RNA–Protein interactions for RNA: ENST00000557703.5

SHMT2-234, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-234ENST00000557703 PRAM1Q96QH2 718 aa19.46■□□□□ 0.71
SHMT2-234ENST00000557703 RALGAPBQ86X10 1494 aa19.46■□□□□ 0.71
SHMT2-234ENST00000557703 EIF3AQ14152 1382 aaKnown RBP19.45■□□□□ 0.7
SHMT2-234ENST00000557703 WAPLQ7Z5K2 1190 aa19.45■□□□□ 0.7
SHMT2-234ENST00000557703 RBM33Q96EV2 1170 aaKnown RBP19.45■□□□□ 0.7
SHMT2-234ENST00000557703 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.45■□□□□ 0.7
SHMT2-234ENST00000557703 CARD11Q9BXL7 1154 aa19.42■□□□□ 0.7
SHMT2-234ENST00000557703 CDC42BPGQ6DT37 1551 aa19.41■□□□□ 0.7
SHMT2-234ENST00000557703 CENPJQ9HC77 1338 aaPredicted RBP19.4■□□□□ 0.7
SHMT2-234ENST00000557703 NALCNQ8IZF0 1738 aa19.39■□□□□ 0.7
SHMT2-234ENST00000557703 PLEKHH1Q9ULM0 1364 aa19.39■□□□□ 0.69
SHMT2-234ENST00000557703 ARHGEF28Q8N1W1 1705 aaKnown RBP19.39■□□□□ 0.69
SHMT2-234ENST00000557703 ADGRB2O60241 1585 aa19.38■□□□□ 0.69
SHMT2-234ENST00000557703 MST1RQ04912 1400 aa19.37■□□□□ 0.69
SHMT2-234ENST00000557703 SBNO2Q9Y2G9 1366 aa19.37■□□□□ 0.69
SHMT2-234ENST00000557703 PIP4K2BP78356 416 aa19.36■□□□□ 0.69
SHMT2-234ENST00000557703 WASLO00401 505 aaPredicted RBP19.35■□□□□ 0.69
SHMT2-234ENST00000557703 ANKARQ7Z5J8 1434 aa19.34■□□□□ 0.69
SHMT2-234ENST00000557703 SCAF1Q9H7N4 1312 aaKnown RBP19.34■□□□□ 0.69
SHMT2-234ENST00000557703 C1orf167Q5SNV9 1468 aa19.34■□□□□ 0.69
SHMT2-234ENST00000557703 SAFB2Q14151 953 aaKnown RBP eCLIP19.33■□□□□ 0.68
SHMT2-234ENST00000557703 MINK1Q8N4C8 1332 aaPredicted RBP19.32■□□□□ 0.68
SHMT2-234ENST00000557703 BRINP3Q76B58 766 aa19.31■□□□□ 0.68
SHMT2-234ENST00000557703 PUS7Q96PZ0 661 aaKnown RBP19.31■□□□□ 0.68
SHMT2-234ENST00000557703 EVC2Q86UK5 1308 aa19.3■□□□□ 0.68
SHMT2-234ENST00000557703 FMN2Q9NZ56 1722 aa19.29■□□□□ 0.68
SHMT2-234ENST00000557703 ROBO1Q9Y6N7 1651 aa19.28■□□□□ 0.68
SHMT2-234ENST00000557703 TULP4Q9NRJ4 1543 aa19.27■□□□□ 0.68
SHMT2-234ENST00000557703 ESCO1Q5FWF5 840 aa19.27■□□□□ 0.68
SHMT2-234ENST00000557703 HIRIP3Q9BW71 556 aaPredicted RBP19.27■□□□□ 0.68
SHMT2-234ENST00000557703 CDK19Q9BWU1 502 aa19.27■□□□□ 0.68
SHMT2-234ENST00000557703 CCDC61Q9Y6R9 512 aa19.26■□□□□ 0.67
SHMT2-234ENST00000557703 NPHP3Q7Z494 1330 aa19.25■□□□□ 0.67
SHMT2-234ENST00000557703 QRICH2Q9H0J4 1663 aa19.25■□□□□ 0.67
SHMT2-234ENST00000557703 USP47Q96K76 1375 aa19.25■□□□□ 0.67
SHMT2-234ENST00000557703 AHDC1Q5TGY3 1603 aaPredicted RBP19.25■□□□□ 0.67
SHMT2-234ENST00000557703 ST20-MTHFSA0A0A6YYL1 179 aa19.24■□□□□ 0.67
SHMT2-234ENST00000557703 ORAI2Q96SN7 254 aa19.24■□□□□ 0.67
SHMT2-234ENST00000557703 HSPA1LP34931 641 aa19.23■□□□□ 0.67
SHMT2-234ENST00000557703 EIF4G2P78344 907 aaKnown RBP eCLIP19.23■□□□□ 0.67
SHMT2-234ENST00000557703 CDCA8Q53HL2 280 aa19.23■□□□□ 0.67
SHMT2-234ENST00000557703 NUDT16Q96DE0 195 aaKnown RBP19.23■□□□□ 0.67
SHMT2-234ENST00000557703 PHF8Q9UPP1 1060 aa19.23■□□□□ 0.67
SHMT2-234ENST00000557703 KIF1AQ12756 1690 aa19.22■□□□□ 0.67
SHMT2-234ENST00000557703 SRPK2P78362 688 aaKnown RBP19.22■□□□□ 0.67
SHMT2-234ENST00000557703 LRRC59Q96AG4 307 aaKnown RBP19.22■□□□□ 0.67
SHMT2-234ENST00000557703 ATAD2Q6PL18 1390 aa19.21■□□□□ 0.67
SHMT2-234ENST00000557703 PLEKHG3A1L390 1219 aa19.21■□□□□ 0.67
SHMT2-234ENST00000557703 ZEB1P37275 1124 aaPredicted RBP19.21■□□□□ 0.67
SHMT2-234ENST00000557703 TESK2Q96S53 571 aa19.21■□□□□ 0.67
SHMT2-234ENST00000557703 SOS2Q07890 1332 aaPredicted RBP19.21■□□□□ 0.67
SHMT2-234ENST00000557703 PSME1Q06323 249 aa19.2■□□□□ 0.66
SHMT2-234ENST00000557703 NUTM2FA1L443 756 aa19.19■□□□□ 0.66
SHMT2-234ENST00000557703 TMF1P82094 1093 aa19.19■□□□□ 0.66
SHMT2-234ENST00000557703 ATP7BP35670 1465 aa19.19■□□□□ 0.66
SHMT2-234ENST00000557703 ITSN1Q15811 1721 aa19.19■□□□□ 0.66
SHMT2-234ENST00000557703 BRD4O60885 1362 aaPredicted RBP19.19■□□□□ 0.66
SHMT2-234ENST00000557703 NHSL1Q5SYE7 1610 aa19.18■□□□□ 0.66
SHMT2-234ENST00000557703 PRR36Q9H6K5 1346 aa19.18■□□□□ 0.66
SHMT2-234ENST00000557703 FOXO3O43524 673 aa19.17■□□□□ 0.66
SHMT2-234ENST00000557703 JCADQ9P266 1359 aa19.17■□□□□ 0.66
SHMT2-234ENST00000557703 NINLQ9Y2I6 1382 aa19.17■□□□□ 0.66
SHMT2-234ENST00000557703 PHLPP1O60346 1717 aa19.17■□□□□ 0.66
SHMT2-234ENST00000557703 USP32Q8NFA0 1604 aa19.16■□□□□ 0.66
SHMT2-234ENST00000557703 POLR3AO14802 1390 aaPredicted RBP19.16■□□□□ 0.66
SHMT2-234ENST00000557703 NGDNQ8NEJ9 315 aaKnown RBP19.15■□□□□ 0.66
SHMT2-234ENST00000557703 ZNF692Q9BU19 519 aaPredicted RBP19.15■□□□□ 0.66
SHMT2-234ENST00000557703 CABP2Q9NPB3 220 aa19.15■□□□□ 0.66
SHMT2-234ENST00000557703 SBNO1A3KN83 1393 aa19.14■□□□□ 0.65
SHMT2-234ENST00000557703 COL16A1Q07092 1604 aaPredicted RBP19.14■□□□□ 0.65
SHMT2-234ENST00000557703 RGPD8O14715 1765 aaPredicted RBP19.14■□□□□ 0.65
SHMT2-234ENST00000557703 KRT28Q7Z3Y7 464 aa19.13■□□□□ 0.65
SHMT2-234ENST00000557703 PPIP5K1Q6PFW1 1433 aa19.12■□□□□ 0.65
SHMT2-234ENST00000557703 SPATA31A6Q5VVP1 1343 aa19.12■□□□□ 0.65
SHMT2-234ENST00000557703 PMFBP1Q8TBY8 1022 aa19.12■□□□□ 0.65
SHMT2-234ENST00000557703 TOPAZ1Q8N9V7 1692 aa19.11■□□□□ 0.65
SHMT2-234ENST00000557703 PXDNQ92626 1479 aa19.11■□□□□ 0.65
SHMT2-234ENST00000557703 CABP1Q9NZU7 370 aa19.1■□□□□ 0.65
SHMT2-234ENST00000557703 ARHGEF10O15013 1369 aa19.09■□□□□ 0.65
SHMT2-234ENST00000557703 ACEP12821 1306 aa19.09■□□□□ 0.65
SHMT2-234ENST00000557703 SPATA31A3Q5VYP0 1347 aa19.09■□□□□ 0.65
SHMT2-234ENST00000557703 HSPA5P11021 654 aaKnown RBP19.09■□□□□ 0.65
SHMT2-234ENST00000557703 DDX17Q92841 729 aaKnown RBP19.07■□□□□ 0.64
SHMT2-234ENST00000557703 TERF2IPQ9NYB0 399 aa19.07■□□□□ 0.64
SHMT2-234ENST00000557703 SHPRHQ149N8 1683 aa19.06■□□□□ 0.64
SHMT2-234ENST00000557703 HDGFL2Q7Z4V5 671 aaPredicted RBP19.05■□□□□ 0.64
SHMT2-234ENST00000557703 CPSF1Q10570 1443 aaKnown RBP19.05■□□□□ 0.64
SHMT2-234ENST00000557703 TNS3Q68CZ2 1445 aa19.05■□□□□ 0.64
SHMT2-234ENST00000557703 PNPLA6Q8IY17 1366 aa19.05■□□□□ 0.64
SHMT2-234ENST00000557703 DISP3Q9P2K9 1392 aa19.04■□□□□ 0.64
SHMT2-234ENST00000557703 USP6P35125 1406 aa19.02■□□□□ 0.64
SHMT2-234ENST00000557703 TMC1Q8TDI8 760 aa19.02■□□□□ 0.64
SHMT2-234ENST00000557703 TTC21AQ8NDW8 1320 aa19.01■□□□□ 0.63
SHMT2-234ENST00000557703 XPCQ01831 940 aaPredicted RBP19.01■□□□□ 0.63
SHMT2-234ENST00000557703 COL22A1Q8NFW1 1626 aaPredicted RBP19■□□□□ 0.63
SHMT2-234ENST00000557703 SLC12A5Q9H2X9 1139 aa19■□□□□ 0.63
SHMT2-234ENST00000557703 KTN1Q86UP2 1357 aaKnown RBP18.99■□□□□ 0.63
SHMT2-234ENST00000557703 TRPM3Q9HCF6 1732 aaPredicted RBP18.99■□□□□ 0.63
SHMT2-234ENST00000557703 SSH2Q76I76 1423 aa18.99■□□□□ 0.63
SHMT2-234ENST00000557703 ANKRD36BQ8N2N9 1353 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms