RNA–Protein interactions for RNA: ENST00000558040.5

SNX1-203, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 774 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-203ENST00000558040 PLEKHH1Q9ULM0 1364 aa23.41■■□□□ 1.34
SNX1-203ENST00000558040 EVC2Q86UK5 1308 aa23.41■■□□□ 1.34
SNX1-203ENST00000558040 KCNA6P17658 529 aa23.41■■□□□ 1.34
SNX1-203ENST00000558040 POLR3GLQ9BT43 218 aa23.41■■□□□ 1.34
SNX1-203ENST00000558040 DMRT2Q9Y5R5 561 aa23.4■■□□□ 1.34
SNX1-203ENST00000558040 MINK1Q8N4C8 1332 aaPredicted RBP23.38■■□□□ 1.33
SNX1-203ENST00000558040 DDX10Q13206 875 aaKnown RBP23.37■■□□□ 1.33
SNX1-203ENST00000558040 PUS7Q96PZ0 661 aaKnown RBP23.37■■□□□ 1.33
SNX1-203ENST00000558040 TULP4Q9NRJ4 1543 aa23.37■■□□□ 1.33
SNX1-203ENST00000558040 NKTRP30414 1462 aaKnown RBP23.36■■□□□ 1.33
SNX1-203ENST00000558040 DIEXFQ68CQ4 756 aaKnown RBP23.36■■□□□ 1.33
SNX1-203ENST00000558040 ADGRB2O60241 1585 aa23.35■■□□□ 1.33
SNX1-203ENST00000558040 SRPK2P78362 688 aaKnown RBP23.31■■□□□ 1.32
SNX1-203ENST00000558040 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.3■■□□□ 1.32
SNX1-203ENST00000558040 ATAD2Q6PL18 1390 aa23.29■■□□□ 1.32
SNX1-203ENST00000558040 WASLO00401 505 aaPredicted RBP23.29■■□□□ 1.32
SNX1-203ENST00000558040 CDK19Q9BWU1 502 aa23.29■■□□□ 1.32
SNX1-203ENST00000558040 PROSER2Q86WR7 435 aaPredicted RBP23.27■■□□□ 1.32
SNX1-203ENST00000558040 CABP2Q9NPB3 220 aa23.27■■□□□ 1.32
SNX1-203ENST00000558040 NINLQ9Y2I6 1382 aa23.27■■□□□ 1.31
SNX1-203ENST00000558040 MYOM1P52179 1685 aa23.25■■□□□ 1.31
SNX1-203ENST00000558040 ADGRL3Q9HAR2 1447 aa23.25■■□□□ 1.31
SNX1-203ENST00000558040 STRCP1A6NGW2 1772 aa23.24■■□□□ 1.31
SNX1-203ENST00000558040 NCOA3Q9Y6Q9 1424 aa23.24■■□□□ 1.31
SNX1-203ENST00000558040 CDC42BPGQ6DT37 1551 aa23.23■■□□□ 1.31
SNX1-203ENST00000558040 NALCNQ8IZF0 1738 aa23.22■■□□□ 1.31
SNX1-203ENST00000558040 C14orf37Q86TY3 774 aa23.22■■□□□ 1.31
SNX1-203ENST00000558040 TMC1Q8TDI8 760 aa23.21■■□□□ 1.31
SNX1-203ENST00000558040 ZNF335Q9H4Z2 1342 aaPredicted RBP23.2■■□□□ 1.3
SNX1-203ENST00000558040 TMEM94Q12767 1356 aa23.18■■□□□ 1.3
SNX1-203ENST00000558040 PANK3Q9H999 370 aa23.18■■□□□ 1.3
SNX1-203ENST00000558040 ANKARQ7Z5J8 1434 aa23.17■■□□□ 1.3
SNX1-203ENST00000558040 NUDT16Q96DE0 195 aaKnown RBP23.17■■□□□ 1.3
SNX1-203ENST00000558040 RBM33Q96EV2 1170 aaKnown RBP23.17■■□□□ 1.3
SNX1-203ENST00000558040 ATP7BP35670 1465 aa23.17■■□□□ 1.3
SNX1-203ENST00000558040 FMN2Q9NZ56 1722 aa23.16■■□□□ 1.3
SNX1-203ENST00000558040 CCDC61Q9Y6R9 512 aa23.16■■□□□ 1.3
SNX1-203ENST00000558040 SLC12A5Q9H2X9 1139 aa23.15■■□□□ 1.3
SNX1-203ENST00000558040 C19orf44Q9H6X5 657 aa23.15■■□□□ 1.3
SNX1-203ENST00000558040 ANKRD36BQ8N2N9 1353 aa23.14■■□□□ 1.3
SNX1-203ENST00000558040 TERF2IPQ9NYB0 399 aa23.14■■□□□ 1.29
SNX1-203ENST00000558040 DCCP43146 1447 aa23.14■■□□□ 1.29
SNX1-203ENST00000558040 PPIP5K1Q6PFW1 1433 aa23.14■■□□□ 1.29
SNX1-203ENST00000558040 LRRC7Q96NW7 1537 aa23.13■■□□□ 1.29
SNX1-203ENST00000558040 ITSN1Q15811 1721 aa23.13■■□□□ 1.29
SNX1-203ENST00000558040 TOPAZ1Q8N9V7 1692 aa23.13■■□□□ 1.29
SNX1-203ENST00000558040 PRR36Q9H6K5 1346 aa23.12■■□□□ 1.29
SNX1-203ENST00000558040 ANP32CO43423 234 aa23.12■■□□□ 1.29
SNX1-203ENST00000558040 CABP1Q9NZU7 370 aa23.12■■□□□ 1.29
SNX1-203ENST00000558040 MSH6P52701 1360 aa23.12■■□□□ 1.29
SNX1-203ENST00000558040 HDGFL2Q7Z4V5 671 aaPredicted RBP23.11■■□□□ 1.29
SNX1-203ENST00000558040 KNSTRNQ9Y448 316 aa23.11■■□□□ 1.29
SNX1-203ENST00000558040 USP32Q8NFA0 1604 aa23.11■■□□□ 1.29
SNX1-203ENST00000558040 NUTM2FA1L443 756 aa23.09■■□□□ 1.29
SNX1-203ENST00000558040 PER1O15534 1290 aaPredicted RBP23.09■■□□□ 1.29
SNX1-203ENST00000558040 ATF3P18847 181 aa23.08■■□□□ 1.29
SNX1-203ENST00000558040 A0A1W2PP64 1363 aa23.08■■□□□ 1.29
SNX1-203ENST00000558040 XIRP1Q702N8 1843 aaKnown RBP23.07■■□□□ 1.28
SNX1-203ENST00000558040 CD163L1Q9NR16 1453 aa23.06■■□□□ 1.28
SNX1-203ENST00000558040 PLEKHG3A1L390 1219 aa23.06■■□□□ 1.28
SNX1-203ENST00000558040 CADPS2Q86UW7 1296 aa23.06■■□□□ 1.28
SNX1-203ENST00000558040 NSD3Q9BZ95 1437 aa23.06■■□□□ 1.28
SNX1-203ENST00000558040 ZNF692Q9BU19 519 aaPredicted RBP23.04■■□□□ 1.28
SNX1-203ENST00000558040 CARD14Q9BXL6 1004 aa23.04■■□□□ 1.28
SNX1-203ENST00000558040 CPSF1Q10570 1443 aaKnown RBP23.04■■□□□ 1.28
SNX1-203ENST00000558040 RGPD8O14715 1765 aaPredicted RBP23.03■■□□□ 1.28
SNX1-203ENST00000558040 LTBP4Q8N2S1 1624 aa23.03■■□□□ 1.28
SNX1-203ENST00000558040 KTN1Q86UP2 1357 aaKnown RBP23.02■■□□□ 1.28
SNX1-203ENST00000558040 NPC1L1Q9UHC9 1359 aa23.02■■□□□ 1.28
SNX1-203ENST00000558040 MIER1Q8N108 512 aa23.02■■□□□ 1.28
SNX1-203ENST00000558040 AKAP12Q02952 1782 aa23.01■■□□□ 1.27
SNX1-203ENST00000558040 CGNL1Q0VF96 1302 aa23.01■■□□□ 1.27
SNX1-203ENST00000558040 C1orf167Q5SNV9 1468 aa23■■□□□ 1.27
SNX1-203ENST00000558040 PRKRIP1Q9H875 184 aaPredicted RBP23■■□□□ 1.27
SNX1-203ENST00000558040 ACEP12821 1306 aa23■■□□□ 1.27
SNX1-203ENST00000558040 POLR3AO14802 1390 aaPredicted RBP23■■□□□ 1.27
SNX1-203ENST00000558040 MST1RQ04912 1400 aa22.99■■□□□ 1.27
SNX1-203ENST00000558040 EDC4Q6P2E9 1401 aaKnown RBP22.99■■□□□ 1.27
SNX1-203ENST00000558040 MON2Q7Z3U7 1717 aa22.99■■□□□ 1.27
SNX1-203ENST00000558040 AMER1Q5JTC6 1135 aaPredicted RBP22.99■■□□□ 1.27
SNX1-203ENST00000558040 NGDNQ8NEJ9 315 aaKnown RBP22.99■■□□□ 1.27
SNX1-203ENST00000558040 PHF8Q9UPP1 1060 aa22.99■■□□□ 1.27
SNX1-203ENST00000558040 RALBP1Q15311 655 aa22.98■■□□□ 1.27
SNX1-203ENST00000558040 ESCO1Q5FWF5 840 aa22.98■■□□□ 1.27
SNX1-203ENST00000558040 PMFBP1Q8TBY8 1022 aa22.98■■□□□ 1.27
SNX1-203ENST00000558040 NSD2O96028 1365 aa22.98■■□□□ 1.27
SNX1-203ENST00000558040 KIF1AQ12756 1690 aa22.97■■□□□ 1.27
SNX1-203ENST00000558040 CC2D1BQ5T0F9 858 aaKnown RBP22.96■■□□□ 1.27
SNX1-203ENST00000558040 USP6P35125 1406 aa22.96■■□□□ 1.27
SNX1-203ENST00000558040 CNGB1Q14028 1251 aaPredicted RBP22.95■■□□□ 1.26
SNX1-203ENST00000558040 PARD3Q8TEW0 1356 aa22.94■■□□□ 1.26
SNX1-203ENST00000558040 BRD4O60885 1362 aaPredicted RBP22.93■■□□□ 1.26
SNX1-203ENST00000558040 NRKQ7Z2Y5 1582 aa22.92■■□□□ 1.26
SNX1-203ENST00000558040 ORAI2Q96SN7 254 aa22.91■■□□□ 1.26
SNX1-203ENST00000558040 KIF20BQ96Q89 1820 aa22.91■■□□□ 1.26
SNX1-203ENST00000558040 CCER2I3L3R5 266 aa22.9■■□□□ 1.26
SNX1-203ENST00000558040 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.9■■□□□ 1.26
SNX1-203ENST00000558040 TTC21AQ8NDW8 1320 aa22.89■■□□□ 1.26
SNX1-203ENST00000558040 SLAIN2Q9P270 581 aa22.89■■□□□ 1.25
SNX1-203ENST00000558040 TTC21BQ7Z4L5 1316 aa22.88■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms