202ENST00000558324 L3MBTL2Q969R5 705 aa17.22■□□□□ 0.35
HERC1-202ENST00000558324 SBNO1A3KN83 1393 aa17.21■□□□□ 0.35
HERC1-202ENST00000558324 FNBP4Q8N3X1 1017 aaPredicted RBP17.21■□□□□ 0.35
HERC1-202ENST00000558324 CABLES1Q8TDN4 633 aa17.21■□□□□ 0.35
HERC1-202ENST00000558324 MARF1Q9Y4F3 1742 aaKnown RBP17.21■□□□□ 0.35
HERC1-202ENST00000558324 TRPC5Q9UL62 973 aaPredicted RBP17.2■□□□□ 0.34
HERC1-202ENST00000558324 ATP7BP35670 1465 aa17.19■□□□□ 0.34
HERC1-202ENST00000558324 GPRASP1Q5JY77 1395 aa17.19■□□□□ 0.34
HERC1-202ENST00000558324 ARHGEF10O15013 1369 aa17.18■□□□□ 0.34
HERC1-202ENST00000558324 NGDNQ8NEJ9 315 aaKnown RBP17.18■□□□□ 0.34
HERC1-202ENST00000558324 BCL9LQ86UU0 1499 aa17.18■□□□□ 0.34
HERC1-202ENST00000558324 ATRNO75882 1429 aa17.17■□□□□ 0.34
HERC1-202ENST00000558324 NUDT16Q96DE0 195 aaKnown RBP17.17■□□□□ 0.34
HERC1-202ENST00000558324 CDK19Q9BWU1 502 aa17.17■□□□□ 0.34
HERC1-202ENST00000558324 TRPM3Q9HCF6 1732 aaPredicted RBP17.17■□□□□ 0.34
HERC1-202ENST00000558324 ABCA3Q99758 1704 aa17.16■□□□□ 0.34
HERC1-202ENST00000558324 ITSN1Q15811 1721 aa17.16■□□□□ 0.34
HERC1-202ENST00000558324 PAK3O75914 559 aaPredicted RBP17.15■□□□□ 0.34
HERC1-202ENST00000558324 UPF1Q92900 1129 aaKnown RBP eCLIP17.15■□□□□ 0.34
HERC1-202ENST00000558324 CENPJQ9HC77 1338 aaPredicted RBP17.14■□□□□ 0.33
HERC1-202ENST00000558324 SLIT2O94813 1529 aa17.13■□□□□ 0.33
HERC1-202ENST00000558324 TRPM1Q7Z4N2 1603 aa17.13■□□□□ 0.33
HERC1-202ENST00000558324 ALS2Q96Q42 1657 aa17.13■□□□□ 0.33
HERC1-202ENST00000558324 SRPK2P78362 688 aaKnown RBP17.12■□□□□ 0.33
HERC1-202ENST00000558324 UNC5CLQ8IV45 518 aa17.12■□□□□ 0.33
HERC1-202ENST00000558324 TOPAZ1Q8N9V7 1692 aa17.12■□□□□ 0.33
HERC1-202ENST00000558324 QRICH2Q9H0J4 1663 aa17.12■□□□□ 0.33
HERC1-202ENST00000558324 PLCH1Q4KWH8 1693 aa17.11■□□□□ 0.33
HERC1-202ENST00000558324 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.11■□□□□ 0.33
HERC1-202ENST00000558324 ROCK2O75116 1388 aaKnown RBP17.11■□□□□ 0.33
HERC1-202ENST00000558324 TRIM26Q12899 539 aaPredicted RBP17.1■□□□□ 0.33
HERC1-202ENST00000558324 GJD4Q96KN9 370 aaPredicted RBP17.1■□□□□ 0.33
HERC1-202ENST00000558324 CCDC61Q9Y6R9 512 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms