RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 NBPF1Q3BBV0 1214 aa20.45■□□□□ 0.86
SHMT2-217ENST00000555116 MST1RQ04912 1400 aa20.44■□□□□ 0.86
SHMT2-217ENST00000555116 TRAK1Q9UPV9 953 aa20.43■□□□□ 0.86
SHMT2-217ENST00000555116 CDC42BPGQ6DT37 1551 aa20.43■□□□□ 0.86
SHMT2-217ENST00000555116 HSPA1LP34931 641 aa20.42■□□□□ 0.86
SHMT2-217ENST00000555116 PRAM1Q96QH2 718 aa20.42■□□□□ 0.86
SHMT2-217ENST00000555116 NBPF8Q3BBV2 869 aa20.41■□□□□ 0.86
SHMT2-217ENST00000555116 POGKQ9P215 609 aa20.39■□□□□ 0.85
SHMT2-217ENST00000555116 FMN2Q9NZ56 1722 aa20.39■□□□□ 0.85
SHMT2-217ENST00000555116 C1orf167Q5SNV9 1468 aa20.37■□□□□ 0.85
SHMT2-217ENST00000555116 SAFB2Q14151 953 aaKnown RBP eCLIP20.37■□□□□ 0.85
SHMT2-217ENST00000555116 CCER1Q8TC90 406 aaPredicted RBP20.37■□□□□ 0.85
SHMT2-217ENST00000555116 ADGRB2O60241 1585 aa20.37■□□□□ 0.85
SHMT2-217ENST00000555116 BRINP3Q76B58 766 aa20.35■□□□□ 0.85
SHMT2-217ENST00000555116 PHLPP1O60346 1717 aa20.35■□□□□ 0.85
SHMT2-217ENST00000555116 RGPD8O14715 1765 aaPredicted RBP20.34■□□□□ 0.85
SHMT2-217ENST00000555116 AHDC1Q5TGY3 1603 aaPredicted RBP20.34■□□□□ 0.85
SHMT2-217ENST00000555116 ROCK2O75116 1388 aaKnown RBP20.34■□□□□ 0.85
SHMT2-217ENST00000555116 RALGAPBQ86X10 1494 aa20.33■□□□□ 0.85
SHMT2-217ENST00000555116 GPRASP1Q5JY77 1395 aa20.33■□□□□ 0.84
SHMT2-217ENST00000555116 NHSL1Q5SYE7 1610 aa20.33■□□□□ 0.84
SHMT2-217ENST00000555116 MINK1Q8N4C8 1332 aaPredicted RBP20.31■□□□□ 0.84
SHMT2-217ENST00000555116 COL16A1Q07092 1604 aaPredicted RBP20.31■□□□□ 0.84
SHMT2-217ENST00000555116 TIMELESSQ9UNS1 1208 aa20.3■□□□□ 0.84
SHMT2-217ENST00000555116 ORAI2Q96SN7 254 aa20.3■□□□□ 0.84
SHMT2-217ENST00000555116 QRICH2Q9H0J4 1663 aa20.29■□□□□ 0.84
SHMT2-217ENST00000555116 USP32Q8NFA0 1604 aa20.29■□□□□ 0.84
SHMT2-217ENST00000555116 HIRIP3Q9BW71 556 aaPredicted RBP20.28■□□□□ 0.84
SHMT2-217ENST00000555116 NUTM2FA1L443 756 aa20.28■□□□□ 0.84
SHMT2-217ENST00000555116 CENPJQ9HC77 1338 aaPredicted RBP20.26■□□□□ 0.83
SHMT2-217ENST00000555116 WASLO00401 505 aaPredicted RBP20.25■□□□□ 0.83
SHMT2-217ENST00000555116 ESCO1Q5FWF5 840 aa20.25■□□□□ 0.83
SHMT2-217ENST00000555116 ANKARQ7Z5J8 1434 aa20.25■□□□□ 0.83
SHMT2-217ENST00000555116 DDX17Q92841 729 aaKnown RBP20.24■□□□□ 0.83
SHMT2-217ENST00000555116 CARD11Q9BXL7 1154 aa20.24■□□□□ 0.83
SHMT2-217ENST00000555116 TULP4Q9NRJ4 1543 aa20.24■□□□□ 0.83
SHMT2-217ENST00000555116 KIF1AQ12756 1690 aa20.24■□□□□ 0.83
SHMT2-217ENST00000555116 EIF3AQ14152 1382 aaKnown RBP20.22■□□□□ 0.83
SHMT2-217ENST00000555116 PRR36Q9H6K5 1346 aa20.22■□□□□ 0.83
SHMT2-217ENST00000555116 SHPRHQ149N8 1683 aa20.2■□□□□ 0.82
SHMT2-217ENST00000555116 CDK19Q9BWU1 502 aa20.2■□□□□ 0.82
SHMT2-217ENST00000555116 ITSN1Q15811 1721 aa20.19■□□□□ 0.82
SHMT2-217ENST00000555116 SOS2Q07890 1332 aaPredicted RBP20.19■□□□□ 0.82
SHMT2-217ENST00000555116 ATP7BP35670 1465 aa20.18■□□□□ 0.82
SHMT2-217ENST00000555116 JCADQ9P266 1359 aa20.18■□□□□ 0.82
SHMT2-217ENST00000555116 PHF8Q9UPP1 1060 aa20.18■□□□□ 0.82
SHMT2-217ENST00000555116 TOPAZ1Q8N9V7 1692 aa20.18■□□□□ 0.82
SHMT2-217ENST00000555116 NPHP3Q7Z494 1330 aa20.17■□□□□ 0.82
SHMT2-217ENST00000555116 PXDNQ92626 1479 aa20.17■□□□□ 0.82
SHMT2-217ENST00000555116 FOXO3O43524 673 aa20.17■□□□□ 0.82
SHMT2-217ENST00000555116 MED1Q15648 1581 aaPredicted RBP20.16■□□□□ 0.82
SHMT2-217ENST00000555116 NUDT16Q96DE0 195 aaKnown RBP20.16■□□□□ 0.82
SHMT2-217ENST00000555116 LRRC59Q96AG4 307 aaKnown RBP20.15■□□□□ 0.82
SHMT2-217ENST00000555116 SBNO2Q9Y2G9 1366 aa20.14■□□□□ 0.81
SHMT2-217ENST00000555116 XPCQ01831 940 aaPredicted RBP20.13■□□□□ 0.81
SHMT2-217ENST00000555116 PMFBP1Q8TBY8 1022 aa20.13■□□□□ 0.81
SHMT2-217ENST00000555116 EVC2Q86UK5 1308 aa20.11■□□□□ 0.81
SHMT2-217ENST00000555116 PNPLA6Q8IY17 1366 aa20.11■□□□□ 0.81
SHMT2-217ENST00000555116 CABP2Q9NPB3 220 aa20.11■□□□□ 0.81
SHMT2-217ENST00000555116 SRPK2P78362 688 aaKnown RBP20.11■□□□□ 0.81
SHMT2-217ENST00000555116 KRT28Q7Z3Y7 464 aa20.1■□□□□ 0.81
SHMT2-217ENST00000555116 CCDC61Q9Y6R9 512 aa20.1■□□□□ 0.81
SHMT2-217ENST00000555116 USP47Q96K76 1375 aa20.1■□□□□ 0.81
SHMT2-217ENST00000555116 TRPM3Q9HCF6 1732 aaPredicted RBP20.09■□□□□ 0.81
SHMT2-217ENST00000555116 SPATA31A6Q5VVP1 1343 aa20.09■□□□□ 0.81
SHMT2-217ENST00000555116 COL22A1Q8NFW1 1626 aaPredicted RBP20.09■□□□□ 0.81
SHMT2-217ENST00000555116 ST20-MTHFSA0A0A6YYL1 179 aa20.08■□□□□ 0.81
SHMT2-217ENST00000555116 TESK2Q96S53 571 aa20.07■□□□□ 0.8
SHMT2-217ENST00000555116 LRP6O75581 1613 aa20.07■□□□□ 0.8
SHMT2-217ENST00000555116 PLEKHG3A1L390 1219 aa20.07■□□□□ 0.8
SHMT2-217ENST00000555116 PSME1Q06323 249 aa20.07■□□□□ 0.8
SHMT2-217ENST00000555116 SPATA31A3Q5VYP0 1347 aa20.06■□□□□ 0.8
SHMT2-217ENST00000555116 PPIP5K1Q6PFW1 1433 aa20.06■□□□□ 0.8
SHMT2-217ENST00000555116 SBNO1A3KN83 1393 aa20.06■□□□□ 0.8
SHMT2-217ENST00000555116 POLR3AO14802 1390 aaPredicted RBP20.06■□□□□ 0.8
SHMT2-217ENST00000555116 NGDNQ8NEJ9 315 aaKnown RBP20.05■□□□□ 0.8
SHMT2-217ENST00000555116 DISP3Q9P2K9 1392 aa20.04■□□□□ 0.8
SHMT2-217ENST00000555116 ALS2Q96Q42 1657 aa20.04■□□□□ 0.8
SHMT2-217ENST00000555116 ACEP12821 1306 aa20.04■□□□□ 0.8
SHMT2-217ENST00000555116 TNS3Q68CZ2 1445 aa20.04■□□□□ 0.8
SHMT2-217ENST00000555116 ATAD2Q6PL18 1390 aa20.01■□□□□ 0.79
SHMT2-217ENST00000555116 NUTM2BA6NNL0 878 aaPredicted RBP20.01■□□□□ 0.79
SHMT2-217ENST00000555116 NUTM2EB1AL46 878 aaPredicted RBP20.01■□□□□ 0.79
SHMT2-217ENST00000555116 NUTM2AQ8IVF1 878 aaPredicted RBP20.01■□□□□ 0.79
SHMT2-217ENST00000555116 CABP1Q9NZU7 370 aa20.01■□□□□ 0.79
SHMT2-217ENST00000555116 AKAP12Q02952 1782 aa20.01■□□□□ 0.79
SHMT2-217ENST00000555116 SLC24A1O60721 1099 aa19.99■□□□□ 0.79
SHMT2-217ENST00000555116 PUS7Q96PZ0 661 aaKnown RBP19.99■□□□□ 0.79
SHMT2-217ENST00000555116 ABCA3Q99758 1704 aa19.98■□□□□ 0.79
SHMT2-217ENST00000555116 MARF1Q9Y4F3 1742 aaKnown RBP19.98■□□□□ 0.79
SHMT2-217ENST00000555116 ARHGEF10O15013 1369 aa19.98■□□□□ 0.79
SHMT2-217ENST00000555116 PHF23Q9BUL5 403 aaPredicted RBP19.96■□□□□ 0.79
SHMT2-217ENST00000555116 CRYBG1Q9Y4K1 1723 aa19.95■□□□□ 0.78
SHMT2-217ENST00000555116 ZEB1P37275 1124 aaPredicted RBP19.95■□□□□ 0.78
SHMT2-217ENST00000555116 MEX3CQ5U5Q3 659 aaKnown RBP19.94■□□□□ 0.78
SHMT2-217ENST00000555116 LMOD2Q6P5Q4 547 aa19.94■□□□□ 0.78
SHMT2-217ENST00000555116 RGS17Q9UGC6 210 aaPredicted RBP19.94■□□□□ 0.78
SHMT2-217ENST00000555116 USP6P35125 1406 aa19.94■□□□□ 0.78
SHMT2-217ENST00000555116 MON2Q7Z3U7 1717 aa19.94■□□□□ 0.78
SHMT2-217ENST00000555116 CPSF1Q10570 1443 aaKnown RBP19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms