RNA–Protein interactions for RNA: ENST00000551931.5

LETMD1-231, Transcript of LETM1 domain containing 1, human

TSL 3

Gene LETMD1, Length 705 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LETMD1-231	ENST00000551931	QTRT2	Q9H974	415 aa	Known RBP	18.95	■□□□□ 0.62
LETMD1-231	ENST00000551931	RBM6	P78332	1123 aa	Known RBP	18.93	■□□□□ 0.62
LETMD1-231	ENST00000551931	ADGRF5	Q8IZF2	1346 aa		18.93	■□□□□ 0.62
LETMD1-231	ENST00000551931	SPATA31E1	Q6ZUB1	1445 aa		18.92	■□□□□ 0.62
LETMD1-231	ENST00000551931	NGLY1	Q96IV0	654 aa		18.92	■□□□□ 0.62
LETMD1-231	ENST00000551931	CCDC144A	A2RUR9	1427 aa		18.91	■□□□□ 0.62
LETMD1-231	ENST00000551931	FMN2	Q9NZ56	1722 aa		18.91	■□□□□ 0.62
LETMD1-231	ENST00000551931	EP400	Q96L91	3159 aa		18.91	■□□□□ 0.62
LETMD1-231	ENST00000551931	PXDN	Q92626	1479 aa		18.91	■□□□□ 0.62
LETMD1-231	ENST00000551931	RGPD8	O14715	1765 aa	Predicted RBP	18.91	■□□□□ 0.62
LETMD1-231	ENST00000551931	TECPR2	O15040	1411 aa		18.9	■□□□□ 0.62
LETMD1-231	ENST00000551931	MYOM2	P54296	1465 aa		18.9	■□□□□ 0.62
LETMD1-231	ENST00000551931	RGL3	Q3MIN7	710 aa		18.88	■□□□□ 0.61
LETMD1-231	ENST00000551931	ESCO1	Q5FWF5	840 aa		18.87	■□□□□ 0.61
LETMD1-231	ENST00000551931	USP21	Q9UK80	565 aa		18.87	■□□□□ 0.61
LETMD1-231	ENST00000551931	PIK3C2G	O75747	1445 aa		18.86	■□□□□ 0.61
LETMD1-231	ENST00000551931	LRPPRC	P42704	1394 aa	Known RBP	18.86	■□□□□ 0.61
LETMD1-231	ENST00000551931	PLEKHH1	Q9ULM0	1364 aa		18.86	■□□□□ 0.61
LETMD1-231	ENST00000551931	NPHP3	Q7Z494	1330 aa		18.86	■□□□□ 0.61
LETMD1-231	ENST00000551931	WAPL	Q7Z5K2	1190 aa		18.86	■□□□□ 0.61
LETMD1-231	ENST00000551931	STK26	Q9P289	416 aa		18.86	■□□□□ 0.61
LETMD1-231	ENST00000551931	KIF1A	Q12756	1690 aa		18.85	■□□□□ 0.61
LETMD1-231	ENST00000551931	ATRN	O75882	1429 aa		18.85	■□□□□ 0.61
LETMD1-231	ENST00000551931	ANKRD30B	Q9BXX2	1392 aa		18.85	■□□□□ 0.61
LETMD1-231	ENST00000551931	XPC	Q01831	940 aa	Predicted RBP	18.85	■□□□□ 0.61
LETMD1-231	ENST00000551931	FNBP4	Q8N3X1	1017 aa	Predicted RBP	18.85	■□□□□ 0.61
LETMD1-231	ENST00000551931	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	18.85	■□□□□ 0.61
LETMD1-231	ENST00000551931	TMEM132E	Q6IEE7	984 aa		18.84	■□□□□ 0.61
LETMD1-231	ENST00000551931	MPHOSPH9	Q99550	1183 aa		18.84	■□□□□ 0.61
LETMD1-231	ENST00000551931	SRCAP	Q6ZRS2	3230 aa		18.83	■□□□□ 0.61
LETMD1-231	ENST00000551931	ABCC11	Q96J66	1382 aa		18.83	■□□□□ 0.61
LETMD1-231	ENST00000551931	NUTM2F	A1L443	756 aa		18.83	■□□□□ 0.6
LETMD1-231	ENST00000551931	FOXO3	O43524	673 aa		18.83	■□□□□ 0.6
LETMD1-231	ENST00000551931	TRPC5	Q9UL62	973 aa	Predicted RBP	18.83	■□□□□ 0.6
LETMD1-231	ENST00000551931	BCL9L	Q86UU0	1499 aa		18.82	■□□□□ 0.6
LETMD1-231	ENST00000551931	YTHDC2	Q9H6S0	1430 aa	Known RBP	18.82	■□□□□ 0.6
LETMD1-231	ENST00000551931	ATAD2	Q6PL18	1390 aa		18.81	■□□□□ 0.6
LETMD1-231	ENST00000551931	ABCA3	Q99758	1704 aa		18.79	■□□□□ 0.6
LETMD1-231	ENST00000551931	BRWD3	Q6RI45	1802 aa		18.79	■□□□□ 0.6
LETMD1-231	ENST00000551931	USP32	Q8NFA0	1604 aa		18.78	■□□□□ 0.6
LETMD1-231	ENST00000551931	NRXN1	Q9ULB1	1477 aa		18.77	■□□□□ 0.6
LETMD1-231	ENST00000551931	GLI3	P10071	1580 aa		18.76	■□□□□ 0.59
LETMD1-231	ENST00000551931	PLCH1	Q4KWH8	1693 aa		18.76	■□□□□ 0.59
LETMD1-231	ENST00000551931	SPATA31A3	Q5VYP0	1347 aa		18.74	■□□□□ 0.59
LETMD1-231	ENST00000551931	SLIT2	O94813	1529 aa		18.74	■□□□□ 0.59
LETMD1-231	ENST00000551931	C14orf93	Q9H972	538 aa	Known RBP	18.73	■□□□□ 0.59
LETMD1-231	ENST00000551931	NWD2	Q9ULI1	1742 aa		18.72	■□□□□ 0.59
LETMD1-231	ENST00000551931	CFAP70	Q5T0N1	1121 aa		18.72	■□□□□ 0.59
LETMD1-231	ENST00000551931	SIRT1	Q96EB6	747 aa		18.71	■□□□□ 0.59
LETMD1-231	ENST00000551931	GJD4	Q96KN9	370 aa	Predicted RBP	18.71	■□□□□ 0.59
LETMD1-231	ENST00000551931	TNS3	Q68CZ2	1445 aa		18.71	■□□□□ 0.59
LETMD1-231	ENST00000551931	RALGAPB	Q86X10	1494 aa		18.71	■□□□□ 0.59
LETMD1-231	ENST00000551931	ADGRB2	O60241	1585 aa		18.7	■□□□□ 0.58
LETMD1-231	ENST00000551931	KRT28	Q7Z3Y7	464 aa		18.7	■□□□□ 0.58
LETMD1-231	ENST00000551931	DLC1	Q96QB1	1528 aa		18.69	■□□□□ 0.58
LETMD1-231	ENST00000551931	DHX57	Q6P158	1386 aa	Known RBP	18.69	■□□□□ 0.58
LETMD1-231	ENST00000551931	TRPM3	Q9HCF6	1732 aa	Predicted RBP	18.69	■□□□□ 0.58
LETMD1-231	ENST00000551931	ADGRB1	O14514	1584 aa		18.68	■□□□□ 0.58
LETMD1-231	ENST00000551931	UNC5CL	Q8IV45	518 aa		18.68	■□□□□ 0.58
LETMD1-231	ENST00000551931	PHF8	Q9UPP1	1060 aa		18.68	■□□□□ 0.58
LETMD1-231	ENST00000551931	SAFB2	Q14151	953 aa	Known RBP eCLIP	18.67	■□□□□ 0.58
LETMD1-231	ENST00000551931	PRAM1	Q96QH2	718 aa		18.67	■□□□□ 0.58
LETMD1-231	ENST00000551931	NRAP	Q86VF7	1730 aa		18.66	■□□□□ 0.58
LETMD1-231	ENST00000551931	CABLES1	Q8TDN4	633 aa		18.66	■□□□□ 0.58
LETMD1-231	ENST00000551931	ALS2	Q96Q42	1657 aa		18.66	■□□□□ 0.58
LETMD1-231	ENST00000551931	RAB3GAP2	Q9H2M9	1393 aa		18.65	■□□□□ 0.58
LETMD1-231	ENST00000551931	PLEKHG5	O94827	1062 aa		18.64	■□□□□ 0.57
LETMD1-231	ENST00000551931	ACIN1	Q9UKV3	1341 aa	Known RBP	18.64	■□□□□ 0.57
LETMD1-231	ENST00000551931	SBNO1	A3KN83	1393 aa		18.64	■□□□□ 0.57
LETMD1-231	ENST00000551931	CRYBG1	Q9Y4K1	1723 aa		18.63	■□□□□ 0.57
LETMD1-231	ENST00000551931	ANKAR	Q7Z5J8	1434 aa		18.63	■□□□□ 0.57
LETMD1-231	ENST00000551931	HAP1	P54257	671 aa	Predicted RBP	18.62	■□□□□ 0.57
LETMD1-231	ENST00000551931	PSME1	Q06323	249 aa		18.62	■□□□□ 0.57
LETMD1-231	ENST00000551931	CCDC125	Q86Z20	511 aa		18.62	■□□□□ 0.57
LETMD1-231	ENST00000551931	ARHGEF28	Q8N1W1	1705 aa	Known RBP	18.61	■□□□□ 0.57
LETMD1-231	ENST00000551931	PMFBP1	Q8TBY8	1022 aa		18.61	■□□□□ 0.57
LETMD1-231	ENST00000551931	POGK	Q9P215	609 aa		18.61	■□□□□ 0.57
LETMD1-231	ENST00000551931	ARHGEF10	O15013	1369 aa		18.6	■□□□□ 0.57
LETMD1-231	ENST00000551931	LMOD2	Q6P5Q4	547 aa		18.6	■□□□□ 0.57
LETMD1-231	ENST00000551931	ZRANB1	Q9UGI0	708 aa		18.6	■□□□□ 0.57
LETMD1-231	ENST00000551931	BLM	P54132	1417 aa	Predicted RBP	18.59	■□□□□ 0.57
LETMD1-231	ENST00000551931	ITSN1	Q15811	1721 aa		18.59	■□□□□ 0.57
LETMD1-231	ENST00000551931	TULP4	Q9NRJ4	1543 aa		18.59	■□□□□ 0.57
LETMD1-231	ENST00000551931	COL14A1	Q05707	1796 aa	Known RBP	18.58	■□□□□ 0.57
LETMD1-231	ENST00000551931	VPS72	Q15906	364 aa		18.58	■□□□□ 0.56
LETMD1-231	ENST00000551931	HIRIP3	Q9BW71	556 aa	Predicted RBP	18.58	■□□□□ 0.56
LETMD1-231	ENST00000551931	TRAK1	Q9UPV9	953 aa		18.58	■□□□□ 0.56
LETMD1-231	ENST00000551931	PRR36	Q9H6K5	1346 aa		18.57	■□□□□ 0.56
LETMD1-231	ENST00000551931	SEPT12	Q8IYM1	358 aa		18.57	■□□□□ 0.56
LETMD1-231	ENST00000551931	MINK1	Q8N4C8	1332 aa	Predicted RBP	18.55	■□□□□ 0.56
LETMD1-231	ENST00000551931	FAM83G	A6ND36	823 aa		18.55	■□□□□ 0.56
LETMD1-231	ENST00000551931	CCDC9	Q9Y3X0	531 aa	Known RBP	18.55	■□□□□ 0.56
LETMD1-231	ENST00000551931	ONECUT3	O60422	494 aa	Predicted RBP	18.54	■□□□□ 0.56
LETMD1-231	ENST00000551931	DEFB132	Q7Z7B7	95 aa		18.54	■□□□□ 0.56
LETMD1-231	ENST00000551931	KDM2A	Q9Y2K7	1162 aa		18.54	■□□□□ 0.56
LETMD1-231	ENST00000551931	EIF3A	Q14152	1382 aa	Known RBP	18.53	■□□□□ 0.56
LETMD1-231	ENST00000551931	PHRF1	Q9P1Y6	1649 aa	Known RBP	18.52	■□□□□ 0.56
LETMD1-231	ENST00000551931	DCAF11	Q8TEB1	546 aa		18.52	■□□□□ 0.56
LETMD1-231	ENST00000551931	TOPAZ1	Q8N9V7	1692 aa		18.51	■□□□□ 0.55
LETMD1-231	ENST00000551931	WASL	O00401	505 aa	Predicted RBP	18.51	■□□□□ 0.55

Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms