RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 CLTCL1P53675 1640 aa16.48■□□□□ 0.23
SHMT2-216ENST00000554975 GLI3P10071 1580 aa16.48■□□□□ 0.23
SHMT2-216ENST00000554975 LRP5O75197 1615 aa16.48■□□□□ 0.23
SHMT2-216ENST00000554975 NUP155O75694 1391 aa16.47■□□□□ 0.23
SHMT2-216ENST00000554975 ROBO2Q9HCK4 1378 aa16.47■□□□□ 0.23
SHMT2-216ENST00000554975 FOXD1Q16676 465 aa16.46■□□□□ 0.23
SHMT2-216ENST00000554975 ZNF326Q5BKZ1 582 aaKnown RBP16.46■□□□□ 0.23
SHMT2-216ENST00000554975 KIF1BO60333 1816 aa16.45■□□□□ 0.22
SHMT2-216ENST00000554975 DEFB132Q7Z7B7 95 aa16.45■□□□□ 0.22
SHMT2-216ENST00000554975 CCDC125Q86Z20 511 aa16.45■□□□□ 0.22
SHMT2-216ENST00000554975 PXDNQ92626 1479 aa16.44■□□□□ 0.22
SHMT2-216ENST00000554975 CCER1Q8TC90 406 aaPredicted RBP16.44■□□□□ 0.22
SHMT2-216ENST00000554975 GJD4Q96KN9 370 aaPredicted RBP16.43■□□□□ 0.22
SHMT2-216ENST00000554975 BLMP54132 1417 aaPredicted RBP16.43■□□□□ 0.22
SHMT2-216ENST00000554975 ROCK1Q13464 1354 aa16.42■□□□□ 0.22
SHMT2-216ENST00000554975 RALGAPBQ86X10 1494 aa16.42■□□□□ 0.22
SHMT2-216ENST00000554975 XPCQ01831 940 aaPredicted RBP16.41■□□□□ 0.22
SHMT2-216ENST00000554975 PRAG1Q86YV5 1406 aa16.39■□□□□ 0.21
SHMT2-216ENST00000554975 SLIT2O94813 1529 aa16.39■□□□□ 0.21
SHMT2-216ENST00000554975 CDC42BPGQ6DT37 1551 aa16.38■□□□□ 0.21
SHMT2-216ENST00000554975 USP32Q8NFA0 1604 aa16.37■□□□□ 0.21
SHMT2-216ENST00000554975 PLCH1Q4KWH8 1693 aa16.37■□□□□ 0.21
SHMT2-216ENST00000554975 RRBP1Q9P2E9 1410 aaKnown RBP16.36■□□□□ 0.21
SHMT2-216ENST00000554975 PPLO60437 1756 aa16.36■□□□□ 0.21
SHMT2-216ENST00000554975 ESCO1Q5FWF5 840 aa16.36■□□□□ 0.21
SHMT2-216ENST00000554975 NPHP3Q7Z494 1330 aa16.36■□□□□ 0.21
SHMT2-216ENST00000554975 FOXO3O43524 673 aa16.35■□□□□ 0.21
SHMT2-216ENST00000554975 UNC5CLQ8IV45 518 aa16.35■□□□□ 0.21
SHMT2-216ENST00000554975 RGPD8O14715 1765 aaPredicted RBP16.34■□□□□ 0.21
SHMT2-216ENST00000554975 PSDA5PKW4 1024 aaPredicted RBP16.34■□□□□ 0.21
SHMT2-216ENST00000554975 HFM1A2PYH4 1435 aa16.34■□□□□ 0.21
SHMT2-216ENST00000554975 ABCA3Q99758 1704 aa16.33■□□□□ 0.21
SHMT2-216ENST00000554975 ITGAEP38570 1179 aa16.33■□□□□ 0.2
SHMT2-216ENST00000554975 FMN2Q9NZ56 1722 aa16.31■□□□□ 0.2
SHMT2-216ENST00000554975 NWD2Q9ULI1 1742 aa16.31■□□□□ 0.2
SHMT2-216ENST00000554975 NUTM2FA1L443 756 aa16.31■□□□□ 0.2
SHMT2-216ENST00000554975 SEPT12Q8IYM1 358 aa16.31■□□□□ 0.2
SHMT2-216ENST00000554975 NAIPQ13075 1403 aa16.29■□□□□ 0.2
SHMT2-216ENST00000554975 KIF1AQ12756 1690 aa16.28■□□□□ 0.2
SHMT2-216ENST00000554975 SPATA31A3Q5VYP0 1347 aa16.28■□□□□ 0.2
SHMT2-216ENST00000554975 CLSPNQ9HAW4 1339 aa16.28■□□□□ 0.2
SHMT2-216ENST00000554975 SF3B2Q13435 895 aaKnown RBP16.28■□□□□ 0.2
SHMT2-216ENST00000554975 NRAPQ86VF7 1730 aa16.27■□□□□ 0.19
SHMT2-216ENST00000554975 KNDC1Q76NI1 1749 aa16.26■□□□□ 0.19
SHMT2-216ENST00000554975 IFT172Q9UG01 1749 aa16.26■□□□□ 0.19
SHMT2-216ENST00000554975 VGFO15240 615 aaPredicted RBP16.26■□□□□ 0.19
SHMT2-216ENST00000554975 WAPLQ7Z5K2 1190 aa16.26■□□□□ 0.19
SHMT2-216ENST00000554975 RGPD1P0DJD0 1748 aa16.25■□□□□ 0.19
SHMT2-216ENST00000554975 TNS1Q9HBL0 1735 aaKnown RBP16.25■□□□□ 0.19
SHMT2-216ENST00000554975 VPS72Q15906 364 aa16.25■□□□□ 0.19
SHMT2-216ENST00000554975 CABLES1Q8TDN4 633 aa16.25■□□□□ 0.19
SHMT2-216ENST00000554975 PLEKHH1Q9ULM0 1364 aa16.25■□□□□ 0.19
SHMT2-216ENST00000554975 ONECUT3O60422 494 aaPredicted RBP16.24■□□□□ 0.19
SHMT2-216ENST00000554975 KRT27Q7Z3Y8 459 aa16.24■□□□□ 0.19
SHMT2-216ENST00000554975 LRPPRCP42704 1394 aaKnown RBP16.24■□□□□ 0.19
SHMT2-216ENST00000554975 PLEKHG5O94827 1062 aa16.23■□□□□ 0.19
SHMT2-216ENST00000554975 TECPR2O15040 1411 aa16.22■□□□□ 0.19
SHMT2-216ENST00000554975 CCDC9Q9Y3X0 531 aaKnown RBP16.22■□□□□ 0.19
SHMT2-216ENST00000554975 CCDC144AA2RUR9 1427 aa16.21■□□□□ 0.19
SHMT2-216ENST00000554975 TNS3Q68CZ2 1445 aa16.21■□□□□ 0.19
SHMT2-216ENST00000554975 BAG6P46379 1132 aa16.21■□□□□ 0.19
SHMT2-216ENST00000554975 EN1Q05925 392 aaPredicted RBP16.21■□□□□ 0.19
SHMT2-216ENST00000554975 KRT28Q7Z3Y7 464 aa16.21■□□□□ 0.19
SHMT2-216ENST00000554975 STK26Q9P289 416 aa16.21■□□□□ 0.19
SHMT2-216ENST00000554975 R3HDM1Q15032 1099 aaKnown RBP16.2■□□□□ 0.18
SHMT2-216ENST00000554975 RPGRIP1LQ68CZ1 1315 aa16.19■□□□□ 0.18
SHMT2-216ENST00000554975 ADGRF5Q8IZF2 1346 aa16.19■□□□□ 0.18
SHMT2-216ENST00000554975 FAM182BQ5T319 152 aa16.19■□□□□ 0.18
SHMT2-216ENST00000554975 FAM98CQ17RN3 349 aaKnown RBP16.17■□□□□ 0.18
SHMT2-216ENST00000554975 THSD7AQ9UPZ6 1657 aa16.16■□□□□ 0.18
SHMT2-216ENST00000554975 A0A0G2JS52 829 aa16.16■□□□□ 0.18
SHMT2-216ENST00000554975 FAM83GA6ND36 823 aa16.16■□□□□ 0.18
SHMT2-216ENST00000554975 HAP1P54257 671 aaPredicted RBP16.16■□□□□ 0.18
SHMT2-216ENST00000554975 MYT1Q01538 1121 aa16.16■□□□□ 0.18
SHMT2-216ENST00000554975 TMEM132EQ6IEE7 984 aa16.16■□□□□ 0.18
SHMT2-216ENST00000554975 TRPM3Q9HCF6 1732 aaPredicted RBP16.16■□□□□ 0.18
SHMT2-216ENST00000554975 ABCC11Q96J66 1382 aa16.14■□□□□ 0.17
SHMT2-216ENST00000554975 NRXN1Q9ULB1 1477 aa16.14■□□□□ 0.17
SHMT2-216ENST00000554975 CRYBG1Q9Y4K1 1723 aa16.14■□□□□ 0.17
SHMT2-216ENST00000554975 COL14A1Q05707 1796 aaKnown RBP16.13■□□□□ 0.17
SHMT2-216ENST00000554975 DISP2A7MBM2 1401 aa16.13■□□□□ 0.17
SHMT2-216ENST00000554975 PHF8Q9UPP1 1060 aa16.13■□□□□ 0.17
SHMT2-216ENST00000554975 ALS2Q96Q42 1657 aa16.13■□□□□ 0.17
SHMT2-216ENST00000554975 SBNO1A3KN83 1393 aa16.13■□□□□ 0.17
SHMT2-216ENST00000554975 RREB1Q92766 1687 aa16.12■□□□□ 0.17
SHMT2-216ENST00000554975 EZH2Q15910 746 aaKnown RBP16.12■□□□□ 0.17
SHMT2-216ENST00000554975 LMOD2Q6P5Q4 547 aa16.12■□□□□ 0.17
SHMT2-216ENST00000554975 YTHDC2Q9H6S0 1430 aaKnown RBP16.11■□□□□ 0.17
SHMT2-216ENST00000554975 NUP188Q5SRE5 1749 aa16.11■□□□□ 0.17
SHMT2-216ENST00000554975 YY1P25490 414 aa16.1■□□□□ 0.17
SHMT2-216ENST00000554975 BTG4Q9NY30 223 aa16.1■□□□□ 0.17
SHMT2-216ENST00000554975 ARHGEF10O15013 1369 aa16.09■□□□□ 0.17
SHMT2-216ENST00000554975 PIK3C2GO75747 1445 aa16.09■□□□□ 0.17
SHMT2-216ENST00000554975 SPATA31E1Q6ZUB1 1445 aa16.09■□□□□ 0.17
SHMT2-216ENST00000554975 ADGRB2O60241 1585 aa16.09■□□□□ 0.17
SHMT2-216ENST00000554975 PSME1Q06323 249 aa16.08■□□□□ 0.16
SHMT2-216ENST00000554975 RGL3Q3MIN7 710 aa16.07■□□□□ 0.16
SHMT2-216ENST00000554975 CAMKK2Q96RR4 588 aa16.07■□□□□ 0.16
SHMT2-216ENST00000554975 SPATA31A5Q5VU36 1347 aa16.07■□□□□ 0.16
SHMT2-216ENST00000554975 SPATA31A7Q8IWB4 1347 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms