RNA–Protein interactions for RNA: ENST00000555386.5

PSEN1-213, Transcript of presenilin 1, humanhuman

TSL 1 (best)

Gene PSEN1, Length 1,484 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-213ENST00000555386 ATF3P18847 181 aa13.96□□□□□ -0.17
PSEN1-213ENST00000555386 PTCH1Q13635 1447 aa13.96□□□□□ -0.17
PSEN1-213ENST00000555386 CARD11Q9BXL7 1154 aa13.96□□□□□ -0.17
PSEN1-213ENST00000555386 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.96□□□□□ -0.17
PSEN1-213ENST00000555386 NUTM2FA1L443 756 aa13.95□□□□□ -0.18
PSEN1-213ENST00000555386 TOM1O60784 492 aa13.95□□□□□ -0.18
PSEN1-213ENST00000555386 HIRIP3Q9BW71 556 aaPredicted RBP13.95□□□□□ -0.18
PSEN1-213ENST00000555386 MINK1Q8N4C8 1332 aaPredicted RBP13.95□□□□□ -0.18
PSEN1-213ENST00000555386 ARHGEF28Q8N1W1 1705 aaKnown RBP13.95□□□□□ -0.18
PSEN1-213ENST00000555386 C19orf44Q9H6X5 657 aa13.94□□□□□ -0.18
PSEN1-213ENST00000555386 IQSEC2Q5JU85 1478 aa13.94□□□□□ -0.18
PSEN1-213ENST00000555386 TECPR2O15040 1411 aa13.94□□□□□ -0.18
PSEN1-213ENST00000555386 TIMELESSQ9UNS1 1208 aa13.93□□□□□ -0.18
PSEN1-213ENST00000555386 ADGRL3Q9HAR2 1447 aa13.92□□□□□ -0.18
PSEN1-213ENST00000555386 RALGAPBQ86X10 1494 aa13.92□□□□□ -0.18
PSEN1-213ENST00000555386 FBXO41Q8TF61 875 aa13.92□□□□□ -0.18
PSEN1-213ENST00000555386 ZBTB22O15209 634 aa13.91□□□□□ -0.18
PSEN1-213ENST00000555386 CADPS2Q86UW7 1296 aa13.91□□□□□ -0.18
PSEN1-213ENST00000555386 FAM135BQ49AJ0 1406 aa13.91□□□□□ -0.18
PSEN1-213ENST00000555386 DLC1Q96QB1 1528 aa13.9□□□□□ -0.18
PSEN1-213ENST00000555386 MSH5O43196 834 aa13.9□□□□□ -0.18
PSEN1-213ENST00000555386 SLAIN2Q9P270 581 aa13.9□□□□□ -0.18
PSEN1-213ENST00000555386 NCOA3Q9Y6Q9 1424 aa13.9□□□□□ -0.18
PSEN1-213ENST00000555386 SIRT1Q96EB6 747 aa13.89□□□□□ -0.19
PSEN1-213ENST00000555386 QRICH2Q9H0J4 1663 aa13.89□□□□□ -0.19
PSEN1-213ENST00000555386 CENPJQ9HC77 1338 aaPredicted RBP13.88□□□□□ -0.19
PSEN1-213ENST00000555386 ILDR1Q86SU0 546 aaPredicted RBP13.88□□□□□ -0.19
PSEN1-213ENST00000555386 RGPD8O14715 1765 aaPredicted RBP13.88□□□□□ -0.19
PSEN1-213ENST00000555386 GPRASP1Q5JY77 1395 aa13.87□□□□□ -0.19
PSEN1-213ENST00000555386 EIF3AQ14152 1382 aaKnown RBP13.86□□□□□ -0.19
PSEN1-213ENST00000555386 ROBO1Q9Y6N7 1651 aa13.86□□□□□ -0.19
PSEN1-213ENST00000555386 CDC42BPGQ6DT37 1551 aa13.85□□□□□ -0.19
PSEN1-213ENST00000555386 ESCO1Q5FWF5 840 aa13.85□□□□□ -0.19
PSEN1-213ENST00000555386 ORAI2Q96SN7 254 aa13.85□□□□□ -0.19
PSEN1-213ENST00000555386 FMN2Q9NZ56 1722 aa13.85□□□□□ -0.19
PSEN1-213ENST00000555386 DCCP43146 1447 aa13.84□□□□□ -0.19
PSEN1-213ENST00000555386 MST1RQ04912 1400 aa13.84□□□□□ -0.19
PSEN1-213ENST00000555386 USP47Q96K76 1375 aa13.83□□□□□ -0.19
PSEN1-213ENST00000555386 C1orf167Q5SNV9 1468 aa13.83□□□□□ -0.2
PSEN1-213ENST00000555386 ST20-MTHFSA0A0A6YYL1 179 aa13.83□□□□□ -0.2
PSEN1-213ENST00000555386 WASLO00401 505 aaPredicted RBP13.83□□□□□ -0.2
PSEN1-213ENST00000555386 SRPK2P78362 688 aaKnown RBP13.83□□□□□ -0.2
PSEN1-213ENST00000555386 DDX17Q92841 729 aaKnown RBP13.83□□□□□ -0.2
PSEN1-213ENST00000555386 CDK19Q9BWU1 502 aa13.83□□□□□ -0.2
PSEN1-213ENST00000555386 HSPA1LP34931 641 aa13.82□□□□□ -0.2
PSEN1-213ENST00000555386 BRINP3Q76B58 766 aa13.82□□□□□ -0.2
PSEN1-213ENST00000555386 CABP2Q9NPB3 220 aa13.82□□□□□ -0.2
PSEN1-213ENST00000555386 ADGRB2O60241 1585 aa13.81□□□□□ -0.2
PSEN1-213ENST00000555386 PMFBP1Q8TBY8 1022 aa13.8□□□□□ -0.2
PSEN1-213ENST00000555386 XPCQ01831 940 aaPredicted RBP13.8□□□□□ -0.2
PSEN1-213ENST00000555386 PHLPP1O60346 1717 aa13.79□□□□□ -0.2
PSEN1-213ENST00000555386 EVC2Q86UK5 1308 aa13.79□□□□□ -0.2
PSEN1-213ENST00000555386 NUDT16Q96DE0 195 aaKnown RBP13.79□□□□□ -0.2
PSEN1-213ENST00000555386 PRR36Q9H6K5 1346 aa13.78□□□□□ -0.2
PSEN1-213ENST00000555386 USP32Q8NFA0 1604 aa13.78□□□□□ -0.2
PSEN1-213ENST00000555386 FOXO3O43524 673 aa13.78□□□□□ -0.2
PSEN1-213ENST00000555386 CENPBP07199 599 aaPredicted RBP13.78□□□□□ -0.2
PSEN1-213ENST00000555386 HSPA5P11021 654 aaKnown RBP13.78□□□□□ -0.2
PSEN1-213ENST00000555386 TULP4Q9NRJ4 1543 aa13.77□□□□□ -0.2
PSEN1-213ENST00000555386 EIF4G2P78344 907 aaKnown RBP eCLIP13.77□□□□□ -0.21
PSEN1-213ENST00000555386 POLR3GLQ9BT43 218 aa13.77□□□□□ -0.21
PSEN1-213ENST00000555386 PHF8Q9UPP1 1060 aa13.77□□□□□ -0.21
PSEN1-213ENST00000555386 PLEKHG5O94827 1062 aa13.76□□□□□ -0.21
PSEN1-213ENST00000555386 NGDNQ8NEJ9 315 aaKnown RBP13.75□□□□□ -0.21
PSEN1-213ENST00000555386 TMC1Q8TDI8 760 aa13.74□□□□□ -0.21
PSEN1-213ENST00000555386 TESK2Q96S53 571 aa13.74□□□□□ -0.21
PSEN1-213ENST00000555386 FOXD4L1Q9NU39 408 aa13.74□□□□□ -0.21
PSEN1-213ENST00000555386 ANKARQ7Z5J8 1434 aa13.74□□□□□ -0.21
PSEN1-213ENST00000555386 ITSN1Q15811 1721 aa13.74□□□□□ -0.21
PSEN1-213ENST00000555386 ATP7BP35670 1465 aa13.74□□□□□ -0.21
PSEN1-213ENST00000555386 PSME1Q06323 249 aa13.74□□□□□ -0.21
PSEN1-213ENST00000555386 NHSL1Q5SYE7 1610 aa13.73□□□□□ -0.21
PSEN1-213ENST00000555386 TMF1P82094 1093 aa13.73□□□□□ -0.21
PSEN1-213ENST00000555386 LMOD2Q6P5Q4 547 aa13.73□□□□□ -0.21
PSEN1-213ENST00000555386 CABP1Q9NZU7 370 aa13.73□□□□□ -0.21
PSEN1-213ENST00000555386 CCDC61Q9Y6R9 512 aa13.73□□□□□ -0.21
PSEN1-213ENST00000555386 DISP3Q9P2K9 1392 aa13.72□□□□□ -0.21
PSEN1-213ENST00000555386 PPIP5K1Q6PFW1 1433 aa13.72□□□□□ -0.21
PSEN1-213ENST00000555386 KIF1AQ12756 1690 aa13.72□□□□□ -0.21
PSEN1-213ENST00000555386 NPHP3Q7Z494 1330 aa13.72□□□□□ -0.21
PSEN1-213ENST00000555386 PAK3O75914 559 aaPredicted RBP13.71□□□□□ -0.21
PSEN1-213ENST00000555386 KRT28Q7Z3Y7 464 aa13.71□□□□□ -0.21
PSEN1-213ENST00000555386 AHDC1Q5TGY3 1603 aaPredicted RBP13.71□□□□□ -0.22
PSEN1-213ENST00000555386 SBNO2Q9Y2G9 1366 aa13.71□□□□□ -0.22
PSEN1-213ENST00000555386 COL16A1Q07092 1604 aaPredicted RBP13.7□□□□□ -0.22
PSEN1-213ENST00000555386 ACEP12821 1306 aa13.7□□□□□ -0.22
PSEN1-213ENST00000555386 TOPAZ1Q8N9V7 1692 aa13.7□□□□□ -0.22
PSEN1-213ENST00000555386 NUTM2BA6NNL0 878 aaPredicted RBP13.67□□□□□ -0.22
PSEN1-213ENST00000555386 NUTM2EB1AL46 878 aaPredicted RBP13.67□□□□□ -0.22
PSEN1-213ENST00000555386 NUTM2AQ8IVF1 878 aaPredicted RBP13.67□□□□□ -0.22
PSEN1-213ENST00000555386 LRRC59Q96AG4 307 aaKnown RBP13.67□□□□□ -0.22
PSEN1-213ENST00000555386 SLC12A5Q9H2X9 1139 aa13.67□□□□□ -0.22
PSEN1-213ENST00000555386 ATAD2Q6PL18 1390 aa13.67□□□□□ -0.22
PSEN1-213ENST00000555386 SOS2Q07890 1332 aaPredicted RBP13.67□□□□□ -0.22
PSEN1-213ENST00000555386 MIER1Q8N108 512 aa13.67□□□□□ -0.22
PSEN1-213ENST00000555386 PXDNQ92626 1479 aa13.67□□□□□ -0.22
PSEN1-213ENST00000555386 RNF216Q9NWF9 866 aaPredicted RBP13.67□□□□□ -0.22
PSEN1-213ENST00000555386 PLEKHG3A1L390 1219 aa13.66□□□□□ -0.22
PSEN1-213ENST00000555386 SLC24A1O60721 1099 aa13.66□□□□□ -0.22
PSEN1-213ENST00000555386 NUTM2GQ5VZR2 741 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms