RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 PTMAP06454 111 aaKnown RBP18.7■□□□□ 0.58
CUX1-214ENST00000550008 CEBPAP49715 358 aaPredicted RBP18.7■□□□□ 0.58
CUX1-214ENST00000550008 KIAA1211Q6ZU35 1233 aa18.7■□□□□ 0.58
CUX1-214ENST00000550008 TESK2Q96S53 571 aa18.7■□□□□ 0.58
CUX1-214ENST00000550008 ABCA5Q8WWZ7 1642 aa18.69■□□□□ 0.58
CUX1-214ENST00000550008 ZNF428Q96B54 188 aa18.69■□□□□ 0.58
CUX1-214ENST00000550008 NOB1Q9ULX3 412 aaKnown RBP18.69■□□□□ 0.58
CUX1-214ENST00000550008 PLCH2O75038 1416 aa18.69■□□□□ 0.58
CUX1-214ENST00000550008 RBM33Q96EV2 1170 aaKnown RBP18.69■□□□□ 0.58
CUX1-214ENST00000550008 KIF16BQ96L93 1317 aa18.69■□□□□ 0.58
CUX1-214ENST00000550008 PZPP20742 1482 aa18.69■□□□□ 0.58
CUX1-214ENST00000550008 PDZRN3Q9UPQ7 1066 aa18.69■□□□□ 0.58
CUX1-214ENST00000550008 DHX29Q7Z478 1369 aaKnown RBP18.68■□□□□ 0.58
CUX1-214ENST00000550008 RPGRIP1LQ68CZ1 1315 aa18.68■□□□□ 0.58
CUX1-214ENST00000550008 ABTB2Q8N961 1025 aa18.67■□□□□ 0.58
CUX1-214ENST00000550008 API5Q9BZZ5 524 aaKnown RBP18.67■□□□□ 0.58
CUX1-214ENST00000550008 RTEL1-TNFRSF6BF6WH68 1400 aa18.66■□□□□ 0.58
CUX1-214ENST00000550008 FOXD4L6Q3SYB3 417 aaPredicted RBP18.66■□□□□ 0.58
CUX1-214ENST00000550008 FOXD4L3Q6VB84 417 aaPredicted RBP18.66■□□□□ 0.58
CUX1-214ENST00000550008 NPHP1O15259 732 aa18.65■□□□□ 0.58
CUX1-214ENST00000550008 BACH2Q9BYV9 841 aa18.65■□□□□ 0.58
CUX1-214ENST00000550008 DCTN1Q14203 1278 aa18.65■□□□□ 0.58
CUX1-214ENST00000550008 TWISTNBQ3B726 338 aaPredicted RBP18.65■□□□□ 0.58
CUX1-214ENST00000550008 C1orf141Q5JVX7 400 aa18.65■□□□□ 0.58
CUX1-214ENST00000550008 NME9Q86XW9 330 aa18.65■□□□□ 0.58
CUX1-214ENST00000550008 PRAG1Q86YV5 1406 aa18.65■□□□□ 0.58
CUX1-214ENST00000550008 PDE3AQ14432 1141 aa18.65■□□□□ 0.58
CUX1-214ENST00000550008 TMPOP42166 694 aaKnown RBP18.64■□□□□ 0.57
CUX1-214ENST00000550008 AMER1Q5JTC6 1135 aaPredicted RBP18.64■□□□□ 0.57
CUX1-214ENST00000550008 FAM135AQ9P2D6 1515 aa18.64■□□□□ 0.57
CUX1-214ENST00000550008 DUSP27Q5VZP5 1158 aa18.64■□□□□ 0.57
CUX1-214ENST00000550008 NUDT16Q96DE0 195 aaKnown RBP18.64■□□□□ 0.57
CUX1-214ENST00000550008 MSH5O43196 834 aa18.63■□□□□ 0.57
CUX1-214ENST00000550008 EMILIN1Q9Y6C2 1016 aa18.63■□□□□ 0.57
CUX1-214ENST00000550008 NUP160Q12769 1436 aa18.63■□□□□ 0.57
CUX1-214ENST00000550008 ASXL2Q76L83 1435 aa18.63■□□□□ 0.57
CUX1-214ENST00000550008 C14orf93Q9H972 538 aaKnown RBP18.63■□□□□ 0.57
CUX1-214ENST00000550008 ESCO1Q5FWF5 840 aa18.63■□□□□ 0.57
CUX1-214ENST00000550008 SCAF11Q99590 1463 aaKnown RBP18.62■□□□□ 0.57
CUX1-214ENST00000550008 XPCQ01831 940 aaPredicted RBP18.62■□□□□ 0.57
CUX1-214ENST00000550008 CCDC61Q9Y6R9 512 aa18.62■□□□□ 0.57
CUX1-214ENST00000550008 RALGAPBQ86X10 1494 aa18.62■□□□□ 0.57
CUX1-214ENST00000550008 GBP4Q96PP9 640 aa18.62■□□□□ 0.57
CUX1-214ENST00000550008 SAMD9Q5K651 1589 aa18.61■□□□□ 0.57
CUX1-214ENST00000550008 KDM5BQ9UGL1 1544 aa18.61■□□□□ 0.57
CUX1-214ENST00000550008 WDR63Q8IWG1 891 aa18.6■□□□□ 0.57
CUX1-214ENST00000550008 MIS18AQ9NYP9 233 aa18.6■□□□□ 0.57
CUX1-214ENST00000550008 ATF7IPQ6VMQ6 1270 aa18.59■□□□□ 0.57
CUX1-214ENST00000550008 ATAD2Q6PL18 1390 aa18.59■□□□□ 0.57
CUX1-214ENST00000550008 AIMP1Q12904 312 aaKnown RBP18.58■□□□□ 0.57
CUX1-214ENST00000550008 C22orf23Q9BZE7 217 aa18.58■□□□□ 0.57
CUX1-214ENST00000550008 PER1O15534 1290 aaPredicted RBP18.58■□□□□ 0.57
CUX1-214ENST00000550008 NLRP2Q9NX02 1062 aa18.58■□□□□ 0.57
CUX1-214ENST00000550008 C9orf78Q9NZ63 289 aaPredicted RBP18.58■□□□□ 0.57
CUX1-214ENST00000550008 CFAP44Q96MT7 982 aa18.57■□□□□ 0.56
CUX1-214ENST00000550008 NAP1L5Q96NT1 182 aaPredicted RBP18.57■□□□□ 0.56
CUX1-214ENST00000550008 PBRM1Q86U86 1689 aa18.57■□□□□ 0.56
CUX1-214ENST00000550008 ITSN2Q9NZM3 1697 aa18.57■□□□□ 0.56
CUX1-214ENST00000550008 RARSP54136 660 aaKnown RBP18.57■□□□□ 0.56
CUX1-214ENST00000550008 SSH1Q8WYL5 1049 aa18.57■□□□□ 0.56
CUX1-214ENST00000550008 GOLGA6L4A6NEF3 574 aa18.56■□□□□ 0.56
CUX1-214ENST00000550008 TARBP1Q13395 1621 aaKnown RBP18.56■□□□□ 0.56
CUX1-214ENST00000550008 CARD14Q9BXL6 1004 aa18.56■□□□□ 0.56
CUX1-214ENST00000550008 SLC4A2P04920 1241 aa18.56■□□□□ 0.56
CUX1-214ENST00000550008 MVPQ14764 893 aaKnown RBP18.56■□□□□ 0.56
CUX1-214ENST00000550008 DNTTIP2Q5QJE6 756 aaKnown RBP18.56■□□□□ 0.56
CUX1-214ENST00000550008 NFKBIBQ15653 356 aa18.55■□□□□ 0.56
CUX1-214ENST00000550008 TMEM57Q8N5G2 664 aa18.55■□□□□ 0.56
CUX1-214ENST00000550008 KDM6BO15054 1643 aa18.55■□□□□ 0.56
CUX1-214ENST00000550008 DNMT1P26358 1616 aaKnown RBP18.55■□□□□ 0.56
CUX1-214ENST00000550008 GORABQ5T7V8 394 aa18.55■□□□□ 0.56
CUX1-214ENST00000550008 MCM10Q7L590 875 aa18.55■□□□□ 0.56
CUX1-214ENST00000550008 THEMISQ8N1K5 641 aaPredicted RBP18.55■□□□□ 0.56
CUX1-214ENST00000550008 DENND4BO75064 1496 aaPredicted RBP18.55■□□□□ 0.56
CUX1-214ENST00000550008 TEX14Q8IWB6 1497 aa18.54■□□□□ 0.56
CUX1-214ENST00000550008 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.54■□□□□ 0.56
CUX1-214ENST00000550008 L1TD1Q5T7N2 865 aaKnown RBP18.53■□□□□ 0.56
CUX1-214ENST00000550008 ZNF692Q9BU19 519 aaPredicted RBP18.53■□□□□ 0.56
CUX1-214ENST00000550008 CEP170Q5SW79 1584 aa18.53■□□□□ 0.56
CUX1-214ENST00000550008 ZRSR1Q15695 479 aaKnown RBP18.53■□□□□ 0.56
CUX1-214ENST00000550008 CHMP4AQ9BY43 222 aa18.53■□□□□ 0.56
CUX1-214ENST00000550008 FCHSD2O94868 740 aa18.53■□□□□ 0.56
CUX1-214ENST00000550008 ANO2Q9NQ90 1003 aa18.53■□□□□ 0.56
CUX1-214ENST00000550008 ST18O60284 1047 aa18.52■□□□□ 0.56
CUX1-214ENST00000550008 TAF7LQ5H9L4 462 aa18.52■□□□□ 0.56
CUX1-214ENST00000550008 DUOX2Q9NRD8 1548 aa18.52■□□□□ 0.56
CUX1-214ENST00000550008 USP35Q9P2H5 1018 aa18.52■□□□□ 0.56
CUX1-214ENST00000550008 GSE1Q14687 1217 aa18.52■□□□□ 0.55
CUX1-214ENST00000550008 PARD3Q8TEW0 1356 aa18.51■□□□□ 0.55
CUX1-214ENST00000550008 PROSER2Q86WR7 435 aaPredicted RBP18.51■□□□□ 0.55
CUX1-214ENST00000550008 GOLGA6L3A6NEY3 463 aa18.5■□□□□ 0.55
CUX1-214ENST00000550008 NFE2L2Q16236 605 aa18.5■□□□□ 0.55
CUX1-214ENST00000550008 RAPGEF4Q8WZA2 1011 aa18.5■□□□□ 0.55
CUX1-214ENST00000550008 FRAT2O75474 233 aaPredicted RBP18.5■□□□□ 0.55
CUX1-214ENST00000550008 TTC5Q8N0Z6 440 aa18.5■□□□□ 0.55
CUX1-214ENST00000550008 WDR7Q9Y4E6 1490 aa18.5■□□□□ 0.55
CUX1-214ENST00000550008 GPATCH3Q96I76 525 aa18.49■□□□□ 0.55
CUX1-214ENST00000550008 EVA1CP58658 441 aa18.49■□□□□ 0.55
CUX1-214ENST00000550008 ZRANB1Q9UGI0 708 aa18.49■□□□□ 0.55
CUX1-214ENST00000550008 A2MP01023 1474 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 144 ms