RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 STK26Q9P289 416 aa16.25■□□□□ 0.19
SYNE2-227ENST00000557307 COL22A1Q8NFW1 1626 aaPredicted RBP16.25■□□□□ 0.19
SYNE2-227ENST00000557307 LRPPRCP42704 1394 aaKnown RBP16.25■□□□□ 0.19
SYNE2-227ENST00000557307 NUTM2BA6NNL0 878 aaPredicted RBP16.24■□□□□ 0.19
SYNE2-227ENST00000557307 NUTM2EB1AL46 878 aaPredicted RBP16.24■□□□□ 0.19
SYNE2-227ENST00000557307 NUTM2AQ8IVF1 878 aaPredicted RBP16.24■□□□□ 0.19
SYNE2-227ENST00000557307 YTHDC2Q9H6S0 1430 aaKnown RBP16.24■□□□□ 0.19
SYNE2-227ENST00000557307 MARF1Q9Y4F3 1742 aaKnown RBP16.23■□□□□ 0.19
SYNE2-227ENST00000557307 USP32Q8NFA0 1604 aa16.22■□□□□ 0.19
SYNE2-227ENST00000557307 PXDNQ92626 1479 aa16.22■□□□□ 0.19
SYNE2-227ENST00000557307 ADGRB1O14514 1584 aa16.21■□□□□ 0.19
SYNE2-227ENST00000557307 MEX3CQ5U5Q3 659 aaKnown RBP16.21■□□□□ 0.19
SYNE2-227ENST00000557307 NUTM2FA1L443 756 aa16.2■□□□□ 0.18
SYNE2-227ENST00000557307 CFAP70Q5T0N1 1121 aa16.2■□□□□ 0.18
SYNE2-227ENST00000557307 ABCC11Q96J66 1382 aa16.2■□□□□ 0.18
SYNE2-227ENST00000557307 SOS2Q07890 1332 aaPredicted RBP16.19■□□□□ 0.18
SYNE2-227ENST00000557307 KIF1AQ12756 1690 aa16.19■□□□□ 0.18
SYNE2-227ENST00000557307 AFF2P51816 1311 aa16.18■□□□□ 0.18
SYNE2-227ENST00000557307 ARHGEF28Q8N1W1 1705 aaKnown RBP16.17■□□□□ 0.18
SYNE2-227ENST00000557307 ABCA3Q99758 1704 aa16.17■□□□□ 0.18
SYNE2-227ENST00000557307 XPCQ01831 940 aaPredicted RBP16.17■□□□□ 0.18
SYNE2-227ENST00000557307 LRRC59Q96AG4 307 aaKnown RBP16.17■□□□□ 0.18
SYNE2-227ENST00000557307 C14orf93Q9H972 538 aaKnown RBP16.17■□□□□ 0.18
SYNE2-227ENST00000557307 ADGRB2O60241 1585 aa16.16■□□□□ 0.18
SYNE2-227ENST00000557307 DLC1Q96QB1 1528 aa16.15■□□□□ 0.18
SYNE2-227ENST00000557307 ESCO1Q5FWF5 840 aa16.15■□□□□ 0.18
SYNE2-227ENST00000557307 C8orf37Q96NL8 207 aa16.14■□□□□ 0.17
SYNE2-227ENST00000557307 DHX57Q6P158 1386 aaKnown RBP16.13■□□□□ 0.17
SYNE2-227ENST00000557307 RGS12O14924 1447 aa16.13■□□□□ 0.17
SYNE2-227ENST00000557307 ADAMTS2O95450 1211 aa16.13■□□□□ 0.17
SYNE2-227ENST00000557307 SAFB2Q14151 953 aaKnown RBP eCLIP16.13■□□□□ 0.17
SYNE2-227ENST00000557307 ZNF772Q68DY9 489 aaPredicted RBP16.12■□□□□ 0.17
SYNE2-227ENST00000557307 TRPM3Q9HCF6 1732 aaPredicted RBP16.11■□□□□ 0.17
SYNE2-227ENST00000557307 FOXO3O43524 673 aa16.11■□□□□ 0.17
SYNE2-227ENST00000557307 PRAM1Q96QH2 718 aa16.1■□□□□ 0.17
SYNE2-227ENST00000557307 KDM2AQ9Y2K7 1162 aa16.09■□□□□ 0.17
SYNE2-227ENST00000557307 NPHP3Q7Z494 1330 aa16.09■□□□□ 0.17
SYNE2-227ENST00000557307 ACIN1Q9UKV3 1341 aaKnown RBP16.09■□□□□ 0.17
SYNE2-227ENST00000557307 CDK12Q9NYV4 1490 aaPredicted RBP16.09■□□□□ 0.17
SYNE2-227ENST00000557307 PLCH1Q4KWH8 1693 aa16.08■□□□□ 0.17
SYNE2-227ENST00000557307 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.08■□□□□ 0.17
SYNE2-227ENST00000557307 CRYBG1Q9Y4K1 1723 aa16.08■□□□□ 0.16
SYNE2-227ENST00000557307 DCAF11Q8TEB1 546 aa16.07■□□□□ 0.16
SYNE2-227ENST00000557307 KIAA1210Q9ULL0 1709 aa16.07■□□□□ 0.16
SYNE2-227ENST00000557307 ALS2Q96Q42 1657 aa16.06■□□□□ 0.16
SYNE2-227ENST00000557307 RXRBP28702 533 aa16.06■□□□□ 0.16
SYNE2-227ENST00000557307 SIRT1Q96EB6 747 aa16.06■□□□□ 0.16
SYNE2-227ENST00000557307 TRAK1Q9UPV9 953 aa16.06■□□□□ 0.16
SYNE2-227ENST00000557307 HIRIP3Q9BW71 556 aaPredicted RBP16.05■□□□□ 0.16
SYNE2-227ENST00000557307 TOPAZ1Q8N9V7 1692 aa16.05■□□□□ 0.16
SYNE2-227ENST00000557307 ATRNO75882 1429 aa16.04■□□□□ 0.16
SYNE2-227ENST00000557307 PRR36Q9H6K5 1346 aa16.04■□□□□ 0.16
SYNE2-227ENST00000557307 HRCP23327 699 aa16.04■□□□□ 0.16
SYNE2-227ENST00000557307 NGLY1Q96IV0 654 aa16.04■□□□□ 0.16
SYNE2-227ENST00000557307 ITSN1Q15811 1721 aa16.04■□□□□ 0.16
SYNE2-227ENST00000557307 GLI3P10071 1580 aa16.04■□□□□ 0.16
SYNE2-227ENST00000557307 TULP4Q9NRJ4 1543 aa16.04■□□□□ 0.16
SYNE2-227ENST00000557307 BCL9LQ86UU0 1499 aa16.03■□□□□ 0.16
SYNE2-227ENST00000557307 TNS3Q68CZ2 1445 aa16.03■□□□□ 0.16
SYNE2-227ENST00000557307 SPATA31A3Q5VYP0 1347 aa16.03■□□□□ 0.16
SYNE2-227ENST00000557307 MINK1Q8N4C8 1332 aaPredicted RBP16.03■□□□□ 0.16
SYNE2-227ENST00000557307 UPF1Q92900 1129 aaKnown RBP eCLIP16.03■□□□□ 0.16
SYNE2-227ENST00000557307 QTRT2Q9H974 415 aaKnown RBP16.03■□□□□ 0.16
SYNE2-227ENST00000557307 BRWD3Q6RI45 1802 aa16.03■□□□□ 0.16
SYNE2-227ENST00000557307 PHF8Q9UPP1 1060 aa16.02■□□□□ 0.16
SYNE2-227ENST00000557307 NRAPQ86VF7 1730 aa16.02■□□□□ 0.15
SYNE2-227ENST00000557307 ANKARQ7Z5J8 1434 aa16.02■□□□□ 0.15
SYNE2-227ENST00000557307 EP400Q96L91 3159 aa16.01■□□□□ 0.15
SYNE2-227ENST00000557307 KRT28Q7Z3Y7 464 aa16.01■□□□□ 0.15
SYNE2-227ENST00000557307 POGKQ9P215 609 aa16.01■□□□□ 0.15
SYNE2-227ENST00000557307 USP21Q9UK80 565 aa16.01■□□□□ 0.15
SYNE2-227ENST00000557307 ATP7BP35670 1465 aa16■□□□□ 0.15
SYNE2-227ENST00000557307 PLEKHG5O94827 1062 aa16■□□□□ 0.15
SYNE2-227ENST00000557307 RBM6P78332 1123 aaKnown RBP16■□□□□ 0.15
SYNE2-227ENST00000557307 FNBP4Q8N3X1 1017 aaPredicted RBP16■□□□□ 0.15
SYNE2-227ENST00000557307 PMFBP1Q8TBY8 1022 aa16■□□□□ 0.15
SYNE2-227ENST00000557307 SLIT2O94813 1529 aa15.99■□□□□ 0.15
SYNE2-227ENST00000557307 CABLES1Q8TDN4 633 aa15.99■□□□□ 0.15
SYNE2-227ENST00000557307 NWD2Q9ULI1 1742 aa15.99■□□□□ 0.15
SYNE2-227ENST00000557307 QRICH2Q9H0J4 1663 aa15.99■□□□□ 0.15
SYNE2-227ENST00000557307 PHRF1Q9P1Y6 1649 aaKnown RBP15.97■□□□□ 0.15
SYNE2-227ENST00000557307 TRPM1Q7Z4N2 1603 aa15.97■□□□□ 0.15
SYNE2-227ENST00000557307 SBNO1A3KN83 1393 aa15.96■□□□□ 0.15
SYNE2-227ENST00000557307 NBPF1Q3BBV0 1214 aa15.95■□□□□ 0.14
SYNE2-227ENST00000557307 WASLO00401 505 aaPredicted RBP15.94■□□□□ 0.14
SYNE2-227ENST00000557307 TRPC5Q9UL62 973 aaPredicted RBP15.94■□□□□ 0.14
SYNE2-227ENST00000557307 RALGAPBQ86X10 1494 aa15.94■□□□□ 0.14
SYNE2-227ENST00000557307 COL14A1Q05707 1796 aaKnown RBP15.92■□□□□ 0.14
SYNE2-227ENST00000557307 LMOD2Q6P5Q4 547 aa15.91■□□□□ 0.14
SYNE2-227ENST00000557307 SIN3AQ96ST3 1273 aa15.91■□□□□ 0.14
SYNE2-227ENST00000557307 PSME1Q06323 249 aa15.9■□□□□ 0.14
SYNE2-227ENST00000557307 ARHGEF10O15013 1369 aa15.89■□□□□ 0.13
SYNE2-227ENST00000557307 EIF3AQ14152 1382 aaKnown RBP15.88■□□□□ 0.13
SYNE2-227ENST00000557307 NRKQ7Z2Y5 1582 aa15.88■□□□□ 0.13
SYNE2-227ENST00000557307 UNC5CLQ8IV45 518 aa15.88■□□□□ 0.13
SYNE2-227ENST00000557307 GJD4Q96KN9 370 aaPredicted RBP15.88■□□□□ 0.13
SYNE2-227ENST00000557307 STAC3Q96MF2 364 aa15.88■□□□□ 0.13
SYNE2-227ENST00000557307 NUDT16Q96DE0 195 aaKnown RBP15.87■□□□□ 0.13
SYNE2-227ENST00000557307 ATAD2Q6PL18 1390 aa15.87■□□□□ 0.13
SYNE2-227ENST00000557307 L3MBTL2Q969R5 705 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms