RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 SULF1Q8IWU6 871 aa9.82□□□□□ -0.84
VPS29-205ENST00000548539 SNIP1Q8TAD8 396 aaKnown RBP9.82□□□□□ -0.84
VPS29-205ENST00000548539 FECHP22830 423 aa9.81□□□□□ -0.84
VPS29-205ENST00000548539 MSS51Q4VC12 460 aa9.81□□□□□ -0.84
VPS29-205ENST00000548539 ATP13A2Q9NQ11 1180 aa9.81□□□□□ -0.84
VPS29-205ENST00000548539 SMPD1P17405 629 aa9.8□□□□□ -0.84
VPS29-205ENST00000548539 GRIPAP1Q4V328 841 aa9.8□□□□□ -0.84
VPS29-205ENST00000548539 RBM26Q5T8P6 1007 aaKnown RBP9.8□□□□□ -0.84
VPS29-205ENST00000548539 RNF19BQ6ZMZ0 732 aa9.79□□□□□ -0.84
VPS29-205ENST00000548539 NLRP7Q8WX94 980 aa9.79□□□□□ -0.84
VPS29-205ENST00000548539 SENP2Q9HC62 589 aa9.79□□□□□ -0.84
VPS29-205ENST00000548539 SNRPBP14678 240 aaKnown RBP9.78□□□□□ -0.84
VPS29-205ENST00000548539 TRIM32Q13049 653 aa9.78□□□□□ -0.84
VPS29-205ENST00000548539 SMYD5Q6GMV2 418 aa9.78□□□□□ -0.84
VPS29-205ENST00000548539 TERTO14746 1132 aaKnown RBP9.77□□□□□ -0.85
VPS29-205ENST00000548539 MRGPRX2Q96LB1 330 aa9.77□□□□□ -0.85
VPS29-205ENST00000548539 J3QL48 77 aa9.76□□□□□ -0.85
VPS29-205ENST00000548539 TRIM47Q96LD4 638 aa9.76□□□□□ -0.85
VPS29-205ENST00000548539 Q3C1V9 767 aa9.75□□□□□ -0.85
VPS29-205ENST00000548539 REPIN1Q9BWE0 567 aaKnown RBP9.74□□□□□ -0.85
VPS29-205ENST00000548539 TESPA1A2RU30 521 aaPredicted RBP9.73□□□□□ -0.85
VPS29-205ENST00000548539 MMP16P51512 607 aa9.73□□□□□ -0.85
VPS29-205ENST00000548539 KIFC2Q96AC6 838 aa9.73□□□□□ -0.85
VPS29-205ENST00000548539 HPS1Q92902 700 aa9.72□□□□□ -0.85
VPS29-205ENST00000548539 PHOX2BQ99453 314 aa9.71□□□□□ -0.86
VPS29-205ENST00000548539 GPR37O15354 613 aa9.7□□□□□ -0.86
VPS29-205ENST00000548539 LCE2CQ5TA81 110 aa9.7□□□□□ -0.86
VPS29-205ENST00000548539 CCDC24Q8N4L8 307 aa9.69□□□□□ -0.86
VPS29-205ENST00000548539 USB1Q9BQ65 265 aaKnown RBP9.69□□□□□ -0.86
VPS29-205ENST00000548539 RC3H1Q5TC82 1133 aaKnown RBP9.68□□□□□ -0.86
VPS29-205ENST00000548539 SLC16A10Q8TF71 515 aa9.68□□□□□ -0.86
VPS29-205ENST00000548539 FAM181BA6NEQ2 426 aa9.67□□□□□ -0.86
VPS29-205ENST00000548539 DXOO77932 396 aaKnown RBP9.67□□□□□ -0.86
VPS29-205ENST00000548539 VSIG10Q8N0Z9 540 aa9.67□□□□□ -0.86
VPS29-205ENST00000548539 KDM4AO75164 1064 aa9.65□□□□□ -0.86
VPS29-205ENST00000548539 WNT7BP56706 349 aa9.65□□□□□ -0.86
VPS29-205ENST00000548539 CD46P15529 392 aa9.64□□□□□ -0.87
VPS29-205ENST00000548539 ALDH1A1P00352 501 aa9.63□□□□□ -0.87
VPS29-205ENST00000548539 SKOR1P84550 965 aa9.63□□□□□ -0.87
VPS29-205ENST00000548539 NXF1Q9UBU9 619 aaKnown RBP9.63□□□□□ -0.87
VPS29-205ENST00000548539 KDM2AQ9Y2K7 1162 aa9.63□□□□□ -0.87
VPS29-205ENST00000548539 USP46P62068 366 aa9.6□□□□□ -0.87
VPS29-205ENST00000548539 GPIHBP1Q8IV16 184 aa9.6□□□□□ -0.87
VPS29-205ENST00000548539 IRF7Q92985 503 aa9.59□□□□□ -0.87
VPS29-205ENST00000548539 GMPRP36959 345 aa9.58□□□□□ -0.88
VPS29-205ENST00000548539 ZSCAN1Q8NBB4 408 aa9.58□□□□□ -0.88
VPS29-205ENST00000548539 HLA-CQ95604 372 aa9.58□□□□□ -0.88
VPS29-205ENST00000548539 CAPN5O15484 640 aaPredicted RBP9.57□□□□□ -0.88
VPS29-205ENST00000548539 NPAS3Q8IXF0 933 aa9.57□□□□□ -0.88
VPS29-205ENST00000548539 WASF2Q9Y6W5 498 aa9.57□□□□□ -0.88
VPS29-205ENST00000548539 LOC100996750A0A140TA64 210 aa9.56□□□□□ -0.88
VPS29-205ENST00000548539 BMP1P13497 986 aa9.56□□□□□ -0.88
VPS29-205ENST00000548539 JUNDP17535 347 aa9.56□□□□□ -0.88
VPS29-205ENST00000548539 EHBP1Q8NDI1 1231 aa9.56□□□□□ -0.88
VPS29-205ENST00000548539 KRTAP4-6Q9BYQ5 205 aa9.56□□□□□ -0.88
VPS29-205ENST00000548539 SIAH2O43255 324 aa9.55□□□□□ -0.88
VPS29-205ENST00000548539 HOXA2O43364 376 aa9.55□□□□□ -0.88
VPS29-205ENST00000548539 TRIM46Q7Z4K8 759 aa9.54□□□□□ -0.88
VPS29-205ENST00000548539 VEGFBP49765 207 aa9.53□□□□□ -0.88
VPS29-205ENST00000548539 MDM2Q00987 491 aaPredicted RBP9.53□□□□□ -0.88
VPS29-205ENST00000548539 BCANQ96GW7 911 aa9.53□□□□□ -0.88
VPS29-205ENST00000548539 GUCA2AQ02747 115 aa9.52□□□□□ -0.89
VPS29-205ENST00000548539 MAP2K5Q13163 448 aa9.52□□□□□ -0.89
VPS29-205ENST00000548539 NUDT12Q9BQG2 462 aa9.52□□□□□ -0.89
VPS29-205ENST00000548539 H3BM21 787 aa9.51□□□□□ -0.89
VPS29-205ENST00000548539 LORP23490 312 aaPredicted RBP9.51□□□□□ -0.89
VPS29-205ENST00000548539 PTCRAQ6ISU1 281 aaPredicted RBP9.51□□□□□ -0.89
VPS29-205ENST00000548539 SYMPKQ92797 1274 aaKnown RBP9.51□□□□□ -0.89
VPS29-205ENST00000548539 IRF6O14896 467 aa9.49□□□□□ -0.89
VPS29-205ENST00000548539 RETREG3Q86VR2 466 aa9.49□□□□□ -0.89
VPS29-205ENST00000548539 SH3BP2P78314 561 aa9.48□□□□□ -0.89
VPS29-205ENST00000548539 ZFP42Q96MM3 310 aa9.48□□□□□ -0.89
VPS29-205ENST00000548539 NUTM1Q86Y26 1132 aa9.47□□□□□ -0.89
VPS29-205ENST00000548539 ERBB4Q15303 1308 aa9.47□□□□□ -0.89
VPS29-205ENST00000548539 CCNYL3P0C7X3 344 aa9.45□□□□□ -0.9
VPS29-205ENST00000548539 MS4A1P11836 297 aa9.44□□□□□ -0.9
VPS29-205ENST00000548539 GPCPD1Q9NPB8 672 aa9.44□□□□□ -0.9
VPS29-205ENST00000548539 MINK1Q8N4C8 1332 aaPredicted RBP9.44□□□□□ -0.9
VPS29-205ENST00000548539 PLEKHG3A1L390 1219 aa9.43□□□□□ -0.9
VPS29-205ENST00000548539 C6orf229H3BNL8 230 aa9.43□□□□□ -0.9
VPS29-205ENST00000548539 FDX1P10109 184 aa9.43□□□□□ -0.9
VPS29-205ENST00000548539 CLCN1P35523 988 aa9.43□□□□□ -0.9
VPS29-205ENST00000548539 SCARF1Q14162 830 aa9.42□□□□□ -0.9
VPS29-205ENST00000548539 UNC93B1Q9H1C4 597 aa9.42□□□□□ -0.9
VPS29-205ENST00000548539 FAM217BQ9NTX9 383 aaPredicted RBP9.42□□□□□ -0.9
VPS29-205ENST00000548539 TLL2Q9Y6L7 1015 aa9.42□□□□□ -0.9
VPS29-205ENST00000548539 LINC01559Q495D7 138 aa9.41□□□□□ -0.9
VPS29-205ENST00000548539 MRPL14Q6P1L8 145 aaKnown RBP9.41□□□□□ -0.9
VPS29-205ENST00000548539 KRI1Q8N9T8 703 aaKnown RBP9.41□□□□□ -0.9
VPS29-205ENST00000548539 BAP1Q92560 729 aa9.41□□□□□ -0.9
VPS29-205ENST00000548539 NNTQ13423 1086 aa9.4□□□□□ -0.9
VPS29-205ENST00000548539 EVA1BQ9NVM1 165 aa9.4□□□□□ -0.9
VPS29-205ENST00000548539 TULP1O00294 542 aaPredicted RBP9.39□□□□□ -0.91
VPS29-205ENST00000548539 VARSP26640 1264 aaKnown RBP9.39□□□□□ -0.91
VPS29-205ENST00000548539 PTPRNQ16849 979 aa9.39□□□□□ -0.91
VPS29-205ENST00000548539 CCDC102AQ96A19 550 aa9.39□□□□□ -0.91
VPS29-205ENST00000548539 PURBQ96QR8 312 aaKnown RBP9.39□□□□□ -0.91
VPS29-205ENST00000548539 PCDHGC3Q9UN70 934 aa9.39□□□□□ -0.91
VPS29-205ENST00000548539 PRKCSHP14314 528 aaPredicted RBP9.38□□□□□ -0.91
VPS29-205ENST00000548539 MPNDQ8N594 471 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms