RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 PCGF6Q9BYE7 350 aa20.68■□□□□ 0.9
CCDC88C-207ENST00000554051 TRPM1Q7Z4N2 1603 aa20.67■□□□□ 0.9
CCDC88C-207ENST00000554051 NEUROD1Q13562 356 aa20.67■□□□□ 0.9
CCDC88C-207ENST00000554051 SIN3AQ96ST3 1273 aa20.67■□□□□ 0.9
CCDC88C-207ENST00000554051 FMN2Q9NZ56 1722 aa20.67■□□□□ 0.9
CCDC88C-207ENST00000554051 EIF3AQ14152 1382 aaKnown RBP20.66■□□□□ 0.9
CCDC88C-207ENST00000554051 C1orf167Q5SNV9 1468 aa20.66■□□□□ 0.9
CCDC88C-207ENST00000554051 NHSL1Q5SYE7 1610 aa20.66■□□□□ 0.9
CCDC88C-207ENST00000554051 POGKQ9P215 609 aa20.64■□□□□ 0.89
CCDC88C-207ENST00000554051 KIF1AQ12756 1690 aa20.64■□□□□ 0.89
CCDC88C-207ENST00000554051 COL16A1Q07092 1604 aaPredicted RBP20.64■□□□□ 0.89
CCDC88C-207ENST00000554051 PLEKHH1Q9ULM0 1364 aa20.63■□□□□ 0.89
CCDC88C-207ENST00000554051 PRAM1Q96QH2 718 aa20.62■□□□□ 0.89
CCDC88C-207ENST00000554051 BRINP3Q76B58 766 aa20.61■□□□□ 0.89
CCDC88C-207ENST00000554051 WAPLQ7Z5K2 1190 aa20.61■□□□□ 0.89
CCDC88C-207ENST00000554051 ANKARQ7Z5J8 1434 aa20.61■□□□□ 0.89
CCDC88C-207ENST00000554051 TRAK1Q9UPV9 953 aa20.6■□□□□ 0.89
CCDC88C-207ENST00000554051 RALGAPBQ86X10 1494 aa20.58■□□□□ 0.89
CCDC88C-207ENST00000554051 ROCK2O75116 1388 aaKnown RBP20.58■□□□□ 0.88
CCDC88C-207ENST00000554051 SHPRHQ149N8 1683 aa20.57■□□□□ 0.88
CCDC88C-207ENST00000554051 TULP4Q9NRJ4 1543 aa20.57■□□□□ 0.88
CCDC88C-207ENST00000554051 GPRASP1Q5JY77 1395 aa20.57■□□□□ 0.88
CCDC88C-207ENST00000554051 JCADQ9P266 1359 aa20.57■□□□□ 0.88
CCDC88C-207ENST00000554051 MED1Q15648 1581 aaPredicted RBP20.56■□□□□ 0.88
CCDC88C-207ENST00000554051 TIMELESSQ9UNS1 1208 aa20.56■□□□□ 0.88
CCDC88C-207ENST00000554051 ITSN1Q15811 1721 aa20.54■□□□□ 0.88
CCDC88C-207ENST00000554051 QRICH2Q9H0J4 1663 aa20.53■□□□□ 0.88
CCDC88C-207ENST00000554051 NPHP3Q7Z494 1330 aa20.53■□□□□ 0.88
CCDC88C-207ENST00000554051 SAFB2Q14151 953 aaKnown RBP eCLIP20.52■□□□□ 0.88
CCDC88C-207ENST00000554051 NBPF1Q3BBV0 1214 aa20.51■□□□□ 0.87
CCDC88C-207ENST00000554051 CENPJQ9HC77 1338 aaPredicted RBP20.51■□□□□ 0.87
CCDC88C-207ENST00000554051 SPATA31A6Q5VVP1 1343 aa20.5■□□□□ 0.87
CCDC88C-207ENST00000554051 MINK1Q8N4C8 1332 aaPredicted RBP20.5■□□□□ 0.87
CCDC88C-207ENST00000554051 USP32Q8NFA0 1604 aa20.49■□□□□ 0.87
CCDC88C-207ENST00000554051 ESCO1Q5FWF5 840 aa20.49■□□□□ 0.87
CCDC88C-207ENST00000554051 LRRC59Q96AG4 307 aaKnown RBP20.48■□□□□ 0.87
CCDC88C-207ENST00000554051 WASLO00401 505 aaPredicted RBP20.47■□□□□ 0.87
CCDC88C-207ENST00000554051 CCER1Q8TC90 406 aaPredicted RBP20.47■□□□□ 0.87
CCDC88C-207ENST00000554051 ORAI2Q96SN7 254 aa20.47■□□□□ 0.87
CCDC88C-207ENST00000554051 PXDNQ92626 1479 aa20.47■□□□□ 0.87
CCDC88C-207ENST00000554051 SOS2Q07890 1332 aaPredicted RBP20.47■□□□□ 0.87
CCDC88C-207ENST00000554051 TOPAZ1Q8N9V7 1692 aa20.46■□□□□ 0.87
CCDC88C-207ENST00000554051 SBNO2Q9Y2G9 1366 aa20.46■□□□□ 0.87
CCDC88C-207ENST00000554051 ATP7BP35670 1465 aa20.45■□□□□ 0.86
CCDC88C-207ENST00000554051 RGPD8O14715 1765 aaPredicted RBP20.45■□□□□ 0.86
CCDC88C-207ENST00000554051 DISP3Q9P2K9 1392 aa20.45■□□□□ 0.86
CCDC88C-207ENST00000554051 NBPF8Q3BBV2 869 aa20.44■□□□□ 0.86
CCDC88C-207ENST00000554051 HIRIP3Q9BW71 556 aaPredicted RBP20.44■□□□□ 0.86
CCDC88C-207ENST00000554051 COL22A1Q8NFW1 1626 aaPredicted RBP20.44■□□□□ 0.86
CCDC88C-207ENST00000554051 CARD11Q9BXL7 1154 aa20.43■□□□□ 0.86
CCDC88C-207ENST00000554051 PHF8Q9UPP1 1060 aa20.43■□□□□ 0.86
CCDC88C-207ENST00000554051 PNPLA6Q8IY17 1366 aa20.42■□□□□ 0.86
CCDC88C-207ENST00000554051 NUTM2FA1L443 756 aa20.41■□□□□ 0.86
CCDC88C-207ENST00000554051 EVC2Q86UK5 1308 aa20.39■□□□□ 0.85
CCDC88C-207ENST00000554051 PSME1Q06323 249 aa20.39■□□□□ 0.85
CCDC88C-207ENST00000554051 PHF23Q9BUL5 403 aaPredicted RBP20.39■□□□□ 0.85
CCDC88C-207ENST00000554051 SBNO1A3KN83 1393 aa20.38■□□□□ 0.85
CCDC88C-207ENST00000554051 FOXO3O43524 673 aa20.38■□□□□ 0.85
CCDC88C-207ENST00000554051 SLC24A1O60721 1099 aa20.38■□□□□ 0.85
CCDC88C-207ENST00000554051 TNS3Q68CZ2 1445 aa20.37■□□□□ 0.85
CCDC88C-207ENST00000554051 PRR36Q9H6K5 1346 aa20.37■□□□□ 0.85
CCDC88C-207ENST00000554051 CDK19Q9BWU1 502 aa20.37■□□□□ 0.85
CCDC88C-207ENST00000554051 ARHGEF10O15013 1369 aa20.36■□□□□ 0.85
CCDC88C-207ENST00000554051 DDX17Q92841 729 aaKnown RBP20.36■□□□□ 0.85
CCDC88C-207ENST00000554051 LRP6O75581 1613 aa20.35■□□□□ 0.85
CCDC88C-207ENST00000554051 SRPK2P78362 688 aaKnown RBP20.35■□□□□ 0.85
CCDC88C-207ENST00000554051 NUDT16Q96DE0 195 aaKnown RBP20.35■□□□□ 0.85
CCDC88C-207ENST00000554051 ATAD2Q6PL18 1390 aa20.34■□□□□ 0.85
CCDC88C-207ENST00000554051 TRPM3Q9HCF6 1732 aaPredicted RBP20.34■□□□□ 0.85
CCDC88C-207ENST00000554051 CCDC61Q9Y6R9 512 aa20.34■□□□□ 0.85
CCDC88C-207ENST00000554051 POLR3AO14802 1390 aaPredicted RBP20.34■□□□□ 0.85
CCDC88C-207ENST00000554051 SPATA31A3Q5VYP0 1347 aa20.32■□□□□ 0.84
CCDC88C-207ENST00000554051 MEX3CQ5U5Q3 659 aaKnown RBP20.32■□□□□ 0.84
CCDC88C-207ENST00000554051 KRT28Q7Z3Y7 464 aa20.32■□□□□ 0.84
CCDC88C-207ENST00000554051 BRD4O60885 1362 aaPredicted RBP20.32■□□□□ 0.84
CCDC88C-207ENST00000554051 PPIP5K1Q6PFW1 1433 aa20.31■□□□□ 0.84
CCDC88C-207ENST00000554051 NGDNQ8NEJ9 315 aaKnown RBP20.31■□□□□ 0.84
CCDC88C-207ENST00000554051 ALS2Q96Q42 1657 aa20.3■□□□□ 0.84
CCDC88C-207ENST00000554051 PLEKHG3A1L390 1219 aa20.29■□□□□ 0.84
CCDC88C-207ENST00000554051 PMFBP1Q8TBY8 1022 aa20.29■□□□□ 0.84
CCDC88C-207ENST00000554051 USP47Q96K76 1375 aa20.29■□□□□ 0.84
CCDC88C-207ENST00000554051 MARF1Q9Y4F3 1742 aaKnown RBP20.28■□□□□ 0.84
CCDC88C-207ENST00000554051 XPCQ01831 940 aaPredicted RBP20.28■□□□□ 0.84
CCDC88C-207ENST00000554051 ABCA3Q99758 1704 aa20.27■□□□□ 0.84
CCDC88C-207ENST00000554051 PUS7Q96PZ0 661 aaKnown RBP20.26■□□□□ 0.83
CCDC88C-207ENST00000554051 NINLQ9Y2I6 1382 aa20.25■□□□□ 0.83
CCDC88C-207ENST00000554051 NUTM2BA6NNL0 878 aaPredicted RBP20.25■□□□□ 0.83
CCDC88C-207ENST00000554051 NUTM2EB1AL46 878 aaPredicted RBP20.25■□□□□ 0.83
CCDC88C-207ENST00000554051 NUTM2AQ8IVF1 878 aaPredicted RBP20.25■□□□□ 0.83
CCDC88C-207ENST00000554051 CABP2Q9NPB3 220 aa20.25■□□□□ 0.83
CCDC88C-207ENST00000554051 ACEP12821 1306 aa20.24■□□□□ 0.83
CCDC88C-207ENST00000554051 ZNF772Q68DY9 489 aaPredicted RBP20.23■□□□□ 0.83
CCDC88C-207ENST00000554051 AKAP12Q02952 1782 aa20.22■□□□□ 0.83
CCDC88C-207ENST00000554051 USP6P35125 1406 aa20.21■□□□□ 0.83
CCDC88C-207ENST00000554051 CRYBG1Q9Y4K1 1723 aa20.2■□□□□ 0.82
CCDC88C-207ENST00000554051 ST20-MTHFSA0A0A6YYL1 179 aa20.2■□□□□ 0.82
CCDC88C-207ENST00000554051 HAP1P54257 671 aaPredicted RBP20.19■□□□□ 0.82
CCDC88C-207ENST00000554051 CDCA8Q53HL2 280 aa20.19■□□□□ 0.82
CCDC88C-207ENST00000554051 LMOD2Q6P5Q4 547 aa20.19■□□□□ 0.82
CCDC88C-207ENST00000554051 TESK2Q96S53 571 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms