RNA–Protein interactions for RNA: ENST00000557496.1

FOXN3-216, Transcript of forkhead box N3, humanhuman

TSL 5

Gene FOXN3, Length 228 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3-216ENST00000557496 MMP16P51512 607 aa7.19□□□□□ -1.26
FOXN3-216ENST00000557496 USP46P62068 366 aa7.19□□□□□ -1.26
FOXN3-216ENST00000557496 HLA-CQ95604 372 aa7.19□□□□□ -1.26
FOXN3-216ENST00000557496 FOXC1Q12948 553 aa7.18□□□□□ -1.26
FOXN3-216ENST00000557496 CD2BP2O95400 341 aaKnown RBP7.17□□□□□ -1.26
FOXN3-216ENST00000557496 ZNF787Q6DD87 383 aa7.17□□□□□ -1.26
FOXN3-216ENST00000557496 USB1Q9BQ65 265 aaKnown RBP7.17□□□□□ -1.26
FOXN3-216ENST00000557496 DXOO77932 396 aaKnown RBP7.16□□□□□ -1.26
FOXN3-216ENST00000557496 TOR4AQ9NXH8 423 aa7.16□□□□□ -1.26
FOXN3-216ENST00000557496 GUCA2AQ02747 115 aa7.15□□□□□ -1.26
FOXN3-216ENST00000557496 REPIN1Q9BWE0 567 aaKnown RBP7.15□□□□□ -1.26
FOXN3-216ENST00000557496 ZBTB24O43167 697 aaPredicted RBP7.14□□□□□ -1.27
FOXN3-216ENST00000557496 ZMYND10O75800 440 aa7.14□□□□□ -1.27
FOXN3-216ENST00000557496 TRIM32Q13049 653 aa7.14□□□□□ -1.27
FOXN3-216ENST00000557496 BARGINQ6ZT62 677 aa7.14□□□□□ -1.27
FOXN3-216ENST00000557496 ST8SIA5O15466 376 aa7.13□□□□□ -1.27
FOXN3-216ENST00000557496 KRI1Q8N9T8 703 aaKnown RBP7.13□□□□□ -1.27
FOXN3-216ENST00000557496 AAASQ9NRG9 546 aa7.13□□□□□ -1.27
FOXN3-216ENST00000557496 AVPP01185 164 aa7.12□□□□□ -1.27
FOXN3-216ENST00000557496 AMHR2Q16671 573 aa7.12□□□□□ -1.27
FOXN3-216ENST00000557496 CRIPAKQ8N1N5 446 aa7.12□□□□□ -1.27
FOXN3-216ENST00000557496 ZC3H15Q8WU90 426 aaKnown RBP7.12□□□□□ -1.27
FOXN3-216ENST00000557496 POTECB2RU33 542 aa7.11□□□□□ -1.27
FOXN3-216ENST00000557496 WNT7AO00755 349 aa7.11□□□□□ -1.27
FOXN3-216ENST00000557496 NUTM1Q86Y26 1132 aa7.11□□□□□ -1.27
FOXN3-216ENST00000557496 CYP4X1Q8N118 509 aa7.11□□□□□ -1.27
FOXN3-216ENST00000557496 SYMPKQ92797 1274 aaKnown RBP7.11□□□□□ -1.27
FOXN3-216ENST00000557496 JUNDP17535 347 aa7.1□□□□□ -1.27
FOXN3-216ENST00000557496 SSTR3P32745 418 aaPredicted RBP7.1□□□□□ -1.27
FOXN3-216ENST00000557496 RETREG3Q86VR2 466 aa7.1□□□□□ -1.27
FOXN3-216ENST00000557496 PCDHGC3Q9UN70 934 aa7.1□□□□□ -1.27
FOXN3-216ENST00000557496 TTLL12Q14166 644 aaPredicted RBP7.09□□□□□ -1.27
FOXN3-216ENST00000557496 GIGYF2Q6Y7W6 1299 aaKnown RBP7.09□□□□□ -1.27
FOXN3-216ENST00000557496 ZNF775Q96BV0 537 aaPredicted RBP7.09□□□□□ -1.27
FOXN3-216ENST00000557496 FDX1P10109 184 aa7.08□□□□□ -1.28
FOXN3-216ENST00000557496 CCDC24Q8N4L8 307 aa7.08□□□□□ -1.28
FOXN3-216ENST00000557496 SPIRE2Q8WWL2 714 aa7.08□□□□□ -1.28
FOXN3-216ENST00000557496 MRGPRX2Q96LB1 330 aa7.08□□□□□ -1.28
FOXN3-216ENST00000557496 TTC24A2A3L6 582 aaPredicted RBP7.07□□□□□ -1.28
FOXN3-216ENST00000557496 SMCPP49901 116 aaPredicted RBP7.07□□□□□ -1.28
FOXN3-216ENST00000557496 CTC1Q2NKJ3 1217 aa7.07□□□□□ -1.28
FOXN3-216ENST00000557496 SNIP1Q8TAD8 396 aaKnown RBP7.07□□□□□ -1.28
FOXN3-216ENST00000557496 SMPD1P17405 629 aa7.06□□□□□ -1.28
FOXN3-216ENST00000557496 WNT7BP56706 349 aa7.06□□□□□ -1.28
FOXN3-216ENST00000557496 SKOR1P84550 965 aa7.06□□□□□ -1.28
FOXN3-216ENST00000557496 NUDT12Q9BQG2 462 aa7.06□□□□□ -1.28
FOXN3-216ENST00000557496 DACH1Q9UI36 760 aa7.06□□□□□ -1.28
FOXN3-216ENST00000557496 MOXD2PA6NHM9 499 aa7.05□□□□□ -1.28
FOXN3-216ENST00000557496 C6orf229H3BNL8 230 aa7.05□□□□□ -1.28
FOXN3-216ENST00000557496 AXIN1O15169 862 aa7.05□□□□□ -1.28
FOXN3-216ENST00000557496 NDUFV2P19404 249 aa7.05□□□□□ -1.28
FOXN3-216ENST00000557496 PARP9Q8IXQ6 854 aa7.05□□□□□ -1.28
FOXN3-216ENST00000557496 J3QL48 77 aa7.03□□□□□ -1.28
FOXN3-216ENST00000557496 MS4A1P11836 297 aa7.03□□□□□ -1.28
FOXN3-216ENST00000557496 RC3H1Q5TC82 1133 aaKnown RBP7.03□□□□□ -1.28
FOXN3-216ENST00000557496 PTCRAQ6ISU1 281 aaPredicted RBP7.03□□□□□ -1.28
FOXN3-216ENST00000557496 BEGAINQ9BUH8 593 aa7.03□□□□□ -1.28
FOXN3-216ENST00000557496 TRIM66O15016 1216 aa7.02□□□□□ -1.29
FOXN3-216ENST00000557496 CCNYL3P0C7X3 344 aa7.02□□□□□ -1.29
FOXN3-216ENST00000557496 MTMR2Q13614 643 aa7.02□□□□□ -1.29
FOXN3-216ENST00000557496 PTPRNQ16849 979 aa7.02□□□□□ -1.29
FOXN3-216ENST00000557496 GJA5P36382 358 aa7.01□□□□□ -1.29
FOXN3-216ENST00000557496 PRR7Q8TB68 274 aa7.01□□□□□ -1.29
FOXN3-216ENST00000557496 TBC1D2Q9BYX2 928 aa7.01□□□□□ -1.29
FOXN3-216ENST00000557496 GMPR2Q9P2T1 348 aaKnown RBP7.01□□□□□ -1.29
FOXN3-216ENST00000557496 SPDYE5A6NIY4 337 aa7□□□□□ -1.29
FOXN3-216ENST00000557496 DESI1Q6ICB0 168 aa7□□□□□ -1.29
FOXN3-216ENST00000557496 RSBN1LQ6PCB5 846 aaPredicted RBP7□□□□□ -1.29
FOXN3-216ENST00000557496 HPS1Q92902 700 aa7□□□□□ -1.29
FOXN3-216ENST00000557496 AK7Q96M32 723 aa7□□□□□ -1.29
FOXN3-216ENST00000557496 DIXDC1Q155Q3 683 aa6.99□□□□□ -1.29
FOXN3-216ENST00000557496 UNC93B1Q9H1C4 597 aa6.99□□□□□ -1.29
FOXN3-216ENST00000557496 EVA1BQ9NVM1 165 aa6.99□□□□□ -1.29
FOXN3-216ENST00000557496 SIAH2O43255 324 aa6.98□□□□□ -1.29
FOXN3-216ENST00000557496 SH3BP2P78314 561 aa6.98□□□□□ -1.29
FOXN3-216ENST00000557496 LCE2AQ5TA79 106 aaPredicted RBP6.98□□□□□ -1.29
FOXN3-216ENST00000557496 EHBP1Q8NDI1 1231 aa6.98□□□□□ -1.29
FOXN3-216ENST00000557496 ATP13A2Q9NQ11 1180 aa6.98□□□□□ -1.29
FOXN3-216ENST00000557496 C11orf95C9JLR9 678 aaPredicted RBP6.97□□□□□ -1.29
FOXN3-216ENST00000557496 SPTLC1O15269 473 aa6.97□□□□□ -1.29
FOXN3-216ENST00000557496 ALDH1A1P00352 501 aa6.97□□□□□ -1.29
FOXN3-216ENST00000557496 KCNH2Q12809 1159 aa6.97□□□□□ -1.29
FOXN3-216ENST00000557496 CFAP99D6REC4 459 aa6.96□□□□□ -1.3
FOXN3-216ENST00000557496 PCDHB15Q9Y5E8 787 aa6.96□□□□□ -1.3
FOXN3-216ENST00000557496 HRCP23327 699 aa6.95□□□□□ -1.3
FOXN3-216ENST00000557496 PDE4DQ08499 809 aa6.95□□□□□ -1.3
FOXN3-216ENST00000557496 TREML4Q6UXN2 200 aa6.95□□□□□ -1.3
FOXN3-216ENST00000557496 ZBTB3Q9H5J0 574 aa6.95□□□□□ -1.3
FOXN3-216ENST00000557496 LINC01559Q495D7 138 aa6.94□□□□□ -1.3
FOXN3-216ENST00000557496 PRPF38BQ5VTL8 546 aaKnown RBP6.94□□□□□ -1.3
FOXN3-216ENST00000557496 LYPD8Q6UX82 237 aa6.94□□□□□ -1.3
FOXN3-216ENST00000557496 RIC3Q7Z5B4 369 aa6.94□□□□□ -1.3
FOXN3-216ENST00000557496 ZNF511Q8NB15 262 aa6.94□□□□□ -1.3
FOXN3-216ENST00000557496 BAP1Q92560 729 aa6.94□□□□□ -1.3
FOXN3-216ENST00000557496 TRIM47Q96LD4 638 aa6.94□□□□□ -1.3
FOXN3-216ENST00000557496 SNRPBP14678 240 aaKnown RBP6.93□□□□□ -1.3
FOXN3-216ENST00000557496 SENP2Q9HC62 589 aa6.93□□□□□ -1.3
FOXN3-216ENST00000557496 TLL2Q9Y6L7 1015 aa6.93□□□□□ -1.3
FOXN3-216ENST00000557496 F12P00748 615 aaPredicted RBP6.92□□□□□ -1.3
FOXN3-216ENST00000557496 MYSM1Q5VVJ2 828 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms