RNA–Protein interactions for RNA: ENST00000557713.5

SCFD1-224, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 556 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-224ENST00000557713 ADAMTS2O95450 1211 aa23.83■■□□□ 1.41
SCFD1-224ENST00000557713 RBM6P78332 1123 aaKnown RBP23.83■■□□□ 1.41
SCFD1-224ENST00000557713 NGLY1Q96IV0 654 aa23.83■■□□□ 1.41
SCFD1-224ENST00000557713 WAPLQ7Z5K2 1190 aa23.81■■□□□ 1.4
SCFD1-224ENST00000557713 TECPR2O15040 1411 aa23.81■■□□□ 1.4
SCFD1-224ENST00000557713 CDC42BPGQ6DT37 1551 aa23.81■■□□□ 1.4
SCFD1-224ENST00000557713 LRPPRCP42704 1394 aaKnown RBP23.8■■□□□ 1.4
SCFD1-224ENST00000557713 ESCO1Q5FWF5 840 aa23.8■■□□□ 1.4
SCFD1-224ENST00000557713 STK26Q9P289 416 aa23.8■■□□□ 1.4
SCFD1-224ENST00000557713 IFT172Q9UG01 1749 aa23.8■■□□□ 1.4
SCFD1-224ENST00000557713 ABCC11Q96J66 1382 aa23.79■■□□□ 1.4
SCFD1-224ENST00000557713 TMEM132EQ6IEE7 984 aa23.79■■□□□ 1.4
SCFD1-224ENST00000557713 RGS12O14924 1447 aa23.77■■□□□ 1.4
SCFD1-224ENST00000557713 NPHP3Q7Z494 1330 aa23.77■■□□□ 1.4
SCFD1-224ENST00000557713 PIK3C2GO75747 1445 aa23.76■■□□□ 1.39
SCFD1-224ENST00000557713 FNBP4Q8N3X1 1017 aaPredicted RBP23.76■■□□□ 1.39
SCFD1-224ENST00000557713 COL22A1Q8NFW1 1626 aaPredicted RBP23.76■■□□□ 1.39
SCFD1-224ENST00000557713 USP21Q9UK80 565 aa23.75■■□□□ 1.39
SCFD1-224ENST00000557713 PLEKHH1Q9ULM0 1364 aa23.75■■□□□ 1.39
SCFD1-224ENST00000557713 PXDNQ92626 1479 aa23.75■■□□□ 1.39
SCFD1-224ENST00000557713 FOXO3O43524 673 aa23.74■■□□□ 1.39
SCFD1-224ENST00000557713 ACIN1Q9UKV3 1341 aaKnown RBP23.74■■□□□ 1.39
SCFD1-224ENST00000557713 NUTM2FA1L443 756 aa23.72■■□□□ 1.39
SCFD1-224ENST00000557713 SIRT1Q96EB6 747 aa23.72■■□□□ 1.39
SCFD1-224ENST00000557713 C14orf93Q9H972 538 aaKnown RBP23.72■■□□□ 1.39
SCFD1-224ENST00000557713 YTHDC2Q9H6S0 1430 aaKnown RBP23.72■■□□□ 1.39
SCFD1-224ENST00000557713 MYOM2P54296 1465 aa23.72■■□□□ 1.39
SCFD1-224ENST00000557713 KNDC1Q76NI1 1749 aa23.72■■□□□ 1.39
SCFD1-224ENST00000557713 XPCQ01831 940 aaPredicted RBP23.71■■□□□ 1.39
SCFD1-224ENST00000557713 TRPC5Q9UL62 973 aaPredicted RBP23.71■■□□□ 1.39
SCFD1-224ENST00000557713 NRXN1Q9ULB1 1477 aa23.68■■□□□ 1.38
SCFD1-224ENST00000557713 ATRNO75882 1429 aa23.67■■□□□ 1.38
SCFD1-224ENST00000557713 FMN2Q9NZ56 1722 aa23.66■■□□□ 1.38
SCFD1-224ENST00000557713 BCL9LQ86UU0 1499 aa23.65■■□□□ 1.38
SCFD1-224ENST00000557713 CFAP70Q5T0N1 1121 aa23.65■■□□□ 1.38
SCFD1-224ENST00000557713 DHX57Q6P158 1386 aaKnown RBP23.64■■□□□ 1.37
SCFD1-224ENST00000557713 SPATA31A3Q5VYP0 1347 aa23.63■■□□□ 1.37
SCFD1-224ENST00000557713 KRT28Q7Z3Y7 464 aa23.62■■□□□ 1.37
SCFD1-224ENST00000557713 MARF1Q9Y4F3 1742 aaKnown RBP23.62■■□□□ 1.37
SCFD1-224ENST00000557713 ATAD2Q6PL18 1390 aa23.61■■□□□ 1.37
SCFD1-224ENST00000557713 KIF1AQ12756 1690 aa23.6■■□□□ 1.37
SCFD1-224ENST00000557713 RAB3GAP2Q9H2M9 1393 aa23.6■■□□□ 1.37
SCFD1-224ENST00000557713 PHF8Q9UPP1 1060 aa23.58■■□□□ 1.37
SCFD1-224ENST00000557713 GJD4Q96KN9 370 aaPredicted RBP23.57■■□□□ 1.36
SCFD1-224ENST00000557713 PRAM1Q96QH2 718 aa23.57■■□□□ 1.36
SCFD1-224ENST00000557713 SAFB2Q14151 953 aaKnown RBP eCLIP23.55■■□□□ 1.36
SCFD1-224ENST00000557713 RGPD8O14715 1765 aaPredicted RBP23.55■■□□□ 1.36
SCFD1-224ENST00000557713 SLIT2O94813 1529 aa23.54■■□□□ 1.36
SCFD1-224ENST00000557713 PSME1Q06323 249 aa23.54■■□□□ 1.36
SCFD1-224ENST00000557713 UNC5CLQ8IV45 518 aa23.54■■□□□ 1.36
SCFD1-224ENST00000557713 DLC1Q96QB1 1528 aa23.54■■□□□ 1.36
SCFD1-224ENST00000557713 POGKQ9P215 609 aa23.52■■□□□ 1.36
SCFD1-224ENST00000557713 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.52■■□□□ 1.36
SCFD1-224ENST00000557713 TNS3Q68CZ2 1445 aa23.51■■□□□ 1.35
SCFD1-224ENST00000557713 ADGRB1O14514 1584 aa23.51■■□□□ 1.35
SCFD1-224ENST00000557713 SBNO1A3KN83 1393 aa23.51■■□□□ 1.35
SCFD1-224ENST00000557713 USP32Q8NFA0 1604 aa23.49■■□□□ 1.35
SCFD1-224ENST00000557713 CABLES1Q8TDN4 633 aa23.49■■□□□ 1.35
SCFD1-224ENST00000557713 ANKARQ7Z5J8 1434 aa23.48■■□□□ 1.35
SCFD1-224ENST00000557713 RALGAPBQ86X10 1494 aa23.48■■□□□ 1.35
SCFD1-224ENST00000557713 GLI3P10071 1580 aa23.48■■□□□ 1.35
SCFD1-224ENST00000557713 CCDC125Q86Z20 511 aa23.47■■□□□ 1.35
SCFD1-224ENST00000557713 PMFBP1Q8TBY8 1022 aa23.47■■□□□ 1.35
SCFD1-224ENST00000557713 TRAK1Q9UPV9 953 aa23.47■■□□□ 1.35
SCFD1-224ENST00000557713 ADGRB2O60241 1585 aa23.46■■□□□ 1.35
SCFD1-224ENST00000557713 DCAF11Q8TEB1 546 aa23.46■■□□□ 1.35
SCFD1-224ENST00000557713 KDM2AQ9Y2K7 1162 aa23.46■■□□□ 1.35
SCFD1-224ENST00000557713 HAP1P54257 671 aaPredicted RBP23.45■■□□□ 1.34
SCFD1-224ENST00000557713 ARHGEF10O15013 1369 aa23.44■■□□□ 1.34
SCFD1-224ENST00000557713 HRCP23327 699 aa23.44■■□□□ 1.34
SCFD1-224ENST00000557713 LMOD2Q6P5Q4 547 aa23.44■■□□□ 1.34
SCFD1-224ENST00000557713 STAC3Q96MF2 364 aa23.44■■□□□ 1.34
SCFD1-224ENST00000557713 VPS72Q15906 364 aa23.43■■□□□ 1.34
SCFD1-224ENST00000557713 HIRIP3Q9BW71 556 aaPredicted RBP23.43■■□□□ 1.34
SCFD1-224ENST00000557713 PLEKHG5O94827 1062 aa23.42■■□□□ 1.34
SCFD1-224ENST00000557713 EP400Q96L91 3159 aa23.42■■□□□ 1.34
SCFD1-224ENST00000557713 MINK1Q8N4C8 1332 aaPredicted RBP23.41■■□□□ 1.34
SCFD1-224ENST00000557713 PRR36Q9H6K5 1346 aa23.41■■□□□ 1.34
SCFD1-224ENST00000557713 FAM83GA6ND36 823 aa23.4■■□□□ 1.34
SCFD1-224ENST00000557713 WASLO00401 505 aaPredicted RBP23.4■■□□□ 1.34
SCFD1-224ENST00000557713 ONECUT3O60422 494 aaPredicted RBP23.4■■□□□ 1.34
SCFD1-224ENST00000557713 ABCA3Q99758 1704 aa23.39■■□□□ 1.34
SCFD1-224ENST00000557713 SEPT12Q8IYM1 358 aa23.38■■□□□ 1.33
SCFD1-224ENST00000557713 ZRANB1Q9UGI0 708 aa23.38■■□□□ 1.33
SCFD1-224ENST00000557713 NWD2Q9ULI1 1742 aa23.38■■□□□ 1.33
SCFD1-224ENST00000557713 EIF3AQ14152 1382 aaKnown RBP23.38■■□□□ 1.33
SCFD1-224ENST00000557713 PLCH1Q4KWH8 1693 aa23.38■■□□□ 1.33
SCFD1-224ENST00000557713 TRPM3Q9HCF6 1732 aaPredicted RBP23.37■■□□□ 1.33
SCFD1-224ENST00000557713 TULP4Q9NRJ4 1543 aa23.37■■□□□ 1.33
SCFD1-224ENST00000557713 GPRASP1Q5JY77 1395 aa23.36■■□□□ 1.33
SCFD1-224ENST00000557713 BRWD3Q6RI45 1802 aa23.35■■□□□ 1.33
SCFD1-224ENST00000557713 BLMP54132 1417 aaPredicted RBP23.34■■□□□ 1.33
SCFD1-224ENST00000557713 CCDC9Q9Y3X0 531 aaKnown RBP23.34■■□□□ 1.33
SCFD1-224ENST00000557713 ALS2Q96Q42 1657 aa23.34■■□□□ 1.33
SCFD1-224ENST00000557713 NGDNQ8NEJ9 315 aaKnown RBP23.31■■□□□ 1.32
SCFD1-224ENST00000557713 BTG4Q9NY30 223 aa23.31■■□□□ 1.32
SCFD1-224ENST00000557713 KRT27Q7Z3Y8 459 aa23.29■■□□□ 1.32
SCFD1-224ENST00000557713 ARHGEF28Q8N1W1 1705 aaKnown RBP23.29■■□□□ 1.32
SCFD1-224ENST00000557713 NUDT16Q96DE0 195 aaKnown RBP23.29■■□□□ 1.32
SCFD1-224ENST00000557713 NRAPQ86VF7 1730 aa23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms