RNA–Protein interactions for RNA: ENST00000547823.1

DEPDC4-204, Transcript of DEP domain containing 4, humanhuman

TSL 3

Gene DEPDC4, Length 320 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-204ENST00000547823 STK17AQ9UEE5 414 aa7.02□□□□□ -1.29
DEPDC4-204ENST00000547823 RBM26Q5T8P6 1007 aaKnown RBP7.01□□□□□ -1.29
DEPDC4-204ENST00000547823 GMPR2Q9P2T1 348 aaKnown RBP7.01□□□□□ -1.29
DEPDC4-204ENST00000547823 GPR37O15354 613 aa7□□□□□ -1.29
DEPDC4-204ENST00000547823 WIPF1O43516 503 aa7□□□□□ -1.29
DEPDC4-204ENST00000547823 MMP16P51512 607 aa7□□□□□ -1.29
DEPDC4-204ENST00000547823 TRIM32Q13049 653 aa7□□□□□ -1.29
DEPDC4-204ENST00000547823 KIFC2Q96AC6 838 aa7□□□□□ -1.29
DEPDC4-204ENST00000547823 FECHP22830 423 aa6.98□□□□□ -1.29
DEPDC4-204ENST00000547823 USP46P62068 366 aa6.98□□□□□ -1.29
DEPDC4-204ENST00000547823 PRDM9Q9NQV7 894 aa6.98□□□□□ -1.29
DEPDC4-204ENST00000547823 RNF19BQ6ZMZ0 732 aa6.97□□□□□ -1.29
DEPDC4-204ENST00000547823 GPIHBP1Q8IV16 184 aa6.97□□□□□ -1.29
DEPDC4-204ENST00000547823 ATP13A2Q9NQ11 1180 aa6.97□□□□□ -1.29
DEPDC4-204ENST00000547823 SMPD1P17405 629 aa6.96□□□□□ -1.3
DEPDC4-204ENST00000547823 WNT7BP56706 349 aa6.96□□□□□ -1.3
DEPDC4-204ENST00000547823 NFX1Q12986 1120 aaKnown RBP6.96□□□□□ -1.3
DEPDC4-204ENST00000547823 TRIM47Q96LD4 638 aa6.96□□□□□ -1.3
DEPDC4-204ENST00000547823 USB1Q9BQ65 265 aaKnown RBP6.96□□□□□ -1.3
DEPDC4-204ENST00000547823 DACH1Q9UI36 760 aa6.96□□□□□ -1.3
DEPDC4-204ENST00000547823 DXOO77932 396 aaKnown RBP6.95□□□□□ -1.3
DEPDC4-204ENST00000547823 CD46P15529 392 aa6.95□□□□□ -1.3
DEPDC4-204ENST00000547823 KDM4AO75164 1064 aa6.94□□□□□ -1.3
DEPDC4-204ENST00000547823 MRGPRX2Q96LB1 330 aa6.94□□□□□ -1.3
DEPDC4-204ENST00000547823 FAM181BA6NEQ2 426 aa6.93□□□□□ -1.3
DEPDC4-204ENST00000547823 TULP1O00294 542 aaPredicted RBP6.93□□□□□ -1.3
DEPDC4-204ENST00000547823 TERTO14746 1132 aaKnown RBP6.93□□□□□ -1.3
DEPDC4-204ENST00000547823 MAP2K5Q13163 448 aa6.92□□□□□ -1.3
DEPDC4-204ENST00000547823 PHOX2BQ99453 314 aa6.92□□□□□ -1.3
DEPDC4-204ENST00000547823 SLC16A10Q8TF71 515 aa6.91□□□□□ -1.3
DEPDC4-204ENST00000547823 NLRP7Q8WX94 980 aa6.91□□□□□ -1.3
DEPDC4-204ENST00000547823 RC3H1Q5TC82 1133 aaKnown RBP6.9□□□□□ -1.3
DEPDC4-204ENST00000547823 NPAS3Q8IXF0 933 aa6.9□□□□□ -1.3
DEPDC4-204ENST00000547823 J3QL48 77 aa6.89□□□□□ -1.31
DEPDC4-204ENST00000547823 CCDC24Q8N4L8 307 aa6.89□□□□□ -1.31
DEPDC4-204ENST00000547823 SNRPBP14678 240 aaKnown RBP6.88□□□□□ -1.31
DEPDC4-204ENST00000547823 JUNDP17535 347 aa6.88□□□□□ -1.31
DEPDC4-204ENST00000547823 HOXA2O43364 376 aa6.87□□□□□ -1.31
DEPDC4-204ENST00000547823 HPS1Q92902 700 aa6.87□□□□□ -1.31
DEPDC4-204ENST00000547823 MINK1Q8N4C8 1332 aaPredicted RBP6.86□□□□□ -1.31
DEPDC4-204ENST00000547823 CLCN1P35523 988 aa6.86□□□□□ -1.31
DEPDC4-204ENST00000547823 RETREG3Q86VR2 466 aa6.86□□□□□ -1.31
DEPDC4-204ENST00000547823 IRF6O14896 467 aa6.85□□□□□ -1.31
DEPDC4-204ENST00000547823 ALDH1A1P00352 501 aa6.85□□□□□ -1.31
DEPDC4-204ENST00000547823 PLCB2Q00722 1185 aa6.85□□□□□ -1.31
DEPDC4-204ENST00000547823 NXF1Q9UBU9 619 aaKnown RBP6.85□□□□□ -1.31
DEPDC4-204ENST00000547823 WASF2Q9Y6W5 498 aa6.85□□□□□ -1.31
DEPDC4-204ENST00000547823 SKOR1P84550 965 aa6.84□□□□□ -1.31
DEPDC4-204ENST00000547823 MDM2Q00987 491 aaPredicted RBP6.84□□□□□ -1.31
DEPDC4-204ENST00000547823 EHBP1Q8NDI1 1231 aa6.84□□□□□ -1.31
DEPDC4-204ENST00000547823 IRF7Q92985 503 aa6.84□□□□□ -1.31
DEPDC4-204ENST00000547823 NUDT12Q9BQG2 462 aa6.84□□□□□ -1.31
DEPDC4-204ENST00000547823 GPCPD1Q9NPB8 672 aa6.84□□□□□ -1.31
DEPDC4-204ENST00000547823 NUTM1Q86Y26 1132 aa6.83□□□□□ -1.32
DEPDC4-204ENST00000547823 CAPN5O15484 640 aaPredicted RBP6.82□□□□□ -1.32
DEPDC4-204ENST00000547823 PLEKHG3A1L390 1219 aa6.81□□□□□ -1.32
DEPDC4-204ENST00000547823 KRI1Q8N9T8 703 aaKnown RBP6.81□□□□□ -1.32
DEPDC4-204ENST00000547823 SIAH2O43255 324 aa6.8□□□□□ -1.32
DEPDC4-204ENST00000547823 CCNYL3P0C7X3 344 aa6.8□□□□□ -1.32
DEPDC4-204ENST00000547823 MPNDQ8N594 471 aa6.8□□□□□ -1.32
DEPDC4-204ENST00000547823 FAM217BQ9NTX9 383 aaPredicted RBP6.8□□□□□ -1.32
DEPDC4-204ENST00000547823 MS4A1P11836 297 aa6.79□□□□□ -1.32
DEPDC4-204ENST00000547823 PTPRNQ16849 979 aa6.79□□□□□ -1.32
DEPDC4-204ENST00000547823 ZSCAN1Q8NBB4 408 aa6.79□□□□□ -1.32
DEPDC4-204ENST00000547823 SPDYE5A6NIY4 337 aa6.78□□□□□ -1.32
DEPDC4-204ENST00000547823 H3BM21 787 aa6.78□□□□□ -1.32
DEPDC4-204ENST00000547823 FDX1P10109 184 aa6.78□□□□□ -1.32
DEPDC4-204ENST00000547823 LCE2CQ5TA81 110 aa6.78□□□□□ -1.32
DEPDC4-204ENST00000547823 HLA-CQ95604 372 aa6.78□□□□□ -1.32
DEPDC4-204ENST00000547823 CCDC102AQ96A19 550 aa6.78□□□□□ -1.32
DEPDC4-204ENST00000547823 C6orf229H3BNL8 230 aa6.77□□□□□ -1.33
DEPDC4-204ENST00000547823 VARSP26640 1264 aaKnown RBP6.77□□□□□ -1.33
DEPDC4-204ENST00000547823 TRIM46Q7Z4K8 759 aa6.77□□□□□ -1.33
DEPDC4-204ENST00000547823 BMP1P13497 986 aa6.76□□□□□ -1.33
DEPDC4-204ENST00000547823 SH3BP2P78314 561 aa6.76□□□□□ -1.33
DEPDC4-204ENST00000547823 SCARF1Q14162 830 aa6.76□□□□□ -1.33
DEPDC4-204ENST00000547823 DESI1Q6ICB0 168 aa6.76□□□□□ -1.33
DEPDC4-204ENST00000547823 GMPRP36959 345 aa6.75□□□□□ -1.33
DEPDC4-204ENST00000547823 GUCA2AQ02747 115 aa6.75□□□□□ -1.33
DEPDC4-204ENST00000547823 UNC93B1Q9H1C4 597 aa6.75□□□□□ -1.33
DEPDC4-204ENST00000547823 EVA1BQ9NVM1 165 aa6.75□□□□□ -1.33
DEPDC4-204ENST00000547823 PTCRAQ6ISU1 281 aaPredicted RBP6.74□□□□□ -1.33
DEPDC4-204ENST00000547823 SYMPKQ92797 1274 aaKnown RBP6.74□□□□□ -1.33
DEPDC4-204ENST00000547823 ADH1CP00326 375 aa6.73□□□□□ -1.33
DEPDC4-204ENST00000547823 KCNH2Q12809 1159 aa6.73□□□□□ -1.33
DEPDC4-204ENST00000547823 DIXDC1Q155Q3 683 aa6.73□□□□□ -1.33
DEPDC4-204ENST00000547823 ZNF511Q8NB15 262 aa6.73□□□□□ -1.33
DEPDC4-204ENST00000547823 GJA5P36382 358 aa6.72□□□□□ -1.33
DEPDC4-204ENST00000547823 NNTQ13423 1086 aa6.72□□□□□ -1.33
DEPDC4-204ENST00000547823 MRPL14Q6P1L8 145 aaKnown RBP6.72□□□□□ -1.33
DEPDC4-204ENST00000547823 FAM174AQ8TBP5 190 aa6.72□□□□□ -1.33
DEPDC4-204ENST00000547823 ZFP42Q96MM3 310 aa6.72□□□□□ -1.33
DEPDC4-204ENST00000547823 LOC100996750A0A140TA64 210 aa6.71□□□□□ -1.34
DEPDC4-204ENST00000547823 VSIG8P0DPA2 414 aa6.71□□□□□ -1.34
DEPDC4-204ENST00000547823 HAP1P54257 671 aaPredicted RBP6.71□□□□□ -1.34
DEPDC4-204ENST00000547823 MTMR2Q13614 643 aa6.71□□□□□ -1.34
DEPDC4-204ENST00000547823 KRTAP4-6Q9BYQ5 205 aa6.71□□□□□ -1.34
DEPDC4-204ENST00000547823 PCDHGC3Q9UN70 934 aa6.71□□□□□ -1.34
DEPDC4-204ENST00000547823 PRR7Q8TB68 274 aa6.7□□□□□ -1.34
DEPDC4-204ENST00000547823 BAP1Q92560 729 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms