RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 RNF17Q9BXT8 1623 aaKnown RBP12.14□□□□□ -0.47
SYNE2-213ENST00000554805 MYH16Q9H6N6 1097 aa12.14□□□□□ -0.47
SYNE2-213ENST00000554805 ANO8Q9HCE9 1232 aaPredicted RBP12.14□□□□□ -0.47
SYNE2-213ENST00000554805 NOS1P29475 1434 aa12.14□□□□□ -0.47
SYNE2-213ENST00000554805 UGGT1Q9NYU2 1555 aa12.14□□□□□ -0.47
SYNE2-213ENST00000554805 PDZRN3Q9UPQ7 1066 aa12.14□□□□□ -0.47
SYNE2-213ENST00000554805 FANCAO15360 1455 aa12.13□□□□□ -0.47
SYNE2-213ENST00000554805 RLBP1P12271 317 aa12.13□□□□□ -0.47
SYNE2-213ENST00000554805 PCDHB15Q9Y5E8 787 aa12.13□□□□□ -0.47
SYNE2-213ENST00000554805 ASXL2Q76L83 1435 aa12.13□□□□□ -0.47
SYNE2-213ENST00000554805 POLR3AO14802 1390 aaPredicted RBP12.13□□□□□ -0.47
SYNE2-213ENST00000554805 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.13□□□□□ -0.47
SYNE2-213ENST00000554805 CABP2Q9NPB3 220 aa12.12□□□□□ -0.47
SYNE2-213ENST00000554805 ADGRL1O94910 1474 aa12.12□□□□□ -0.47
SYNE2-213ENST00000554805 IQGAP1P46940 1657 aa12.12□□□□□ -0.47
SYNE2-213ENST00000554805 SRPK2P78362 688 aaKnown RBP12.12□□□□□ -0.47
SYNE2-213ENST00000554805 WDR63Q8IWG1 891 aa12.12□□□□□ -0.47
SYNE2-213ENST00000554805 SMC4Q9NTJ3 1288 aa12.12□□□□□ -0.47
SYNE2-213ENST00000554805 TSR2Q969E8 191 aaKnown RBP12.11□□□□□ -0.47
SYNE2-213ENST00000554805 ZCCHC11Q5TAX3 1644 aaKnown RBP12.11□□□□□ -0.47
SYNE2-213ENST00000554805 NINLQ9Y2I6 1382 aa12.11□□□□□ -0.47
SYNE2-213ENST00000554805 KDM5AP29375 1690 aaKnown RBP12.1□□□□□ -0.47
SYNE2-213ENST00000554805 ZKSCAN2Q63HK3 967 aa12.1□□□□□ -0.47
SYNE2-213ENST00000554805 EVC2Q86UK5 1308 aa12.1□□□□□ -0.47
SYNE2-213ENST00000554805 ZFYVE16Q7Z3T8 1539 aa12.1□□□□□ -0.47
SYNE2-213ENST00000554805 NEURL4Q96JN8 1562 aa12.1□□□□□ -0.47
SYNE2-213ENST00000554805 ITPRIPQ8IWB1 547 aa12.1□□□□□ -0.47
SYNE2-213ENST00000554805 C14orf93Q9H972 538 aaKnown RBP12.1□□□□□ -0.47
SYNE2-213ENST00000554805 ATP7AQ04656 1500 aa12.09□□□□□ -0.47
SYNE2-213ENST00000554805 CLASP1Q7Z460 1538 aa12.09□□□□□ -0.47
SYNE2-213ENST00000554805 DZIP1LQ8IYY4 767 aaKnown RBP12.09□□□□□ -0.47
SYNE2-213ENST00000554805 GGNBP2Q9H3C7 697 aa12.09□□□□□ -0.47
SYNE2-213ENST00000554805 MFAP1P55081 439 aaKnown RBP12.09□□□□□ -0.47
SYNE2-213ENST00000554805 SPHKAPQ2M3C7 1700 aa12.08□□□□□ -0.47
SYNE2-213ENST00000554805 USP19O94966 1318 aa12.08□□□□□ -0.48
SYNE2-213ENST00000554805 EXOSC9Q06265 439 aaKnown RBP12.07□□□□□ -0.48
SYNE2-213ENST00000554805 POGKQ9P215 609 aa12.07□□□□□ -0.48
SYNE2-213ENST00000554805 CD109Q6YHK3 1445 aa12.07□□□□□ -0.48
SYNE2-213ENST00000554805 MVPQ14764 893 aaKnown RBP12.07□□□□□ -0.48
SYNE2-213ENST00000554805 EIF5BO60841 1220 aaKnown RBP12.06□□□□□ -0.48
SYNE2-213ENST00000554805 SHROOM2Q13796 1616 aa12.06□□□□□ -0.48
SYNE2-213ENST00000554805 AAMPQ13685 434 aa12.06□□□□□ -0.48
SYNE2-213ENST00000554805 TET3O43151 1660 aa12.06□□□□□ -0.48
SYNE2-213ENST00000554805 UHRF1BP1LA0JNW5 1464 aa12.06□□□□□ -0.48
SYNE2-213ENST00000554805 VGFO15240 615 aaPredicted RBP12.06□□□□□ -0.48
SYNE2-213ENST00000554805 CEP152O94986 1710 aa12.05□□□□□ -0.48
SYNE2-213ENST00000554805 MINK1Q8N4C8 1332 aaPredicted RBP12.05□□□□□ -0.48
SYNE2-213ENST00000554805 MYOM2P54296 1465 aa12.05□□□□□ -0.48
SYNE2-213ENST00000554805 STAG3Q9UJ98 1225 aa12.05□□□□□ -0.48
SYNE2-213ENST00000554805 GZF1Q9H116 711 aaPredicted RBP12.04□□□□□ -0.48
SYNE2-213ENST00000554805 MAP3K4Q9Y6R4 1608 aa12.04□□□□□ -0.48
SYNE2-213ENST00000554805 TBC1D2Q9BYX2 928 aa12.04□□□□□ -0.48
SYNE2-213ENST00000554805 ABCA6Q8N139 1617 aa12.04□□□□□ -0.48
SYNE2-213ENST00000554805 MYOM1P52179 1685 aa12.03□□□□□ -0.48
SYNE2-213ENST00000554805 SBNO2Q9Y2G9 1366 aa12.03□□□□□ -0.48
SYNE2-213ENST00000554805 RIPK4P57078 832 aa12.03□□□□□ -0.48
SYNE2-213ENST00000554805 TBC1D32Q96NH3 1257 aa12.03□□□□□ -0.48
SYNE2-213ENST00000554805 CCDC27Q2M243 656 aa12.03□□□□□ -0.48
SYNE2-213ENST00000554805 SSH1Q8WYL5 1049 aa12.03□□□□□ -0.48
SYNE2-213ENST00000554805 CFAP65Q6ZU64 1925 aaKnown RBP12.03□□□□□ -0.48
SYNE2-213ENST00000554805 TMPOP42166 694 aaKnown RBP12.02□□□□□ -0.48
SYNE2-213ENST00000554805 C22orf23Q9BZE7 217 aa12.02□□□□□ -0.48
SYNE2-213ENST00000554805 NOB1Q9ULX3 412 aaKnown RBP12.02□□□□□ -0.48
SYNE2-213ENST00000554805 DDX19BQ9UMR2 479 aa12.02□□□□□ -0.49
SYNE2-213ENST00000554805 RPGRIP1LQ68CZ1 1315 aa12.01□□□□□ -0.49
SYNE2-213ENST00000554805 ESF1Q9H501 851 aaKnown RBP12.01□□□□□ -0.49
SYNE2-213ENST00000554805 TRIM27P14373 513 aa12.01□□□□□ -0.49
SYNE2-213ENST00000554805 TERF2IPQ9NYB0 399 aa12.01□□□□□ -0.49
SYNE2-213ENST00000554805 PHF23Q9BUL5 403 aaPredicted RBP12.01□□□□□ -0.49
SYNE2-213ENST00000554805 ATF7IPQ6VMQ6 1270 aa12□□□□□ -0.49
SYNE2-213ENST00000554805 IPO8O15397 1037 aaKnown RBP12□□□□□ -0.49
SYNE2-213ENST00000554805 HSCBQ8IWL3 235 aa12□□□□□ -0.49
SYNE2-213ENST00000554805 DIAPH1O60610 1272 aaKnown RBP11.99□□□□□ -0.49
SYNE2-213ENST00000554805 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.99□□□□□ -0.49
SYNE2-213ENST00000554805 TMEM57Q8N5G2 664 aa11.99□□□□□ -0.49
SYNE2-213ENST00000554805 L1TD1Q5T7N2 865 aaKnown RBP11.99□□□□□ -0.49
SYNE2-213ENST00000554805 HDGFL2Q7Z4V5 671 aaPredicted RBP11.99□□□□□ -0.49
SYNE2-213ENST00000554805 LNPKQ9C0E8 428 aa11.99□□□□□ -0.49
SYNE2-213ENST00000554805 ANKRD36BQ8N2N9 1353 aa11.99□□□□□ -0.49
SYNE2-213ENST00000554805 NPATQ14207 1427 aa11.99□□□□□ -0.49
SYNE2-213ENST00000554805 KIF1BO60333 1816 aa11.98□□□□□ -0.49
SYNE2-213ENST00000554805 ZNF518AQ6AHZ1 1483 aa11.98□□□□□ -0.49
SYNE2-213ENST00000554805 HSP90AA1P07900 732 aaKnown RBP11.98□□□□□ -0.49
SYNE2-213ENST00000554805 IDI1Q13907 227 aa11.98□□□□□ -0.49
SYNE2-213ENST00000554805 PRAM1Q96QH2 718 aa11.98□□□□□ -0.49
SYNE2-213ENST00000554805 EFCAB6Q5THR3 1501 aa11.98□□□□□ -0.49
SYNE2-213ENST00000554805 ARAP3Q8WWN8 1544 aa11.98□□□□□ -0.49
SYNE2-213ENST00000554805 ELL2O00472 640 aaPredicted RBP11.98□□□□□ -0.49
SYNE2-213ENST00000554805 KIAA1210Q9ULL0 1709 aa11.97□□□□□ -0.49
SYNE2-213ENST00000554805 CT47B1P0C2W7 299 aaPredicted RBP11.97□□□□□ -0.49
SYNE2-213ENST00000554805 PNNQ9H307 717 aaKnown RBP11.97□□□□□ -0.49
SYNE2-213ENST00000554805 DEPDC5O75140 1603 aa11.97□□□□□ -0.49
SYNE2-213ENST00000554805 VWDEQ8N2E2 1590 aa11.97□□□□□ -0.49
SYNE2-213ENST00000554805 TRIM35Q9UPQ4 493 aa11.96□□□□□ -0.49
SYNE2-213ENST00000554805 FBLN1P23142 703 aa11.96□□□□□ -0.49
SYNE2-213ENST00000554805 CHMP5Q9NZZ3 219 aa11.96□□□□□ -0.49
SYNE2-213ENST00000554805 INO80Q9ULG1 1556 aaPredicted RBP11.96□□□□□ -0.49
SYNE2-213ENST00000554805 FYB1O15117 783 aa11.96□□□□□ -0.5
SYNE2-213ENST00000554805 NSD2O96028 1365 aa11.96□□□□□ -0.5
SYNE2-213ENST00000554805 GOLGA6L3A6NEY3 463 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms