RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	REPIN1	Q9BWE0	567 aa	Known RBP	5.93	□□□□□ -1.46
PTCH1-223	ENST00000551623	SALL2	Q9Y467	1007 aa	Predicted RBP	5.93	□□□□□ -1.46
PTCH1-223	ENST00000551623		H3BM21	787 aa		5.92	□□□□□ -1.46
PTCH1-223	ENST00000551623	OAT	P04181	439 aa		5.92	□□□□□ -1.46
PTCH1-223	ENST00000551623	BRICD5	Q6PL45	260 aa		5.92	□□□□□ -1.46
PTCH1-223	ENST00000551623	RDH13	Q8NBN7	331 aa		5.92	□□□□□ -1.46
PTCH1-223	ENST00000551623	SPRYD3	Q8NCJ5	442 aa		5.92	□□□□□ -1.46
PTCH1-223	ENST00000551623	NUTM2F	A1L443	756 aa		5.91	□□□□□ -1.46
PTCH1-223	ENST00000551623	FECH	P22830	423 aa		5.91	□□□□□ -1.46
PTCH1-223	ENST00000551623	VEGFB	P49765	207 aa		5.91	□□□□□ -1.46
PTCH1-223	ENST00000551623	ERBB4	Q15303	1308 aa		5.91	□□□□□ -1.46
PTCH1-223	ENST00000551623	FCHSD2	O94868	740 aa		5.9	□□□□□ -1.46
PTCH1-223	ENST00000551623	RNF19B	Q6ZMZ0	732 aa		5.9	□□□□□ -1.46
PTCH1-223	ENST00000551623	METTL3	Q86U44	580 aa	Known RBP	5.9	□□□□□ -1.46
PTCH1-223	ENST00000551623	BMP1	P13497	986 aa		5.89	□□□□□ -1.47
PTCH1-223	ENST00000551623	TRIM46	Q7Z4K8	759 aa		5.89	□□□□□ -1.47
PTCH1-223	ENST00000551623	MMP16	P51512	607 aa		5.88	□□□□□ -1.47
PTCH1-223	ENST00000551623	RC3H1	Q5TC82	1133 aa	Known RBP	5.88	□□□□□ -1.47
PTCH1-223	ENST00000551623	KCTD17	Q8N5Z5	321 aa		5.88	□□□□□ -1.47
PTCH1-223	ENST00000551623	DAXX	Q9UER7	740 aa	Predicted RBP	5.88	□□□□□ -1.47
PTCH1-223	ENST00000551623	DDX11L8	A8MPP1	907 aa		5.87	□□□□□ -1.47
PTCH1-223	ENST00000551623	ALDH1A1	P00352	501 aa		5.87	□□□□□ -1.47
PTCH1-223	ENST00000551623	GCGR	P47871	477 aa		5.87	□□□□□ -1.47
PTCH1-223	ENST00000551623	KCNMA1	Q12791	1236 aa		5.87	□□□□□ -1.47
PTCH1-223	ENST00000551623	ARHGEF1	Q92888	912 aa	Known RBP	5.87	□□□□□ -1.47
PTCH1-223	ENST00000551623	WNT7B	P56706	349 aa		5.86	□□□□□ -1.47
PTCH1-223	ENST00000551623	SKOR1	P84550	965 aa		5.86	□□□□□ -1.47
PTCH1-223	ENST00000551623	GSK3A	P49840	483 aa		5.85	□□□□□ -1.47
PTCH1-223	ENST00000551623	ABCC9	O60706	1549 aa		5.84	□□□□□ -1.47
PTCH1-223	ENST00000551623	CAPN5	O15484	640 aa	Predicted RBP	5.84	□□□□□ -1.47
PTCH1-223	ENST00000551623	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	5.84	□□□□□ -1.47
PTCH1-223	ENST00000551623	DXO	O77932	396 aa	Known RBP	5.83	□□□□□ -1.48
PTCH1-223	ENST00000551623	HIC1	Q14526	733 aa		5.83	□□□□□ -1.48
PTCH1-223	ENST00000551623		Q3C1V9	767 aa		5.83	□□□□□ -1.48
PTCH1-223	ENST00000551623	GRIPAP1	Q4V328	841 aa		5.83	□□□□□ -1.48
PTCH1-223	ENST00000551623	SULF1	Q8IWU6	871 aa		5.83	□□□□□ -1.48
PTCH1-223	ENST00000551623	VSIG8	P0DPA2	414 aa		5.82	□□□□□ -1.48
PTCH1-223	ENST00000551623	CCDC24	Q8N4L8	307 aa		5.82	□□□□□ -1.48
PTCH1-223	ENST00000551623	SIAH2	O43255	324 aa		5.81	□□□□□ -1.48
PTCH1-223	ENST00000551623	TMEM151A	Q8N4L1	468 aa		5.81	□□□□□ -1.48
PTCH1-223	ENST00000551623	NLRP7	Q8WX94	980 aa		5.81	□□□□□ -1.48
PTCH1-223	ENST00000551623	ZFP42	Q96MM3	310 aa		5.81	□□□□□ -1.48
PTCH1-223	ENST00000551623	CFAP44	Q96MT7	982 aa		5.81	□□□□□ -1.48
PTCH1-223	ENST00000551623	USB1	Q9BQ65	265 aa	Known RBP	5.81	□□□□□ -1.48
PTCH1-223	ENST00000551623	WASF2	Q9Y6W5	498 aa		5.81	□□□□□ -1.48
PTCH1-223	ENST00000551623	GDF11	O95390	407 aa		5.79	□□□□□ -1.48
PTCH1-223	ENST00000551623	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	5.79	□□□□□ -1.48
PTCH1-223	ENST00000551623	EHBP1	Q8NDI1	1231 aa		5.79	□□□□□ -1.48
PTCH1-223	ENST00000551623	KCNV2	Q8TDN2	545 aa		5.79	□□□□□ -1.48
PTCH1-223	ENST00000551623	RASSF7	Q02833	373 aa		5.78	□□□□□ -1.48
PTCH1-223	ENST00000551623	RNF225	M0QZC1	329 aa	Predicted RBP	5.76	□□□□□ -1.49
PTCH1-223	ENST00000551623	GNPAT	O15228	680 aa		5.76	□□□□□ -1.49
PTCH1-223	ENST00000551623	SOBP	A7XYQ1	873 aa		5.75	□□□□□ -1.49
PTCH1-223	ENST00000551623	MRPL14	Q6P1L8	145 aa	Known RBP	5.75	□□□□□ -1.49
PTCH1-223	ENST00000551623	SCARF1	Q14162	830 aa		5.74	□□□□□ -1.49
PTCH1-223	ENST00000551623	PURB	Q96QR8	312 aa	Known RBP	5.74	□□□□□ -1.49
PTCH1-223	ENST00000551623	PHOX2B	Q99453	314 aa		5.74	□□□□□ -1.49
PTCH1-223	ENST00000551623	JUND	P17535	347 aa		5.73	□□□□□ -1.49
PTCH1-223	ENST00000551623	PTCRA	Q6ISU1	281 aa	Predicted RBP	5.73	□□□□□ -1.49
PTCH1-223	ENST00000551623	SEMA3E	O15041	775 aa		5.72	□□□□□ -1.49
PTCH1-223	ENST00000551623	KDM4A	O75164	1064 aa		5.72	□□□□□ -1.49
PTCH1-223	ENST00000551623	CD46	P15529	392 aa		5.72	□□□□□ -1.49
PTCH1-223	ENST00000551623	HLA-C	Q95604	372 aa		5.72	□□□□□ -1.49
PTCH1-223	ENST00000551623	NUDT12	Q9BQG2	462 aa		5.72	□□□□□ -1.49
PTCH1-223	ENST00000551623	ADAMTS8	Q9UP79	889 aa		5.72	□□□□□ -1.49
PTCH1-223	ENST00000551623	GPR37	O15354	613 aa		5.71	□□□□□ -1.5
PTCH1-223	ENST00000551623	SH3BP2	P78314	561 aa		5.71	□□□□□ -1.5
PTCH1-223	ENST00000551623	NNT	Q13423	1086 aa		5.71	□□□□□ -1.5
PTCH1-223	ENST00000551623	XP32	Q5T750	250 aa		5.71	□□□□□ -1.5
PTCH1-223	ENST00000551623	TLL2	Q9Y6L7	1015 aa		5.71	□□□□□ -1.5
PTCH1-223	ENST00000551623	PPFIA3	O75145	1194 aa		5.7	□□□□□ -1.5
PTCH1-223	ENST00000551623	TIMP2	P16035	220 aa		5.7	□□□□□ -1.5
PTCH1-223	ENST00000551623	RBM26	Q5T8P6	1007 aa	Known RBP	5.7	□□□□□ -1.5
PTCH1-223	ENST00000551623	GPAT2	Q6NUI2	795 aa		5.7	□□□□□ -1.5
PTCH1-223	ENST00000551623	PLEKHG3	A1L390	1219 aa		5.69	□□□□□ -1.5
PTCH1-223	ENST00000551623	ADH1C	P00326	375 aa		5.69	□□□□□ -1.5
PTCH1-223	ENST00000551623	IGHA1	P01876	353 aa		5.69	□□□□□ -1.5
PTCH1-223	ENST00000551623	USP46	P62068	366 aa		5.69	□□□□□ -1.5
PTCH1-223	ENST00000551623	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	5.69	□□□□□ -1.5
PTCH1-223	ENST00000551623	CCDC180	Q9P1Z9	1646 aa		5.68	□□□□□ -1.5
PTCH1-223	ENST00000551623	HOXA2	O43364	376 aa		5.68	□□□□□ -1.5
PTCH1-223	ENST00000551623	MAN1A2	O60476	641 aa		5.68	□□□□□ -1.5
PTCH1-223	ENST00000551623	WDR4	P57081	412 aa	Known RBP	5.68	□□□□□ -1.5
PTCH1-223	ENST00000551623	KRT76	Q01546	638 aa		5.68	□□□□□ -1.5
PTCH1-223	ENST00000551623	MPND	Q8N594	471 aa		5.68	□□□□□ -1.5
PTCH1-223	ENST00000551623	SYMPK	Q92797	1274 aa	Known RBP	5.67	□□□□□ -1.5
PTCH1-223	ENST00000551623	VARS	P26640	1264 aa	Known RBP	5.66	□□□□□ -1.5
PTCH1-223	ENST00000551623	GUCA2A	Q02747	115 aa		5.66	□□□□□ -1.5
PTCH1-223	ENST00000551623	LINC01559	Q495D7	138 aa		5.66	□□□□□ -1.5
PTCH1-223	ENST00000551623	P3H3	Q8IVL6	736 aa		5.66	□□□□□ -1.5
PTCH1-223	ENST00000551623	CNTNAP3B	Q96NU0	1288 aa		5.66	□□□□□ -1.5
PTCH1-223	ENST00000551623	KLF16	Q9BXK1	252 aa	Predicted RBP	5.66	□□□□□ -1.5
PTCH1-223	ENST00000551623	CNTNAP3	Q9BZ76	1288 aa		5.66	□□□□□ -1.5
PTCH1-223	ENST00000551623	CCNYL3	P0C7X3	344 aa		5.65	□□□□□ -1.5
PTCH1-223	ENST00000551623	FOXK2	Q01167	660 aa		5.65	□□□□□ -1.5
PTCH1-223	ENST00000551623	RETREG3	Q86VR2	466 aa		5.65	□□□□□ -1.5
PTCH1-223	ENST00000551623	UNC93B1	Q9H1C4	597 aa		5.65	□□□□□ -1.5
PTCH1-223	ENST00000551623	IRS1	P35568	1242 aa		5.64	□□□□□ -1.51
PTCH1-223	ENST00000551623	C6orf118	Q5T5N4	469 aa		5.64	□□□□□ -1.51
PTCH1-223	ENST00000551623	ZNF385C	Q66K41	422 aa	Predicted RBP	5.64	□□□□□ -1.51

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