RNA–Protein interactions for RNA: ENST00000553609.5

NEDD1-205, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 3

Gene NEDD1, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-205ENST00000553609 EP400Q96L91 3159 aa21.56■■□□□ 1.04
NEDD1-205ENST00000553609 FNBP4Q8N3X1 1017 aaPredicted RBP21.56■■□□□ 1.04
NEDD1-205ENST00000553609 CDC42BPGQ6DT37 1551 aa21.56■■□□□ 1.04
NEDD1-205ENST00000553609 ATRNO75882 1429 aa21.55■■□□□ 1.04
NEDD1-205ENST00000553609 PXDNQ92626 1479 aa21.55■■□□□ 1.04
NEDD1-205ENST00000553609 USP21Q9UK80 565 aa21.53■■□□□ 1.04
NEDD1-205ENST00000553609 ATAD2Q6PL18 1390 aa21.51■■□□□ 1.03
NEDD1-205ENST00000553609 TRPC5Q9UL62 973 aaPredicted RBP21.51■■□□□ 1.03
NEDD1-205ENST00000553609 BCL9LQ86UU0 1499 aa21.5■■□□□ 1.03
NEDD1-205ENST00000553609 TECPR2O15040 1411 aa21.49■■□□□ 1.03
NEDD1-205ENST00000553609 NPHP3Q7Z494 1330 aa21.49■■□□□ 1.03
NEDD1-205ENST00000553609 SLC4A1APQ9BWU0 796 aaKnown RBP21.48■■□□□ 1.03
NEDD1-205ENST00000553609 ADGRF5Q8IZF2 1346 aa21.47■■□□□ 1.03
NEDD1-205ENST00000553609 ESCO1Q5FWF5 840 aa21.46■■□□□ 1.03
NEDD1-205ENST00000553609 SPATA31E1Q6ZUB1 1445 aa21.46■■□□□ 1.03
NEDD1-205ENST00000553609 MARF1Q9Y4F3 1742 aaKnown RBP21.44■■□□□ 1.02
NEDD1-205ENST00000553609 FOXO3O43524 673 aa21.43■■□□□ 1.02
NEDD1-205ENST00000553609 XPCQ01831 940 aaPredicted RBP21.43■■□□□ 1.02
NEDD1-205ENST00000553609 LRPPRCP42704 1394 aaKnown RBP21.43■■□□□ 1.02
NEDD1-205ENST00000553609 IFT172Q9UG01 1749 aa21.43■■□□□ 1.02
NEDD1-205ENST00000553609 PLEKHH1Q9ULM0 1364 aa21.42■■□□□ 1.02
NEDD1-205ENST00000553609 KNDC1Q76NI1 1749 aa21.41■■□□□ 1.02
NEDD1-205ENST00000553609 ABCC11Q96J66 1382 aa21.41■■□□□ 1.02
NEDD1-205ENST00000553609 WAPLQ7Z5K2 1190 aa21.41■■□□□ 1.02
NEDD1-205ENST00000553609 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.4■■□□□ 1.02
NEDD1-205ENST00000553609 CCDC144AA2RUR9 1427 aa21.39■■□□□ 1.02
NEDD1-205ENST00000553609 PIK3C2GO75747 1445 aa21.39■■□□□ 1.02
NEDD1-205ENST00000553609 FMN2Q9NZ56 1722 aa21.39■■□□□ 1.01
NEDD1-205ENST00000553609 SLIT2O94813 1529 aa21.39■■□□□ 1.01
NEDD1-205ENST00000553609 ANKRD30BQ9BXX2 1392 aa21.38■■□□□ 1.01
NEDD1-205ENST00000553609 GJD4Q96KN9 370 aaPredicted RBP21.38■■□□□ 1.01
NEDD1-205ENST00000553609 STK26Q9P289 416 aa21.38■■□□□ 1.01
NEDD1-205ENST00000553609 GLI3P10071 1580 aa21.38■■□□□ 1.01
NEDD1-205ENST00000553609 NUTM2FA1L443 756 aa21.37■■□□□ 1.01
NEDD1-205ENST00000553609 SPATA31A3Q5VYP0 1347 aa21.36■■□□□ 1.01
NEDD1-205ENST00000553609 TMEM132EQ6IEE7 984 aa21.36■■□□□ 1.01
NEDD1-205ENST00000553609 KIF1AQ12756 1690 aa21.35■■□□□ 1.01
NEDD1-205ENST00000553609 RALGAPBQ86X10 1494 aa21.35■■□□□ 1.01
NEDD1-205ENST00000553609 RGL3Q3MIN7 710 aa21.35■■□□□ 1.01
NEDD1-205ENST00000553609 YTHDC2Q9H6S0 1430 aaKnown RBP21.34■■□□□ 1.01
NEDD1-205ENST00000553609 USP32Q8NFA0 1604 aa21.33■■□□□ 1.01
NEDD1-205ENST00000553609 CCDC125Q86Z20 511 aa21.33■■□□□ 1.01
NEDD1-205ENST00000553609 UNC5CLQ8IV45 518 aa21.32■■□□□ 1
NEDD1-205ENST00000553609 ZRANB1Q9UGI0 708 aa21.32■■□□□ 1
NEDD1-205ENST00000553609 NRXN1Q9ULB1 1477 aa21.29■■□□□ 1
NEDD1-205ENST00000553609 MPHOSPH9Q99550 1183 aa21.29■■□□□ 1
NEDD1-205ENST00000553609 TNS3Q68CZ2 1445 aa21.29■■□□□ 1
NEDD1-205ENST00000553609 KRT28Q7Z3Y7 464 aa21.28■■□□□ 1
NEDD1-205ENST00000553609 SIRT1Q96EB6 747 aa21.28■■□□□ 1
NEDD1-205ENST00000553609 BLMP54132 1417 aaPredicted RBP21.28■■□□□ 1
NEDD1-205ENST00000553609 BRWD3Q6RI45 1802 aa21.26■□□□□ 0.99
NEDD1-205ENST00000553609 ABCA3Q99758 1704 aa21.25■□□□□ 0.99
NEDD1-205ENST00000553609 C14orf93Q9H972 538 aaKnown RBP21.25■□□□□ 0.99
NEDD1-205ENST00000553609 RGPD8O14715 1765 aaPredicted RBP21.25■□□□□ 0.99
NEDD1-205ENST00000553609 PHF8Q9UPP1 1060 aa21.24■□□□□ 0.99
NEDD1-205ENST00000553609 PLCH1Q4KWH8 1693 aa21.24■□□□□ 0.99
NEDD1-205ENST00000553609 VPS72Q15906 364 aa21.23■□□□□ 0.99
NEDD1-205ENST00000553609 CABLES1Q8TDN4 633 aa21.23■□□□□ 0.99
NEDD1-205ENST00000553609 NWD2Q9ULI1 1742 aa21.23■□□□□ 0.99
NEDD1-205ENST00000553609 SBNO1A3KN83 1393 aa21.23■□□□□ 0.99
NEDD1-205ENST00000553609 ONECUT3O60422 494 aaPredicted RBP21.21■□□□□ 0.99
NEDD1-205ENST00000553609 CFAP70Q5T0N1 1121 aa21.21■□□□□ 0.99
NEDD1-205ENST00000553609 DEFB132Q7Z7B7 95 aa21.21■□□□□ 0.99
NEDD1-205ENST00000553609 SEPT12Q8IYM1 358 aa21.21■□□□□ 0.99
NEDD1-205ENST00000553609 DLC1Q96QB1 1528 aa21.19■□□□□ 0.98
NEDD1-205ENST00000553609 ADGRB2O60241 1585 aa21.19■□□□□ 0.98
NEDD1-205ENST00000553609 PSME1Q06323 249 aa21.18■□□□□ 0.98
NEDD1-205ENST00000553609 PRAM1Q96QH2 718 aa21.18■□□□□ 0.98
NEDD1-205ENST00000553609 ARHGEF10O15013 1369 aa21.18■□□□□ 0.98
NEDD1-205ENST00000553609 DHX57Q6P158 1386 aaKnown RBP21.18■□□□□ 0.98
NEDD1-205ENST00000553609 ANKARQ7Z5J8 1434 aa21.18■□□□□ 0.98
NEDD1-205ENST00000553609 ADGRB1O14514 1584 aa21.17■□□□□ 0.98
NEDD1-205ENST00000553609 NRAPQ86VF7 1730 aa21.16■□□□□ 0.98
NEDD1-205ENST00000553609 TRPM3Q9HCF6 1732 aaPredicted RBP21.16■□□□□ 0.98
NEDD1-205ENST00000553609 HAP1P54257 671 aaPredicted RBP21.15■□□□□ 0.98
NEDD1-205ENST00000553609 SAFB2Q14151 953 aaKnown RBP eCLIP21.15■□□□□ 0.98
NEDD1-205ENST00000553609 FAM83GA6ND36 823 aa21.14■□□□□ 0.97
NEDD1-205ENST00000553609 PLEKHG5O94827 1062 aa21.13■□□□□ 0.97
NEDD1-205ENST00000553609 KRT27Q7Z3Y8 459 aa21.13■□□□□ 0.97
NEDD1-205ENST00000553609 ALS2Q96Q42 1657 aa21.12■□□□□ 0.97
NEDD1-205ENST00000553609 PMFBP1Q8TBY8 1022 aa21.12■□□□□ 0.97
NEDD1-205ENST00000553609 LRP5O75197 1615 aa21.11■□□□□ 0.97
NEDD1-205ENST00000553609 LMOD2Q6P5Q4 547 aa21.11■□□□□ 0.97
NEDD1-205ENST00000553609 PRR36Q9H6K5 1346 aa21.1■□□□□ 0.97
NEDD1-205ENST00000553609 CCDC9Q9Y3X0 531 aaKnown RBP21.1■□□□□ 0.97
NEDD1-205ENST00000553609 CRYBG1Q9Y4K1 1723 aa21.09■□□□□ 0.97
NEDD1-205ENST00000553609 SF3B2Q13435 895 aaKnown RBP21.08■□□□□ 0.97
NEDD1-205ENST00000553609 POGKQ9P215 609 aa21.08■□□□□ 0.97
NEDD1-205ENST00000553609 TULP4Q9NRJ4 1543 aa21.08■□□□□ 0.96
NEDD1-205ENST00000553609 COL14A1Q05707 1796 aaKnown RBP21.07■□□□□ 0.96
NEDD1-205ENST00000553609 ACIN1Q9UKV3 1341 aaKnown RBP21.06■□□□□ 0.96
NEDD1-205ENST00000553609 FAM98CQ17RN3 349 aaKnown RBP21.06■□□□□ 0.96
NEDD1-205ENST00000553609 HIRIP3Q9BW71 556 aaPredicted RBP21.06■□□□□ 0.96
NEDD1-205ENST00000553609 BTG4Q9NY30 223 aa21.06■□□□□ 0.96
NEDD1-205ENST00000553609 THSD7AQ9UPZ6 1657 aa21.04■□□□□ 0.96
NEDD1-205ENST00000553609 TRAK1Q9UPV9 953 aa21.03■□□□□ 0.96
NEDD1-205ENST00000553609 MINK1Q8N4C8 1332 aaPredicted RBP21.03■□□□□ 0.96
NEDD1-205ENST00000553609 EIF3AQ14152 1382 aaKnown RBP21.02■□□□□ 0.96
NEDD1-205ENST00000553609 GPRASP1Q5JY77 1395 aa21.02■□□□□ 0.96
NEDD1-205ENST00000553609 SPATA31A5Q5VU36 1347 aa21.02■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms