RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 PUS7Q96PZ0 661 aaKnown RBP20.86■□□□□ 0.93
SHMT2-231ENST00000557433 ADGRF5Q8IZF2 1346 aa20.85■□□□□ 0.93
SHMT2-231ENST00000557433 KIF3BO15066 747 aa20.84■□□□□ 0.93
SHMT2-231ENST00000557433 RARSP54136 660 aaKnown RBP20.84■□□□□ 0.93
SHMT2-231ENST00000557433 DMRT2Q9Y5R5 561 aa20.84■□□□□ 0.93
SHMT2-231ENST00000557433 ADGRB3O60242 1522 aa20.84■□□□□ 0.93
SHMT2-231ENST00000557433 MORC1Q86VD1 984 aa20.84■□□□□ 0.93
SHMT2-231ENST00000557433 COG6Q9Y2V7 657 aa20.84■□□□□ 0.93
SHMT2-231ENST00000557433 NSD3Q9BZ95 1437 aa20.83■□□□□ 0.93
SHMT2-231ENST00000557433 BRPF3Q9ULD4 1205 aa20.83■□□□□ 0.93
SHMT2-231ENST00000557433 ADGRL1O94910 1474 aa20.83■□□□□ 0.92
SHMT2-231ENST00000557433 NLRP1Q9C000 1473 aa20.83■□□□□ 0.92
SHMT2-231ENST00000557433 ZC3H13Q5T200 1668 aaKnown RBP20.83■□□□□ 0.92
SHMT2-231ENST00000557433 NSD2O96028 1365 aa20.82■□□□□ 0.92
SHMT2-231ENST00000557433 CT47B1P0C2W7 299 aaPredicted RBP20.82■□□□□ 0.92
SHMT2-231ENST00000557433 PANK1Q8TE04 598 aa20.82■□□□□ 0.92
SHMT2-231ENST00000557433 CFAP53Q96M91 514 aa20.82■□□□□ 0.92
SHMT2-231ENST00000557433 RWDD1Q9H446 243 aaPredicted RBP20.81■□□□□ 0.92
SHMT2-231ENST00000557433 MYH16Q9H6N6 1097 aa20.8■□□□□ 0.92
SHMT2-231ENST00000557433 ZNF518AQ6AHZ1 1483 aa20.8■□□□□ 0.92
SHMT2-231ENST00000557433 RTN4Q9NQC3 1192 aaKnown RBP20.8■□□□□ 0.92
SHMT2-231ENST00000557433 MROH2AA6NES4 1674 aa20.8■□□□□ 0.92
SHMT2-231ENST00000557433 UGGT1Q9NYU2 1555 aa20.79■□□□□ 0.92
SHMT2-231ENST00000557433 RPGRIP1LQ68CZ1 1315 aa20.78■□□□□ 0.92
SHMT2-231ENST00000557433 PPRC1Q5VV67 1664 aaKnown RBP20.78■□□□□ 0.92
SHMT2-231ENST00000557433 TCP11L2Q8N4U5 519 aa20.78■□□□□ 0.92
SHMT2-231ENST00000557433 QRICH2Q9H0J4 1663 aa20.77■□□□□ 0.92
SHMT2-231ENST00000557433 TBC1D32Q96NH3 1257 aa20.77■□□□□ 0.92
SHMT2-231ENST00000557433 FAM43AQ8N2R8 423 aa20.76■□□□□ 0.91
SHMT2-231ENST00000557433 C14orf93Q9H972 538 aaKnown RBP20.76■□□□□ 0.91
SHMT2-231ENST00000557433 ANO8Q9HCE9 1232 aaPredicted RBP20.76■□□□□ 0.91
SHMT2-231ENST00000557433 NOS1P29475 1434 aa20.76■□□□□ 0.91
SHMT2-231ENST00000557433 L1TD1Q5T7N2 865 aaKnown RBP20.75■□□□□ 0.91
SHMT2-231ENST00000557433 ADGRB1O14514 1584 aa20.75■□□□□ 0.91
SHMT2-231ENST00000557433 PPLO60437 1756 aa20.74■□□□□ 0.91
SHMT2-231ENST00000557433 ADGRB2O60241 1585 aa20.73■□□□□ 0.91
SHMT2-231ENST00000557433 SEC24BO95487 1268 aa20.73■□□□□ 0.91
SHMT2-231ENST00000557433 ANTXR1Q9H6X2 564 aa20.73■□□□□ 0.91
SHMT2-231ENST00000557433 PDZRN3Q9UPQ7 1066 aa20.72■□□□□ 0.91
SHMT2-231ENST00000557433 PCDHB15Q9Y5E8 787 aa20.72■□□□□ 0.91
SHMT2-231ENST00000557433 MVPQ14764 893 aaKnown RBP20.71■□□□□ 0.91
SHMT2-231ENST00000557433 ANKRD36BQ8N2N9 1353 aa20.7■□□□□ 0.9
SHMT2-231ENST00000557433 KIDINS220Q9ULH0 1771 aa20.7■□□□□ 0.9
SHMT2-231ENST00000557433 ZKSCAN2Q63HK3 967 aa20.7■□□□□ 0.9
SHMT2-231ENST00000557433 MTHFSP49914 203 aa20.69■□□□□ 0.9
SHMT2-231ENST00000557433 DNAJC5Q9H3Z4 198 aa20.69■□□□□ 0.9
SHMT2-231ENST00000557433 RLBP1P12271 317 aa20.68■□□□□ 0.9
SHMT2-231ENST00000557433 SLC12A5Q9H2X9 1139 aa20.68■□□□□ 0.9
SHMT2-231ENST00000557433 EVC2Q86UK5 1308 aa20.68■□□□□ 0.9
SHMT2-231ENST00000557433 HDAC1Q13547 482 aaPredicted RBP20.66■□□□□ 0.9
SHMT2-231ENST00000557433 NEUROD2Q15784 382 aa20.66■□□□□ 0.9
SHMT2-231ENST00000557433 RRP7AQ9Y3A4 280 aaKnown RBP20.66■□□□□ 0.9
SHMT2-231ENST00000557433 DZIP1LQ8IYY4 767 aaKnown RBP20.66■□□□□ 0.9
SHMT2-231ENST00000557433 TBC1D2Q9BYX2 928 aa20.66■□□□□ 0.9
SHMT2-231ENST00000557433 TRAK1Q9UPV9 953 aa20.66■□□□□ 0.9
SHMT2-231ENST00000557433 ABCC11Q96J66 1382 aa20.65■□□□□ 0.9
SHMT2-231ENST00000557433 IL16Q14005 1332 aa20.65■□□□□ 0.9
SHMT2-231ENST00000557433 NPATQ14207 1427 aa20.64■□□□□ 0.89
SHMT2-231ENST00000557433 FTSJ3Q8IY81 847 aaKnown RBP20.64■□□□□ 0.89
SHMT2-231ENST00000557433 RSPH6AQ9H0K4 717 aa20.64■□□□□ 0.89
SHMT2-231ENST00000557433 SLKQ9H2G2 1235 aaPredicted RBP20.63■□□□□ 0.89
SHMT2-231ENST00000557433 DDX19BQ9UMR2 479 aa20.63■□□□□ 0.89
SHMT2-231ENST00000557433 CFAP74Q9C0B2 1584 aa20.63■□□□□ 0.89
SHMT2-231ENST00000557433 POGKQ9P215 609 aa20.63■□□□□ 0.89
SHMT2-231ENST00000557433 GLI2P10070 1586 aa20.62■□□□□ 0.89
SHMT2-231ENST00000557433 HECW2Q9P2P5 1572 aa20.61■□□□□ 0.89
SHMT2-231ENST00000557433 U2AF1L5P0DN76 240 aaPredicted RBP20.61■□□□□ 0.89
SHMT2-231ENST00000557433 TNNT2P45379 298 aaPredicted RBP20.61■□□□□ 0.89
SHMT2-231ENST00000557433 U2AF1Q01081 240 aaKnown RBP eCLIP20.61■□□□□ 0.89
SHMT2-231ENST00000557433 MLH3Q9UHC1 1453 aa20.61■□□□□ 0.89
SHMT2-231ENST00000557433 TULP4Q9NRJ4 1543 aa20.6■□□□□ 0.89
SHMT2-231ENST00000557433 CHMP5Q9NZZ3 219 aa20.6■□□□□ 0.89
SHMT2-231ENST00000557433 ARHGEF28Q8N1W1 1705 aaKnown RBP20.6■□□□□ 0.89
SHMT2-231ENST00000557433 MED14O60244 1454 aa20.59■□□□□ 0.89
SHMT2-231ENST00000557433 CHGAP10645 457 aaKnown RBP20.59■□□□□ 0.89
SHMT2-231ENST00000557433 PNNQ9H307 717 aaKnown RBP20.59■□□□□ 0.89
SHMT2-231ENST00000557433 VGFO15240 615 aaPredicted RBP20.58■□□□□ 0.88
SHMT2-231ENST00000557433 BCL2L13Q9BXK5 485 aa20.58■□□□□ 0.88
SHMT2-231ENST00000557433 C22orf23Q9BZE7 217 aa20.58■□□□□ 0.88
SHMT2-231ENST00000557433 TNNQ9UQP3 1299 aa20.58■□□□□ 0.88
SHMT2-231ENST00000557433 PIK3C2BO00750 1634 aa20.57■□□□□ 0.88
SHMT2-231ENST00000557433 MCM4P33991 863 aa20.57■□□□□ 0.88
SHMT2-231ENST00000557433 SMC5Q8IY18 1101 aa20.57■□□□□ 0.88
SHMT2-231ENST00000557433 SMC4Q9NTJ3 1288 aa20.57■□□□□ 0.88
SHMT2-231ENST00000557433 ASXL2Q76L83 1435 aa20.56■□□□□ 0.88
SHMT2-231ENST00000557433 ATF7IPQ6VMQ6 1270 aa20.56■□□□□ 0.88
SHMT2-231ENST00000557433 ZFYVE9O95405 1425 aa20.56■□□□□ 0.88
SHMT2-231ENST00000557433 ABCC3O15438 1527 aa20.56■□□□□ 0.88
SHMT2-231ENST00000557433 KIF16BQ96L93 1317 aa20.55■□□□□ 0.88
SHMT2-231ENST00000557433 IPO8O15397 1037 aaKnown RBP20.55■□□□□ 0.88
SHMT2-231ENST00000557433 PLEKHF1Q96S99 279 aa20.55■□□□□ 0.88
SHMT2-231ENST00000557433 ISY1Q9ULR0 285 aaKnown RBP20.55■□□□□ 0.88
SHMT2-231ENST00000557433 POGZQ7Z3K3 1410 aa20.55■□□□□ 0.88
SHMT2-231ENST00000557433 CAMSAP1Q5T5Y3 1602 aa20.54■□□□□ 0.88
SHMT2-231ENST00000557433 COL3A1P02461 1466 aaPredicted RBP20.54■□□□□ 0.88
SHMT2-231ENST00000557433 FRMPD1Q5SYB0 1578 aa20.54■□□□□ 0.88
SHMT2-231ENST00000557433 FSD2A1L4K1 749 aa20.54■□□□□ 0.88
SHMT2-231ENST00000557433 TMPOP42166 694 aaKnown RBP20.54■□□□□ 0.88
SHMT2-231ENST00000557433 GOLGA6L3A6NEY3 463 aa20.53■□□□□ 0.88
SHMT2-231ENST00000557433 TRIM27P14373 513 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms