RNA–Protein interactions for RNA: ENST00000556310.1

SLIRP-205, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-205ENST00000556310 YTHDC2Q9H6S0 1430 aaKnown RBP16.82■□□□□ 0.28
SLIRP-205ENST00000556310 DHX57Q6P158 1386 aaKnown RBP16.82■□□□□ 0.28
SLIRP-205ENST00000556310 STAC3Q96MF2 364 aa16.82■□□□□ 0.28
SLIRP-205ENST00000556310 C14orf93Q9H972 538 aaKnown RBP16.82■□□□□ 0.28
SLIRP-205ENST00000556310 ADGRB1O14514 1584 aa16.81■□□□□ 0.28
SLIRP-205ENST00000556310 CDC42BPGQ6DT37 1551 aa16.81■□□□□ 0.28
SLIRP-205ENST00000556310 MST1RQ04912 1400 aa16.81■□□□□ 0.28
SLIRP-205ENST00000556310 ABCC11Q96J66 1382 aa16.81■□□□□ 0.28
SLIRP-205ENST00000556310 ATF5Q9Y2D1 282 aaPredicted RBP16.81■□□□□ 0.28
SLIRP-205ENST00000556310 AHDC1Q5TGY3 1603 aaPredicted RBP16.8■□□□□ 0.28
SLIRP-205ENST00000556310 DCAF11Q8TEB1 546 aa16.79■□□□□ 0.28
SLIRP-205ENST00000556310 MED1Q15648 1581 aaPredicted RBP16.79■□□□□ 0.28
SLIRP-205ENST00000556310 KIAA1210Q9ULL0 1709 aa16.79■□□□□ 0.28
SLIRP-205ENST00000556310 COL16A1Q07092 1604 aaPredicted RBP16.78■□□□□ 0.28
SLIRP-205ENST00000556310 CFAP70Q5T0N1 1121 aa16.78■□□□□ 0.28
SLIRP-205ENST00000556310 TMEM132EQ6IEE7 984 aa16.78■□□□□ 0.28
SLIRP-205ENST00000556310 DLC1Q96QB1 1528 aa16.78■□□□□ 0.28
SLIRP-205ENST00000556310 NHSL1Q5SYE7 1610 aa16.78■□□□□ 0.28
SLIRP-205ENST00000556310 STK26Q9P289 416 aa16.77■□□□□ 0.28
SLIRP-205ENST00000556310 KDM2AQ9Y2K7 1162 aa16.76■□□□□ 0.27
SLIRP-205ENST00000556310 FMN2Q9NZ56 1722 aa16.74■□□□□ 0.27
SLIRP-205ENST00000556310 BRINP3Q76B58 766 aa16.74■□□□□ 0.27
SLIRP-205ENST00000556310 PLEKHH1Q9ULM0 1364 aa16.74■□□□□ 0.27
SLIRP-205ENST00000556310 C1orf167Q5SNV9 1468 aa16.73■□□□□ 0.27
SLIRP-205ENST00000556310 SIRT1Q96EB6 747 aa16.73■□□□□ 0.27
SLIRP-205ENST00000556310 DISP3Q9P2K9 1392 aa16.73■□□□□ 0.27
SLIRP-205ENST00000556310 ARHGEF28Q8N1W1 1705 aaKnown RBP16.73■□□□□ 0.27
SLIRP-205ENST00000556310 ADGRB2O60241 1585 aa16.72■□□□□ 0.27
SLIRP-205ENST00000556310 SHPRHQ149N8 1683 aa16.72■□□□□ 0.27
SLIRP-205ENST00000556310 C1QBPQ07021 282 aaKnown RBP16.71■□□□□ 0.27
SLIRP-205ENST00000556310 WAPLQ7Z5K2 1190 aa16.71■□□□□ 0.27
SLIRP-205ENST00000556310 JCADQ9P266 1359 aa16.68■□□□□ 0.26
SLIRP-205ENST00000556310 SIN3AQ96ST3 1273 aa16.68■□□□□ 0.26
SLIRP-205ENST00000556310 KIF1AQ12756 1690 aa16.67■□□□□ 0.26
SLIRP-205ENST00000556310 PRAM1Q96QH2 718 aa16.67■□□□□ 0.26
SLIRP-205ENST00000556310 TRPM1Q7Z4N2 1603 aa16.67■□□□□ 0.26
SLIRP-205ENST00000556310 L3MBTL2Q969R5 705 aa16.65■□□□□ 0.26
SLIRP-205ENST00000556310 TRAK1Q9UPV9 953 aa16.65■□□□□ 0.26
SLIRP-205ENST00000556310 RGPD8O14715 1765 aaPredicted RBP16.64■□□□□ 0.25
SLIRP-205ENST00000556310 NEUROD1Q13562 356 aa16.64■□□□□ 0.25
SLIRP-205ENST00000556310 POGKQ9P215 609 aa16.64■□□□□ 0.25
SLIRP-205ENST00000556310 ORAI2Q96SN7 254 aa16.63■□□□□ 0.25
SLIRP-205ENST00000556310 USP32Q8NFA0 1604 aa16.63■□□□□ 0.25
SLIRP-205ENST00000556310 SAFB2Q14151 953 aaKnown RBP eCLIP16.62■□□□□ 0.25
SLIRP-205ENST00000556310 SPINK5Q9NQ38 1064 aaPredicted RBP16.62■□□□□ 0.25
SLIRP-205ENST00000556310 ANKARQ7Z5J8 1434 aa16.61■□□□□ 0.25
SLIRP-205ENST00000556310 DDX17Q92841 729 aaKnown RBP16.6■□□□□ 0.25
SLIRP-205ENST00000556310 SPATA31A6Q5VVP1 1343 aa16.6■□□□□ 0.25
SLIRP-205ENST00000556310 TULP4Q9NRJ4 1543 aa16.6■□□□□ 0.25
SLIRP-205ENST00000556310 CAPN15O75808 1086 aa16.59■□□□□ 0.25
SLIRP-205ENST00000556310 NBPF1Q3BBV0 1214 aa16.59■□□□□ 0.25
SLIRP-205ENST00000556310 ESCO1Q5FWF5 840 aa16.59■□□□□ 0.25
SLIRP-205ENST00000556310 SOS2Q07890 1332 aaPredicted RBP16.59■□□□□ 0.25
SLIRP-205ENST00000556310 NPHP3Q7Z494 1330 aa16.59■□□□□ 0.25
SLIRP-205ENST00000556310 EIF3AQ14152 1382 aaKnown RBP16.59■□□□□ 0.25
SLIRP-205ENST00000556310 PXDNQ92626 1479 aa16.59■□□□□ 0.25
SLIRP-205ENST00000556310 LRP6O75581 1613 aa16.59■□□□□ 0.25
SLIRP-205ENST00000556310 ITSN1Q15811 1721 aa16.59■□□□□ 0.25
SLIRP-205ENST00000556310 NUTM2FA1L443 756 aa16.58■□□□□ 0.24
SLIRP-205ENST00000556310 LRRC59Q96AG4 307 aaKnown RBP16.58■□□□□ 0.24
SLIRP-205ENST00000556310 TONSLQ96HA7 1378 aa16.58■□□□□ 0.24
SLIRP-205ENST00000556310 QRICH2Q9H0J4 1663 aa16.58■□□□□ 0.24
SLIRP-205ENST00000556310 COL22A1Q8NFW1 1626 aaPredicted RBP16.57■□□□□ 0.24
SLIRP-205ENST00000556310 PNPLA6Q8IY17 1366 aa16.57■□□□□ 0.24
SLIRP-205ENST00000556310 MINK1Q8N4C8 1332 aaPredicted RBP16.57■□□□□ 0.24
SLIRP-205ENST00000556310 HIRIP3Q9BW71 556 aaPredicted RBP16.55■□□□□ 0.24
SLIRP-205ENST00000556310 TOPAZ1Q8N9V7 1692 aa16.55■□□□□ 0.24
SLIRP-205ENST00000556310 ROCK2O75116 1388 aaKnown RBP16.54■□□□□ 0.24
SLIRP-205ENST00000556310 PCGF6Q9BYE7 350 aa16.54■□□□□ 0.24
SLIRP-205ENST00000556310 ZNF219Q9P2Y4 722 aaPredicted RBP16.54■□□□□ 0.24
SLIRP-205ENST00000556310 ATP7BP35670 1465 aa16.54■□□□□ 0.24
SLIRP-205ENST00000556310 RALGAPBQ86X10 1494 aa16.54■□□□□ 0.24
SLIRP-205ENST00000556310 GPRASP1Q5JY77 1395 aa16.53■□□□□ 0.24
SLIRP-205ENST00000556310 WASLO00401 505 aaPredicted RBP16.53■□□□□ 0.24
SLIRP-205ENST00000556310 FOXO3O43524 673 aa16.53■□□□□ 0.24
SLIRP-205ENST00000556310 ILDR2Q71H61 639 aa16.53■□□□□ 0.24
SLIRP-205ENST00000556310 PHF8Q9UPP1 1060 aa16.52■□□□□ 0.24
SLIRP-205ENST00000556310 CENPJQ9HC77 1338 aaPredicted RBP16.51■□□□□ 0.23
SLIRP-205ENST00000556310 PRR36Q9H6K5 1346 aa16.5■□□□□ 0.23
SLIRP-205ENST00000556310 NBPF8Q3BBV2 869 aa16.5■□□□□ 0.23
SLIRP-205ENST00000556310 TRPM3Q9HCF6 1732 aaPredicted RBP16.5■□□□□ 0.23
SLIRP-205ENST00000556310 CLSPNQ9HAW4 1339 aa16.49■□□□□ 0.23
SLIRP-205ENST00000556310 XPCQ01831 940 aaPredicted RBP16.49■□□□□ 0.23
SLIRP-205ENST00000556310 MARF1Q9Y4F3 1742 aaKnown RBP16.49■□□□□ 0.23
SLIRP-205ENST00000556310 TNS3Q68CZ2 1445 aa16.48■□□□□ 0.23
SLIRP-205ENST00000556310 MEX3CQ5U5Q3 659 aaKnown RBP16.48■□□□□ 0.23
SLIRP-205ENST00000556310 RGS17Q9UGC6 210 aaPredicted RBP16.48■□□□□ 0.23
SLIRP-205ENST00000556310 NUTM2BA6NNL0 878 aaPredicted RBP16.47■□□□□ 0.23
SLIRP-205ENST00000556310 NUTM2EB1AL46 878 aaPredicted RBP16.47■□□□□ 0.23
SLIRP-205ENST00000556310 NUTM2AQ8IVF1 878 aaPredicted RBP16.47■□□□□ 0.23
SLIRP-205ENST00000556310 ABCA3Q99758 1704 aa16.47■□□□□ 0.23
SLIRP-205ENST00000556310 SPATA31A3Q5VYP0 1347 aa16.46■□□□□ 0.23
SLIRP-205ENST00000556310 SBNO1A3KN83 1393 aa16.46■□□□□ 0.23
SLIRP-205ENST00000556310 ALS2Q96Q42 1657 aa16.46■□□□□ 0.23
SLIRP-205ENST00000556310 KRT28Q7Z3Y7 464 aa16.45■□□□□ 0.22
SLIRP-205ENST00000556310 PMFBP1Q8TBY8 1022 aa16.45■□□□□ 0.22
SLIRP-205ENST00000556310 CDK19Q9BWU1 502 aa16.45■□□□□ 0.22
SLIRP-205ENST00000556310 PSME1Q06323 249 aa16.44■□□□□ 0.22
SLIRP-205ENST00000556310 NUDT16Q96DE0 195 aaKnown RBP16.44■□□□□ 0.22
SLIRP-205ENST00000556310 ARHGEF10O15013 1369 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms