RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 TCOF1Q13428 1488 aaKnown RBP20.21■□□□□ 0.83
CUX1-213ENST00000549414 GOLGA6L4A6NEF3 574 aa20.21■□□□□ 0.83
CUX1-213ENST00000549414 AEBP2Q6ZN18 517 aaPredicted RBP20.21■□□□□ 0.83
CUX1-213ENST00000549414 PDZRN3Q9UPQ7 1066 aa20.21■□□□□ 0.83
CUX1-213ENST00000549414 FANCAO15360 1455 aa20.21■□□□□ 0.83
CUX1-213ENST00000549414 SULT6B1Q6IMI4 303 aa20.2■□□□□ 0.82
CUX1-213ENST00000549414 RPGRIP1LQ68CZ1 1315 aa20.2■□□□□ 0.82
CUX1-213ENST00000549414 PDE3AQ14432 1141 aa20.19■□□□□ 0.82
CUX1-213ENST00000549414 C1orf141Q5JVX7 400 aa20.19■□□□□ 0.82
CUX1-213ENST00000549414 NOB1Q9ULX3 412 aaKnown RBP20.19■□□□□ 0.82
CUX1-213ENST00000549414 THUMPD2Q9BTF0 503 aaKnown RBP20.19■□□□□ 0.82
CUX1-213ENST00000549414 BACH2Q9BYV9 841 aa20.18■□□□□ 0.82
CUX1-213ENST00000549414 SYCP2Q9BX26 1530 aa20.18■□□□□ 0.82
CUX1-213ENST00000549414 EVA1CP58658 441 aa20.18■□□□□ 0.82
CUX1-213ENST00000549414 CHMP4AQ9BY43 222 aa20.18■□□□□ 0.82
CUX1-213ENST00000549414 FOXD4L6Q3SYB3 417 aaPredicted RBP20.17■□□□□ 0.82
CUX1-213ENST00000549414 FOXD4L3Q6VB84 417 aaPredicted RBP20.17■□□□□ 0.82
CUX1-213ENST00000549414 DISP1Q96F81 1524 aa20.17■□□□□ 0.82
CUX1-213ENST00000549414 NOS1P29475 1434 aa20.16■□□□□ 0.82
CUX1-213ENST00000549414 TWISTNBQ3B726 338 aaPredicted RBP20.16■□□□□ 0.82
CUX1-213ENST00000549414 ABTB2Q8N961 1025 aa20.15■□□□□ 0.82
CUX1-213ENST00000549414 RTEL1-TNFRSF6BF6WH68 1400 aa20.15■□□□□ 0.82
CUX1-213ENST00000549414 TRAPPC8Q9Y2L5 1435 aa20.14■□□□□ 0.82
CUX1-213ENST00000549414 USP35Q9P2H5 1018 aa20.14■□□□□ 0.82
CUX1-213ENST00000549414 C22orf23Q9BZE7 217 aa20.14■□□□□ 0.81
CUX1-213ENST00000549414 WDR63Q8IWG1 891 aa20.14■□□□□ 0.81
CUX1-213ENST00000549414 GOLGA6L3A6NEY3 463 aa20.13■□□□□ 0.81
CUX1-213ENST00000549414 ST18O60284 1047 aa20.13■□□□□ 0.81
CUX1-213ENST00000549414 TMPOP42166 694 aaKnown RBP20.12■□□□□ 0.81
CUX1-213ENST00000549414 GORABQ5T7V8 394 aa20.12■□□□□ 0.81
CUX1-213ENST00000549414 DHX29Q7Z478 1369 aaKnown RBP20.12■□□□□ 0.81
CUX1-213ENST00000549414 C9orf78Q9NZ63 289 aaPredicted RBP20.12■□□□□ 0.81
CUX1-213ENST00000549414 PLCH2O75038 1416 aa20.12■□□□□ 0.81
CUX1-213ENST00000549414 GSE1Q14687 1217 aa20.12■□□□□ 0.81
CUX1-213ENST00000549414 SYTL4Q96C24 671 aaPredicted RBP20.12■□□□□ 0.81
CUX1-213ENST00000549414 MAGI3Q5TCQ9 1506 aa20.11■□□□□ 0.81
CUX1-213ENST00000549414 GPATCH3Q96I76 525 aa20.11■□□□□ 0.81
CUX1-213ENST00000549414 FBLN1P23142 703 aa20.11■□□□□ 0.81
CUX1-213ENST00000549414 SCAF11Q99590 1463 aaKnown RBP20.11■□□□□ 0.81
CUX1-213ENST00000549414 EIF4G3O43432 1585 aaKnown RBP20.11■□□□□ 0.81
CUX1-213ENST00000549414 NFKBIBQ15653 356 aa20.1■□□□□ 0.81
CUX1-213ENST00000549414 TESK2Q96S53 571 aa20.1■□□□□ 0.81
CUX1-213ENST00000549414 ATAD2Q6PL18 1390 aa20.1■□□□□ 0.81
CUX1-213ENST00000549414 RALGAPBQ86X10 1494 aa20.1■□□□□ 0.81
CUX1-213ENST00000549414 DUSP27Q5VZP5 1158 aa20.1■□□□□ 0.81
CUX1-213ENST00000549414 ATF7IPQ6VMQ6 1270 aa20.1■□□□□ 0.81
CUX1-213ENST00000549414 ISY1Q9ULR0 285 aaKnown RBP20.1■□□□□ 0.81
CUX1-213ENST00000549414 PZPP20742 1482 aa20.1■□□□□ 0.81
CUX1-213ENST00000549414 MSH5O43196 834 aa20.1■□□□□ 0.81
CUX1-213ENST00000549414 GTF2E1P29083 439 aaPredicted RBP20.1■□□□□ 0.81
CUX1-213ENST00000549414 NUDT16Q96DE0 195 aaKnown RBP20.1■□□□□ 0.81
CUX1-213ENST00000549414 PRAG1Q86YV5 1406 aa20.09■□□□□ 0.81
CUX1-213ENST00000549414 ATF3P18847 181 aa20.09■□□□□ 0.81
CUX1-213ENST00000549414 TAF7LQ5H9L4 462 aa20.09■□□□□ 0.81
CUX1-213ENST00000549414 ESCO1Q5FWF5 840 aa20.08■□□□□ 0.81
CUX1-213ENST00000549414 ZNF428Q96B54 188 aa20.08■□□□□ 0.81
CUX1-213ENST00000549414 HDAC5Q9UQL6 1122 aa20.08■□□□□ 0.81
CUX1-213ENST00000549414 FAM135AQ9P2D6 1515 aa20.08■□□□□ 0.81
CUX1-213ENST00000549414 ABCA5Q8WWZ7 1642 aa20.08■□□□□ 0.81
CUX1-213ENST00000549414 CCDC61Q9Y6R9 512 aa20.08■□□□□ 0.81
CUX1-213ENST00000549414 DCTN1Q14203 1278 aa20.08■□□□□ 0.8
CUX1-213ENST00000549414 NME9Q86XW9 330 aa20.08■□□□□ 0.8
CUX1-213ENST00000549414 MVPQ14764 893 aaKnown RBP20.07■□□□□ 0.8
CUX1-213ENST00000549414 AMER1Q5JTC6 1135 aaPredicted RBP20.07■□□□□ 0.8
CUX1-213ENST00000549414 C14orf93Q9H972 538 aaKnown RBP20.07■□□□□ 0.8
CUX1-213ENST00000549414 AIMP1Q12904 312 aaKnown RBP20.07■□□□□ 0.8
CUX1-213ENST00000549414 ANO2Q9NQ90 1003 aa20.07■□□□□ 0.8
CUX1-213ENST00000549414 ITSN2Q9NZM3 1697 aa20.07■□□□□ 0.8
CUX1-213ENST00000549414 NLRP2Q9NX02 1062 aa20.06■□□□□ 0.8
CUX1-213ENST00000549414 EMILIN1Q9Y6C2 1016 aa20.06■□□□□ 0.8
CUX1-213ENST00000549414 KDM5BQ9UGL1 1544 aa20.06■□□□□ 0.8
CUX1-213ENST00000549414 AAMPQ13685 434 aa20.06■□□□□ 0.8
CUX1-213ENST00000549414 CEBPAP49715 358 aaPredicted RBP20.05■□□□□ 0.8
CUX1-213ENST00000549414 SLC4A2P04920 1241 aa20.05■□□□□ 0.8
CUX1-213ENST00000549414 RARSP54136 660 aaKnown RBP20.05■□□□□ 0.8
CUX1-213ENST00000549414 DDX49Q9Y6V7 483 aaKnown RBP20.04■□□□□ 0.8
CUX1-213ENST00000549414 PROSER2Q86WR7 435 aaPredicted RBP20.04■□□□□ 0.8
CUX1-213ENST00000549414 ZNF692Q9BU19 519 aaPredicted RBP20.04■□□□□ 0.8
CUX1-213ENST00000549414 MSNP26038 577 aaKnown RBP20.04■□□□□ 0.8
CUX1-213ENST00000549414 TTC5Q8N0Z6 440 aa20.04■□□□□ 0.8
CUX1-213ENST00000549414 SSH1Q8WYL5 1049 aa20.04■□□□□ 0.8
CUX1-213ENST00000549414 FCHSD2O94868 740 aa20.03■□□□□ 0.8
CUX1-213ENST00000549414 TMEM57Q8N5G2 664 aa20.03■□□□□ 0.8
CUX1-213ENST00000549414 MIS18AQ9NYP9 233 aa20.03■□□□□ 0.8
CUX1-213ENST00000549414 REC8O95072 547 aa20.03■□□□□ 0.8
CUX1-213ENST00000549414 RBM33Q96EV2 1170 aaKnown RBP20.02■□□□□ 0.8
CUX1-213ENST00000549414 THEMISQ8N1K5 641 aaPredicted RBP20.02■□□□□ 0.8
CUX1-213ENST00000549414 SAMD9Q5K651 1589 aa20.02■□□□□ 0.8
CUX1-213ENST00000549414 ASXL2Q76L83 1435 aa20.02■□□□□ 0.8
CUX1-213ENST00000549414 HSP90B1P14625 803 aaKnown RBP20.02■□□□□ 0.8
CUX1-213ENST00000549414 XPCQ01831 940 aaPredicted RBP20.02■□□□□ 0.79
CUX1-213ENST00000549414 NEXNQ0ZGT2 675 aa20.02■□□□□ 0.79
CUX1-213ENST00000549414 FRAT2O75474 233 aaPredicted RBP20.01■□□□□ 0.79
CUX1-213ENST00000549414 RAPGEF4Q8WZA2 1011 aa20.01■□□□□ 0.79
CUX1-213ENST00000549414 CHMP5Q9NZZ3 219 aa20.01■□□□□ 0.79
CUX1-213ENST00000549414 DIAPH3Q9NSV4 1193 aa20.01■□□□□ 0.79
CUX1-213ENST00000549414 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.01■□□□□ 0.79
CUX1-213ENST00000549414 NUP160Q12769 1436 aa20■□□□□ 0.79
CUX1-213ENST00000549414 GLIPR1L2Q4G1C9 344 aa20■□□□□ 0.79
CUX1-213ENST00000549414 NFE2L2Q16236 605 aa20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms