RNA–Protein interactions for RNA: ENST00000556909.1

VIPAS39-209, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-209ENST00000556909 ADGRF5Q8IZF2 1346 aa27.43■■□□□ 1.98
VIPAS39-209ENST00000556909 TECPR2O15040 1411 aa27.42■■□□□ 1.98
VIPAS39-209ENST00000556909 ADAMTS2O95450 1211 aa27.42■■□□□ 1.98
VIPAS39-209ENST00000556909 QTRT2Q9H974 415 aaKnown RBP27.4■■□□□ 1.98
VIPAS39-209ENST00000556909 MARF1Q9Y4F3 1742 aaKnown RBP27.39■■□□□ 1.98
VIPAS39-209ENST00000556909 ANKRD30BQ9BXX2 1392 aa27.39■■□□□ 1.98
VIPAS39-209ENST00000556909 RBM6P78332 1123 aaKnown RBP27.39■■□□□ 1.98
VIPAS39-209ENST00000556909 PXDNQ92626 1479 aa27.38■■□□□ 1.97
VIPAS39-209ENST00000556909 NGLY1Q96IV0 654 aa27.38■■□□□ 1.97
VIPAS39-209ENST00000556909 PIK3C2GO75747 1445 aa27.37■■□□□ 1.97
VIPAS39-209ENST00000556909 RGL3Q3MIN7 710 aa27.37■■□□□ 1.97
VIPAS39-209ENST00000556909 MPHOSPH9Q99550 1183 aa27.37■■□□□ 1.97
VIPAS39-209ENST00000556909 LRPPRCP42704 1394 aaKnown RBP27.36■■□□□ 1.97
VIPAS39-209ENST00000556909 FMN2Q9NZ56 1722 aa27.36■■□□□ 1.97
VIPAS39-209ENST00000556909 MYOM2P54296 1465 aa27.36■■□□□ 1.97
VIPAS39-209ENST00000556909 NPHP3Q7Z494 1330 aa27.35■■□□□ 1.97
VIPAS39-209ENST00000556909 ESCO1Q5FWF5 840 aa27.34■■□□□ 1.97
VIPAS39-209ENST00000556909 STK26Q9P289 416 aa27.33■■□□□ 1.97
VIPAS39-209ENST00000556909 ABCC11Q96J66 1382 aa27.33■■□□□ 1.97
VIPAS39-209ENST00000556909 WAPLQ7Z5K2 1190 aa27.32■■□□□ 1.96
VIPAS39-209ENST00000556909 PLEKHH1Q9ULM0 1364 aa27.32■■□□□ 1.96
VIPAS39-209ENST00000556909 KIF1AQ12756 1690 aa27.31■■□□□ 1.96
VIPAS39-209ENST00000556909 USP21Q9UK80 565 aa27.31■■□□□ 1.96
VIPAS39-209ENST00000556909 TMEM132EQ6IEE7 984 aa27.3■■□□□ 1.96
VIPAS39-209ENST00000556909 FNBP4Q8N3X1 1017 aaPredicted RBP27.29■■□□□ 1.96
VIPAS39-209ENST00000556909 YTHDC2Q9H6S0 1430 aaKnown RBP27.29■■□□□ 1.96
VIPAS39-209ENST00000556909 ATRNO75882 1429 aa27.28■■□□□ 1.96
VIPAS39-209ENST00000556909 FOXO3O43524 673 aa27.27■■□□□ 1.96
VIPAS39-209ENST00000556909 XPCQ01831 940 aaPredicted RBP27.27■■□□□ 1.96
VIPAS39-209ENST00000556909 TRPC5Q9UL62 973 aaPredicted RBP27.27■■□□□ 1.96
VIPAS39-209ENST00000556909 RGPD8O14715 1765 aaPredicted RBP27.27■■□□□ 1.96
VIPAS39-209ENST00000556909 NUTM2FA1L443 756 aa27.26■■□□□ 1.95
VIPAS39-209ENST00000556909 NRXN1Q9ULB1 1477 aa27.25■■□□□ 1.95
VIPAS39-209ENST00000556909 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.24■■□□□ 1.95
VIPAS39-209ENST00000556909 ATAD2Q6PL18 1390 aa27.22■■□□□ 1.95
VIPAS39-209ENST00000556909 BCL9LQ86UU0 1499 aa27.22■■□□□ 1.95
VIPAS39-209ENST00000556909 EP400Q96L91 3159 aa27.19■■□□□ 1.94
VIPAS39-209ENST00000556909 C14orf93Q9H972 538 aaKnown RBP27.19■■□□□ 1.94
VIPAS39-209ENST00000556909 ACIN1Q9UKV3 1341 aaKnown RBP27.18■■□□□ 1.94
VIPAS39-209ENST00000556909 USP32Q8NFA0 1604 aa27.18■■□□□ 1.94
VIPAS39-209ENST00000556909 SIRT1Q96EB6 747 aa27.17■■□□□ 1.94
VIPAS39-209ENST00000556909 SPATA31A3Q5VYP0 1347 aa27.16■■□□□ 1.94
VIPAS39-209ENST00000556909 ABCA3Q99758 1704 aa27.15■■□□□ 1.94
VIPAS39-209ENST00000556909 DHX57Q6P158 1386 aaKnown RBP27.14■■□□□ 1.94
VIPAS39-209ENST00000556909 CFAP70Q5T0N1 1121 aa27.14■■□□□ 1.94
VIPAS39-209ENST00000556909 SLIT2O94813 1529 aa27.12■■□□□ 1.93
VIPAS39-209ENST00000556909 DLC1Q96QB1 1528 aa27.12■■□□□ 1.93
VIPAS39-209ENST00000556909 RAB3GAP2Q9H2M9 1393 aa27.11■■□□□ 1.93
VIPAS39-209ENST00000556909 ADGRB2O60241 1585 aa27.11■■□□□ 1.93
VIPAS39-209ENST00000556909 GLI3P10071 1580 aa27.11■■□□□ 1.93
VIPAS39-209ENST00000556909 TNS3Q68CZ2 1445 aa27.11■■□□□ 1.93
VIPAS39-209ENST00000556909 KRT28Q7Z3Y7 464 aa27.1■■□□□ 1.93
VIPAS39-209ENST00000556909 PLCH1Q4KWH8 1693 aa27.1■■□□□ 1.93
VIPAS39-209ENST00000556909 ADGRB1O14514 1584 aa27.09■■□□□ 1.93
VIPAS39-209ENST00000556909 PHF8Q9UPP1 1060 aa27.09■■□□□ 1.93
VIPAS39-209ENST00000556909 GJD4Q96KN9 370 aaPredicted RBP27.08■■□□□ 1.93
VIPAS39-209ENST00000556909 PRAM1Q96QH2 718 aa27.08■■□□□ 1.93
VIPAS39-209ENST00000556909 NWD2Q9ULI1 1742 aa27.07■■□□□ 1.92
VIPAS39-209ENST00000556909 BRWD3Q6RI45 1802 aa27.06■■□□□ 1.92
VIPAS39-209ENST00000556909 RALGAPBQ86X10 1494 aa27.06■■□□□ 1.92
VIPAS39-209ENST00000556909 SAFB2Q14151 953 aaKnown RBP eCLIP27.06■■□□□ 1.92
VIPAS39-209ENST00000556909 UNC5CLQ8IV45 518 aa27.05■■□□□ 1.92
VIPAS39-209ENST00000556909 SBNO1A3KN83 1393 aa27.04■■□□□ 1.92
VIPAS39-209ENST00000556909 ANKARQ7Z5J8 1434 aa27.04■■□□□ 1.92
VIPAS39-209ENST00000556909 TRPM3Q9HCF6 1732 aaPredicted RBP27.03■■□□□ 1.92
VIPAS39-209ENST00000556909 PSME1Q06323 249 aa27.02■■□□□ 1.92
VIPAS39-209ENST00000556909 SRCAPQ6ZRS2 3230 aa27.01■■□□□ 1.91
VIPAS39-209ENST00000556909 POGKQ9P215 609 aa27■■□□□ 1.91
VIPAS39-209ENST00000556909 ARHGEF10O15013 1369 aa26.99■■□□□ 1.91
VIPAS39-209ENST00000556909 CABLES1Q8TDN4 633 aa26.99■■□□□ 1.91
VIPAS39-209ENST00000556909 ALS2Q96Q42 1657 aa26.98■■□□□ 1.91
VIPAS39-209ENST00000556909 HAP1P54257 671 aaPredicted RBP26.98■■□□□ 1.91
VIPAS39-209ENST00000556909 NRAPQ86VF7 1730 aa26.96■■□□□ 1.91
VIPAS39-209ENST00000556909 TULP4Q9NRJ4 1543 aa26.95■■□□□ 1.91
VIPAS39-209ENST00000556909 PLEKHG5O94827 1062 aa26.95■■□□□ 1.9
VIPAS39-209ENST00000556909 CCDC125Q86Z20 511 aa26.95■■□□□ 1.9
VIPAS39-209ENST00000556909 PMFBP1Q8TBY8 1022 aa26.95■■□□□ 1.9
VIPAS39-209ENST00000556909 TRAK1Q9UPV9 953 aa26.95■■□□□ 1.9
VIPAS39-209ENST00000556909 ARHGEF28Q8N1W1 1705 aaKnown RBP26.95■■□□□ 1.9
VIPAS39-209ENST00000556909 LMOD2Q6P5Q4 547 aa26.94■■□□□ 1.9
VIPAS39-209ENST00000556909 HIRIP3Q9BW71 556 aaPredicted RBP26.93■■□□□ 1.9
VIPAS39-209ENST00000556909 CRYBG1Q9Y4K1 1723 aa26.93■■□□□ 1.9
VIPAS39-209ENST00000556909 VPS72Q15906 364 aa26.92■■□□□ 1.9
VIPAS39-209ENST00000556909 EIF3AQ14152 1382 aaKnown RBP26.92■■□□□ 1.9
VIPAS39-209ENST00000556909 ITSN1Q15811 1721 aa26.91■■□□□ 1.9
VIPAS39-209ENST00000556909 MINK1Q8N4C8 1332 aaPredicted RBP26.9■■□□□ 1.9
VIPAS39-209ENST00000556909 PRR36Q9H6K5 1346 aa26.9■■□□□ 1.9
VIPAS39-209ENST00000556909 BLMP54132 1417 aaPredicted RBP26.9■■□□□ 1.9
VIPAS39-209ENST00000556909 DCAF11Q8TEB1 546 aa26.9■■□□□ 1.9
VIPAS39-209ENST00000556909 KDM2AQ9Y2K7 1162 aa26.9■■□□□ 1.9
VIPAS39-209ENST00000556909 COL14A1Q05707 1796 aaKnown RBP26.89■■□□□ 1.9
VIPAS39-209ENST00000556909 ZRANB1Q9UGI0 708 aa26.89■■□□□ 1.9
VIPAS39-209ENST00000556909 SEPT12Q8IYM1 358 aa26.88■■□□□ 1.89
VIPAS39-209ENST00000556909 GPRASP1Q5JY77 1395 aa26.86■■□□□ 1.89
VIPAS39-209ENST00000556909 CCDC9Q9Y3X0 531 aaKnown RBP26.86■■□□□ 1.89
VIPAS39-209ENST00000556909 FAM83GA6ND36 823 aa26.85■■□□□ 1.89
VIPAS39-209ENST00000556909 WASLO00401 505 aaPredicted RBP26.85■■□□□ 1.89
VIPAS39-209ENST00000556909 ATP7BP35670 1465 aa26.83■■□□□ 1.89
VIPAS39-209ENST00000556909 ONECUT3O60422 494 aaPredicted RBP26.83■■□□□ 1.89
VIPAS39-209ENST00000556909 STAC3Q96MF2 364 aa26.83■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms