RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 FNBP4Q8N3X1 1017 aaPredicted RBP17.75■□□□□ 0.43
CKAP4-202ENST00000552828 TECPR2O15040 1411 aa17.74■□□□□ 0.43
CKAP4-202ENST00000552828 ANKRD30BQ9BXX2 1392 aa17.74■□□□□ 0.43
CKAP4-202ENST00000552828 CCDC144AA2RUR9 1427 aa17.73■□□□□ 0.43
CKAP4-202ENST00000552828 CDC42BPGQ6DT37 1551 aa17.73■□□□□ 0.43
CKAP4-202ENST00000552828 NPHP3Q7Z494 1330 aa17.72■□□□□ 0.43
CKAP4-202ENST00000552828 LRPPRCP42704 1394 aaKnown RBP17.72■□□□□ 0.43
CKAP4-202ENST00000552828 ABCC11Q96J66 1382 aa17.72■□□□□ 0.43
CKAP4-202ENST00000552828 ESCO1Q5FWF5 840 aa17.72■□□□□ 0.43
CKAP4-202ENST00000552828 MPHOSPH9Q99550 1183 aa17.72■□□□□ 0.43
CKAP4-202ENST00000552828 USP21Q9UK80 565 aa17.71■□□□□ 0.43
CKAP4-202ENST00000552828 COL22A1Q8NFW1 1626 aaPredicted RBP17.71■□□□□ 0.43
CKAP4-202ENST00000552828 MYOM2P54296 1465 aa17.7■□□□□ 0.42
CKAP4-202ENST00000552828 PXDNQ92626 1479 aa17.7■□□□□ 0.42
CKAP4-202ENST00000552828 RGL3Q3MIN7 710 aa17.7■□□□□ 0.42
CKAP4-202ENST00000552828 TRPC5Q9UL62 973 aaPredicted RBP17.7■□□□□ 0.42
CKAP4-202ENST00000552828 WAPLQ7Z5K2 1190 aa17.69■□□□□ 0.42
CKAP4-202ENST00000552828 FOXO3O43524 673 aa17.68■□□□□ 0.42
CKAP4-202ENST00000552828 PIK3C2GO75747 1445 aa17.68■□□□□ 0.42
CKAP4-202ENST00000552828 ATRNO75882 1429 aa17.68■□□□□ 0.42
CKAP4-202ENST00000552828 STK26Q9P289 416 aa17.68■□□□□ 0.42
CKAP4-202ENST00000552828 SIRT1Q96EB6 747 aa17.67■□□□□ 0.42
CKAP4-202ENST00000552828 TMEM132EQ6IEE7 984 aa17.66■□□□□ 0.42
CKAP4-202ENST00000552828 ACIN1Q9UKV3 1341 aaKnown RBP17.66■□□□□ 0.42
CKAP4-202ENST00000552828 PLEKHH1Q9ULM0 1364 aa17.66■□□□□ 0.42
CKAP4-202ENST00000552828 BCL9LQ86UU0 1499 aa17.65■□□□□ 0.42
CKAP4-202ENST00000552828 ATAD2Q6PL18 1390 aa17.65■□□□□ 0.42
CKAP4-202ENST00000552828 SRCAPQ6ZRS2 3230 aa17.64■□□□□ 0.42
CKAP4-202ENST00000552828 YTHDC2Q9H6S0 1430 aaKnown RBP17.64■□□□□ 0.42
CKAP4-202ENST00000552828 IFT172Q9UG01 1749 aa17.64■□□□□ 0.41
CKAP4-202ENST00000552828 XPCQ01831 940 aaPredicted RBP17.63■□□□□ 0.41
CKAP4-202ENST00000552828 C14orf93Q9H972 538 aaKnown RBP17.63■□□□□ 0.41
CKAP4-202ENST00000552828 NRXN1Q9ULB1 1477 aa17.62■□□□□ 0.41
CKAP4-202ENST00000552828 KNDC1Q76NI1 1749 aa17.61■□□□□ 0.41
CKAP4-202ENST00000552828 NUTM2FA1L443 756 aa17.61■□□□□ 0.41
CKAP4-202ENST00000552828 SPATA31A3Q5VYP0 1347 aa17.61■□□□□ 0.41
CKAP4-202ENST00000552828 EP400Q96L91 3159 aa17.6■□□□□ 0.41
CKAP4-202ENST00000552828 GJD4Q96KN9 370 aaPredicted RBP17.59■□□□□ 0.41
CKAP4-202ENST00000552828 FMN2Q9NZ56 1722 aa17.58■□□□□ 0.4
CKAP4-202ENST00000552828 DHX57Q6P158 1386 aaKnown RBP17.57■□□□□ 0.4
CKAP4-202ENST00000552828 CFAP70Q5T0N1 1121 aa17.57■□□□□ 0.4
CKAP4-202ENST00000552828 KRT28Q7Z3Y7 464 aa17.57■□□□□ 0.4
CKAP4-202ENST00000552828 CCDC125Q86Z20 511 aa17.57■□□□□ 0.4
CKAP4-202ENST00000552828 UNC5CLQ8IV45 518 aa17.57■□□□□ 0.4
CKAP4-202ENST00000552828 SLIT2O94813 1529 aa17.57■□□□□ 0.4
CKAP4-202ENST00000552828 KIF1AQ12756 1690 aa17.56■□□□□ 0.4
CKAP4-202ENST00000552828 PHF8Q9UPP1 1060 aa17.55■□□□□ 0.4
CKAP4-202ENST00000552828 MARF1Q9Y4F3 1742 aaKnown RBP17.55■□□□□ 0.4
CKAP4-202ENST00000552828 PSME1Q06323 249 aa17.54■□□□□ 0.4
CKAP4-202ENST00000552828 PRAM1Q96QH2 718 aa17.53■□□□□ 0.4
CKAP4-202ENST00000552828 SBNO1A3KN83 1393 aa17.53■□□□□ 0.4
CKAP4-202ENST00000552828 RALGAPBQ86X10 1494 aa17.52■□□□□ 0.4
CKAP4-202ENST00000552828 TNS3Q68CZ2 1445 aa17.52■□□□□ 0.4
CKAP4-202ENST00000552828 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.52■□□□□ 0.39
CKAP4-202ENST00000552828 DLC1Q96QB1 1528 aa17.51■□□□□ 0.39
CKAP4-202ENST00000552828 USP32Q8NFA0 1604 aa17.5■□□□□ 0.39
CKAP4-202ENST00000552828 GLI3P10071 1580 aa17.49■□□□□ 0.39
CKAP4-202ENST00000552828 ANKARQ7Z5J8 1434 aa17.49■□□□□ 0.39
CKAP4-202ENST00000552828 VPS72Q15906 364 aa17.49■□□□□ 0.39
CKAP4-202ENST00000552828 ARHGEF10O15013 1369 aa17.49■□□□□ 0.39
CKAP4-202ENST00000552828 ONECUT3O60422 494 aaPredicted RBP17.48■□□□□ 0.39
CKAP4-202ENST00000552828 SAFB2Q14151 953 aaKnown RBP eCLIP17.48■□□□□ 0.39
CKAP4-202ENST00000552828 CABLES1Q8TDN4 633 aa17.48■□□□□ 0.39
CKAP4-202ENST00000552828 POGKQ9P215 609 aa17.48■□□□□ 0.39
CKAP4-202ENST00000552828 ZRANB1Q9UGI0 708 aa17.48■□□□□ 0.39
CKAP4-202ENST00000552828 RAB3GAP2Q9H2M9 1393 aa17.48■□□□□ 0.39
CKAP4-202ENST00000552828 ADGRB1O14514 1584 aa17.47■□□□□ 0.39
CKAP4-202ENST00000552828 ADGRB2O60241 1585 aa17.45■□□□□ 0.38
CKAP4-202ENST00000552828 HAP1P54257 671 aaPredicted RBP17.45■□□□□ 0.38
CKAP4-202ENST00000552828 SEPT12Q8IYM1 358 aa17.45■□□□□ 0.38
CKAP4-202ENST00000552828 STAC3Q96MF2 364 aa17.45■□□□□ 0.38
CKAP4-202ENST00000552828 BLMP54132 1417 aaPredicted RBP17.45■□□□□ 0.38
CKAP4-202ENST00000552828 RGPD8O14715 1765 aaPredicted RBP17.44■□□□□ 0.38
CKAP4-202ENST00000552828 FAM83GA6ND36 823 aa17.44■□□□□ 0.38
CKAP4-202ENST00000552828 PMFBP1Q8TBY8 1022 aa17.44■□□□□ 0.38
CKAP4-202ENST00000552828 LMOD2Q6P5Q4 547 aa17.42■□□□□ 0.38
CKAP4-202ENST00000552828 TRAK1Q9UPV9 953 aa17.42■□□□□ 0.38
CKAP4-202ENST00000552828 EIF3AQ14152 1382 aaKnown RBP17.41■□□□□ 0.38
CKAP4-202ENST00000552828 HRCP23327 699 aa17.41■□□□□ 0.38
CKAP4-202ENST00000552828 PRR36Q9H6K5 1346 aa17.41■□□□□ 0.38
CKAP4-202ENST00000552828 NWD2Q9ULI1 1742 aa17.41■□□□□ 0.38
CKAP4-202ENST00000552828 WASLO00401 505 aaPredicted RBP17.4■□□□□ 0.38
CKAP4-202ENST00000552828 DCAF11Q8TEB1 546 aa17.4■□□□□ 0.38
CKAP4-202ENST00000552828 HIRIP3Q9BW71 556 aaPredicted RBP17.4■□□□□ 0.38
CKAP4-202ENST00000552828 GPRASP1Q5JY77 1395 aa17.4■□□□□ 0.38
CKAP4-202ENST00000552828 MINK1Q8N4C8 1332 aaPredicted RBP17.39■□□□□ 0.37
CKAP4-202ENST00000552828 ABCA3Q99758 1704 aa17.38■□□□□ 0.37
CKAP4-202ENST00000552828 TULP4Q9NRJ4 1543 aa17.38■□□□□ 0.37
CKAP4-202ENST00000552828 PLEKHG5O94827 1062 aa17.38■□□□□ 0.37
CKAP4-202ENST00000552828 KRT27Q7Z3Y8 459 aa17.38■□□□□ 0.37
CKAP4-202ENST00000552828 KDM2AQ9Y2K7 1162 aa17.38■□□□□ 0.37
CKAP4-202ENST00000552828 PLCH1Q4KWH8 1693 aa17.38■□□□□ 0.37
CKAP4-202ENST00000552828 TRPM3Q9HCF6 1732 aaPredicted RBP17.38■□□□□ 0.37
CKAP4-202ENST00000552828 CCDC9Q9Y3X0 531 aaKnown RBP17.37■□□□□ 0.37
CKAP4-202ENST00000552828 DEFB132Q7Z7B7 95 aa17.36■□□□□ 0.37
CKAP4-202ENST00000552828 BTG4Q9NY30 223 aa17.36■□□□□ 0.37
CKAP4-202ENST00000552828 BRWD3Q6RI45 1802 aa17.35■□□□□ 0.37
CKAP4-202ENST00000552828 SF3B2Q13435 895 aaKnown RBP17.35■□□□□ 0.37
CKAP4-202ENST00000552828 ALS2Q96Q42 1657 aa17.35■□□□□ 0.37
CKAP4-202ENST00000552828 NGDNQ8NEJ9 315 aaKnown RBP17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms