RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 TMEM151AQ8N4L1 468 aa5.89□□□□□ -1.47
LIMA1-209ENST00000552008 SLC27A5Q9Y2P5 690 aa5.89□□□□□ -1.47
LIMA1-209ENST00000552008 ATP6V1AP38606 617 aa5.88□□□□□ -1.47
LIMA1-209ENST00000552008 FUT2Q10981 343 aa5.88□□□□□ -1.47
LIMA1-209ENST00000552008 MSS51Q4VC12 460 aa5.88□□□□□ -1.47
LIMA1-209ENST00000552008 TRIM46Q7Z4K8 759 aa5.88□□□□□ -1.47
LIMA1-209ENST00000552008 SALL2Q9Y467 1007 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-209ENST00000552008 FECHP22830 423 aa5.87□□□□□ -1.47
LIMA1-209ENST00000552008 BRICD5Q6PL45 260 aa5.87□□□□□ -1.47
LIMA1-209ENST00000552008 GDF11O95390 407 aa5.86□□□□□ -1.47
LIMA1-209ENST00000552008 ALDH1A1P00352 501 aa5.86□□□□□ -1.47
LIMA1-209ENST00000552008 RC3H1Q5TC82 1133 aaKnown RBP5.86□□□□□ -1.47
LIMA1-209ENST00000552008 RDH13Q8NBN7 331 aa5.86□□□□□ -1.47
LIMA1-209ENST00000552008 PXYLP1Q8TE99 480 aa5.86□□□□□ -1.47
LIMA1-209ENST00000552008 CAPN5O15484 640 aaPredicted RBP5.85□□□□□ -1.47
LIMA1-209ENST00000552008 OATP04181 439 aa5.85□□□□□ -1.47
LIMA1-209ENST00000552008 MLLT3P42568 568 aaPredicted RBP5.85□□□□□ -1.47
LIMA1-209ENST00000552008 RASSF7Q02833 373 aa5.85□□□□□ -1.47
LIMA1-209ENST00000552008 RNF19BQ6ZMZ0 732 aa5.84□□□□□ -1.47
LIMA1-209ENST00000552008 NUTM2FA1L443 756 aa5.83□□□□□ -1.48
LIMA1-209ENST00000552008 VSIG8P0DPA2 414 aa5.83□□□□□ -1.48
LIMA1-209ENST00000552008 SKOR1P84550 965 aa5.83□□□□□ -1.48
LIMA1-209ENST00000552008 MMP16P51512 607 aa5.82□□□□□ -1.48
LIMA1-209ENST00000552008 WNT7BP56706 349 aa5.82□□□□□ -1.48
LIMA1-209ENST00000552008 XP32Q5T750 250 aa5.82□□□□□ -1.48
LIMA1-209ENST00000552008 ZFP42Q96MM3 310 aa5.82□□□□□ -1.48
LIMA1-209ENST00000552008 DDX11L8A8MPP1 907 aa5.81□□□□□ -1.48
LIMA1-209ENST00000552008 RNF225M0QZC1 329 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-209ENST00000552008 METTL3Q86U44 580 aaKnown RBP5.81□□□□□ -1.48
LIMA1-209ENST00000552008 FCHSD2O94868 740 aa5.8□□□□□ -1.48
LIMA1-209ENST00000552008 GCGRP47871 477 aa5.8□□□□□ -1.48
LIMA1-209ENST00000552008 AMER1Q5JTC6 1135 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-209ENST00000552008 CCDC24Q8N4L8 307 aa5.8□□□□□ -1.48
LIMA1-209ENST00000552008 WASF2Q9Y6W5 498 aa5.8□□□□□ -1.48
LIMA1-209ENST00000552008 DAXXQ9UER7 740 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-209ENST00000552008 DXOO77932 396 aaKnown RBP5.78□□□□□ -1.48
LIMA1-209ENST00000552008 Q3C1V9 767 aa5.78□□□□□ -1.48
LIMA1-209ENST00000552008 GPAT2Q6NUI2 795 aa5.78□□□□□ -1.48
LIMA1-209ENST00000552008 SIAH2O43255 324 aa5.77□□□□□ -1.49
LIMA1-209ENST00000552008 GRIPAP1Q4V328 841 aa5.77□□□□□ -1.49
LIMA1-209ENST00000552008 BBXQ8WY36 941 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-209ENST00000552008 SOBPA7XYQ1 873 aa5.76□□□□□ -1.49
LIMA1-209ENST00000552008 IGHA1P01876 353 aa5.76□□□□□ -1.49
LIMA1-209ENST00000552008 EHBP1Q8NDI1 1231 aa5.76□□□□□ -1.49
LIMA1-209ENST00000552008 ADAMTS8Q9UP79 889 aa5.76□□□□□ -1.49
LIMA1-209ENST00000552008 SCARF1Q14162 830 aa5.75□□□□□ -1.49
LIMA1-209ENST00000552008 MRPL14Q6P1L8 145 aaKnown RBP5.75□□□□□ -1.49
LIMA1-209ENST00000552008 SULF1Q8IWU6 871 aa5.75□□□□□ -1.49
LIMA1-209ENST00000552008 SPRYD3Q8NCJ5 442 aa5.75□□□□□ -1.49
LIMA1-209ENST00000552008 USB1Q9BQ65 265 aaKnown RBP5.75□□□□□ -1.49
LIMA1-209ENST00000552008 DNMT3AQ9Y6K1 912 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-209ENST00000552008 PURBQ96QR8 312 aaKnown RBP5.74□□□□□ -1.49
LIMA1-209ENST00000552008 KRTAP4-8Q9BYQ9 185 aa5.74□□□□□ -1.49
LIMA1-209ENST00000552008 RTN4Q9NQC3 1192 aaKnown RBP5.73□□□□□ -1.49
LIMA1-209ENST00000552008 PPFIA3O75145 1194 aa5.72□□□□□ -1.49
LIMA1-209ENST00000552008 NLRP7Q8WX94 980 aa5.72□□□□□ -1.49
LIMA1-209ENST00000552008 ARHGEF1Q92888 912 aaKnown RBP5.72□□□□□ -1.49
LIMA1-209ENST00000552008 IRS1P35568 1242 aa5.71□□□□□ -1.5
LIMA1-209ENST00000552008 FOXK2Q01167 660 aa5.71□□□□□ -1.5
LIMA1-209ENST00000552008 HIC1Q14526 733 aa5.71□□□□□ -1.5
LIMA1-209ENST00000552008 KRT76Q01546 638 aa5.7□□□□□ -1.5
LIMA1-209ENST00000552008 MAN1A2O60476 641 aa5.69□□□□□ -1.5
LIMA1-209ENST00000552008 NNTQ13423 1086 aa5.69□□□□□ -1.5
LIMA1-209ENST00000552008 CNTNAP3BQ96NU0 1288 aa5.69□□□□□ -1.5
LIMA1-209ENST00000552008 CNTNAP3Q9BZ76 1288 aa5.69□□□□□ -1.5
LIMA1-209ENST00000552008 TLL2Q9Y6L7 1015 aa5.69□□□□□ -1.5
LIMA1-209ENST00000552008 TIMP2P16035 220 aa5.67□□□□□ -1.5
LIMA1-209ENST00000552008 JUNDP17535 347 aa5.67□□□□□ -1.5
LIMA1-209ENST00000552008 WDR4P57081 412 aaKnown RBP5.67□□□□□ -1.5
LIMA1-209ENST00000552008 SH3BP2P78314 561 aa5.67□□□□□ -1.5
LIMA1-209ENST00000552008 ZNF385CQ66K41 422 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-209ENST00000552008 PTCRAQ6ISU1 281 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-209ENST00000552008 KANK3Q6NY19 840 aa5.67□□□□□ -1.5
LIMA1-209ENST00000552008 SVOPQ8N4V2 548 aa5.67□□□□□ -1.5
LIMA1-209ENST00000552008 PLEKHG3A1L390 1219 aa5.66□□□□□ -1.5
LIMA1-209ENST00000552008 ADAM23O75077 832 aa5.66□□□□□ -1.5
LIMA1-209ENST00000552008 ADH1CP00326 375 aa5.66□□□□□ -1.5
LIMA1-209ENST00000552008 NUDT12Q9BQG2 462 aa5.66□□□□□ -1.5
LIMA1-209ENST00000552008 GPR161Q8N6U8 529 aaKnown RBP5.65□□□□□ -1.5
LIMA1-209ENST00000552008 KCNV2Q8TDN2 545 aa5.65□□□□□ -1.5
LIMA1-209ENST00000552008 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.65□□□□□ -1.5
LIMA1-209ENST00000552008 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-209ENST00000552008 GNPATO15228 680 aa5.64□□□□□ -1.51
LIMA1-209ENST00000552008 KDM4AO75164 1064 aa5.64□□□□□ -1.51
LIMA1-209ENST00000552008 MARSP56192 900 aaKnown RBP5.64□□□□□ -1.51
LIMA1-209ENST00000552008 C6orf118Q5T5N4 469 aa5.64□□□□□ -1.51
LIMA1-209ENST00000552008 HLA-CQ95604 372 aa5.64□□□□□ -1.51
LIMA1-209ENST00000552008 PSMG3-AS1Q96PY0 264 aa5.64□□□□□ -1.51
LIMA1-209ENST00000552008 PHOX2BQ99453 314 aa5.64□□□□□ -1.51
LIMA1-209ENST00000552008 COL25A1Q9BXS0 654 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-209ENST00000552008 KRTAP9-2Q9BYQ4 174 aa5.64□□□□□ -1.51
LIMA1-209ENST00000552008 MSTNO14793 375 aa5.62□□□□□ -1.51
LIMA1-209ENST00000552008 ARHGEF15O94989 841 aa5.62□□□□□ -1.51
LIMA1-209ENST00000552008 CD46P15529 392 aa5.62□□□□□ -1.51
LIMA1-209ENST00000552008 LINC01559Q495D7 138 aa5.62□□□□□ -1.51
LIMA1-209ENST00000552008 MPNDQ8N594 471 aa5.62□□□□□ -1.51
LIMA1-209ENST00000552008 WHAMMQ8TF30 809 aa5.62□□□□□ -1.51
LIMA1-209ENST00000552008 SCARF2Q96GP6 870 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-209ENST00000552008 CFAP44Q96MT7 982 aa5.62□□□□□ -1.51
LIMA1-209ENST00000552008 KLF16Q9BXK1 252 aaPredicted RBP5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms