RNA–Protein interactions for RNA: ENST00000546345.5

CCDC60-205, Transcript of coiled-coil domain containing 60, humanhuman

TSL 1 (best)

Gene CCDC60, Length 865 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60-205ENST00000546345 MAP3K9P80192 1104 aa11.22□□□□□ -0.61
CCDC60-205ENST00000546345 OXER1Q8TDS5 423 aa11.22□□□□□ -0.61
CCDC60-205ENST00000546345 ARIH1Q9Y4X5 557 aaPredicted RBP11.21□□□□□ -0.61
CCDC60-205ENST00000546345 RANGAP1P46060 587 aaPredicted RBP11.2□□□□□ -0.62
CCDC60-205ENST00000546345 LRRC7Q96NW7 1537 aa11.19□□□□□ -0.62
CCDC60-205ENST00000546345 DPYSL4O14531 572 aa11.19□□□□□ -0.62
CCDC60-205ENST00000546345 ZSWIM6Q9HCJ5 1215 aa11.19□□□□□ -0.62
CCDC60-205ENST00000546345 PCDHGA4Q9Y5G9 962 aa11.19□□□□□ -0.62
CCDC60-205ENST00000546345 MED14O60244 1454 aa11.19□□□□□ -0.62
CCDC60-205ENST00000546345 ARHGAP35Q9NRY4 1499 aa11.19□□□□□ -0.62
CCDC60-205ENST00000546345 TOM1O60784 492 aa11.18□□□□□ -0.62
CCDC60-205ENST00000546345 ESF1Q9H501 851 aaKnown RBP11.18□□□□□ -0.62
CCDC60-205ENST00000546345 CLIP1P30622 1438 aa11.18□□□□□ -0.62
CCDC60-205ENST00000546345 A2MP01023 1474 aa11.17□□□□□ -0.62
CCDC60-205ENST00000546345 FMN1Q68DA7 1419 aa11.17□□□□□ -0.62
CCDC60-205ENST00000546345 ARSIQ5FYB1 569 aa11.15□□□□□ -0.62
CCDC60-205ENST00000546345 FAM163AQ96GL9 167 aaPredicted RBP11.15□□□□□ -0.62
CCDC60-205ENST00000546345 MYT1LQ9UL68 1186 aa11.15□□□□□ -0.62
CCDC60-205ENST00000546345 SPDYE16A6NNV3 312 aaPredicted RBP11.14□□□□□ -0.63
CCDC60-205ENST00000546345 GPR153Q6NV75 609 aa11.14□□□□□ -0.63
CCDC60-205ENST00000546345 ROBO1Q9Y6N7 1651 aa11.14□□□□□ -0.63
CCDC60-205ENST00000546345 PZPP20742 1482 aa11.13□□□□□ -0.63
CCDC60-205ENST00000546345 UBR1Q8IWV7 1749 aa11.13□□□□□ -0.63
CCDC60-205ENST00000546345 NPHP4O75161 1426 aaPredicted RBP11.13□□□□□ -0.63
CCDC60-205ENST00000546345 POTEAQ6S8J7 498 aa11.13□□□□□ -0.63
CCDC60-205ENST00000546345 KDM5DQ9BY66 1539 aa11.13□□□□□ -0.63
CCDC60-205ENST00000546345 FAM135AQ9P2D6 1515 aa11.13□□□□□ -0.63
CCDC60-205ENST00000546345 UGGT1Q9NYU2 1555 aa11.12□□□□□ -0.63
CCDC60-205ENST00000546345 ZNF316A6NFI3 1004 aaPredicted RBP11.12□□□□□ -0.63
CCDC60-205ENST00000546345 EVI5O60447 810 aa11.12□□□□□ -0.63
CCDC60-205ENST00000546345 HOXB1P14653 301 aaPredicted RBP11.12□□□□□ -0.63
CCDC60-205ENST00000546345 EEA1Q15075 1411 aa11.11□□□□□ -0.63
CCDC60-205ENST00000546345 NBR1Q14596 966 aa11.11□□□□□ -0.63
CCDC60-205ENST00000546345 KHSRPQ92945 711 aaKnown RBP eCLIP11.11□□□□□ -0.63
CCDC60-205ENST00000546345 ST18O60284 1047 aa11.1□□□□□ -0.63
CCDC60-205ENST00000546345 PDIA6Q15084 440 aa11.1□□□□□ -0.63
CCDC60-205ENST00000546345 TNRQ92752 1358 aa11.1□□□□□ -0.63
CCDC60-205ENST00000546345 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.1□□□□□ -0.63
CCDC60-205ENST00000546345 CCDC18Q5T9S5 1454 aa11.09□□□□□ -0.63
CCDC60-205ENST00000546345 NUDT7P0C024 238 aa11.09□□□□□ -0.63
CCDC60-205ENST00000546345 GPATCH8Q9UKJ3 1502 aaKnown RBP11.09□□□□□ -0.63
CCDC60-205ENST00000546345 NLRP1Q9C000 1473 aa11.08□□□□□ -0.64
CCDC60-205ENST00000546345 CFAP65Q6ZU64 1925 aaKnown RBP11.08□□□□□ -0.64
CCDC60-205ENST00000546345 ANO8Q9HCE9 1232 aaPredicted RBP11.08□□□□□ -0.64
CCDC60-205ENST00000546345 PHLPP1O60346 1717 aa11.07□□□□□ -0.64
CCDC60-205ENST00000546345 BCANQ96GW7 911 aa11.07□□□□□ -0.64
CCDC60-205ENST00000546345 MAP3K1Q13233 1512 aa11.07□□□□□ -0.64
CCDC60-205ENST00000546345 SPAG9O60271 1321 aaKnown RBP11.07□□□□□ -0.64
CCDC60-205ENST00000546345 CEP152O94986 1710 aa11.06□□□□□ -0.64
CCDC60-205ENST00000546345 CDK11AQ9UQ88 783 aaPredicted RBP11.06□□□□□ -0.64
CCDC60-205ENST00000546345 KIAA1107Q9UPP5 1409 aa11.06□□□□□ -0.64
CCDC60-205ENST00000546345 TIAM1Q13009 1591 aa11.06□□□□□ -0.64
CCDC60-205ENST00000546345 SRCAPQ6ZRS2 3230 aa11.06□□□□□ -0.64
CCDC60-205ENST00000546345 SEMA3EO15041 775 aa11.05□□□□□ -0.64
CCDC60-205ENST00000546345 COL16A1Q07092 1604 aaPredicted RBP11.05□□□□□ -0.64
CCDC60-205ENST00000546345 FBXO31Q5XUX0 539 aaPredicted RBP11.04□□□□□ -0.64
CCDC60-205ENST00000546345 MROH1Q8NDA8 1641 aa11.04□□□□□ -0.64
CCDC60-205ENST00000546345 PLEKHH2Q8IVE3 1493 aa11.04□□□□□ -0.64
CCDC60-205ENST00000546345 CASKIN1Q8WXD9 1431 aa11.03□□□□□ -0.64
CCDC60-205ENST00000546345 PTGER2P43116 358 aa11.03□□□□□ -0.64
CCDC60-205ENST00000546345 GGT6Q6P531 493 aa11.03□□□□□ -0.64
CCDC60-205ENST00000546345 ATP1B4Q9UN42 357 aaPredicted RBP11.03□□□□□ -0.64
CCDC60-205ENST00000546345 LRP6O75581 1613 aa11.02□□□□□ -0.64
CCDC60-205ENST00000546345 MBD5Q9P267 1494 aa11.02□□□□□ -0.65
CCDC60-205ENST00000546345 FAM135BQ49AJ0 1406 aa11.01□□□□□ -0.65
CCDC60-205ENST00000546345 FYCO1Q9BQS8 1478 aa11.01□□□□□ -0.65
CCDC60-205ENST00000546345 LHX6Q9UPM6 363 aa11.01□□□□□ -0.65
CCDC60-205ENST00000546345 SHPRHQ149N8 1683 aa11.01□□□□□ -0.65
CCDC60-205ENST00000546345 MIA2Q96PC5 1412 aa11.01□□□□□ -0.65
CCDC60-205ENST00000546345 NCOA2Q15596 1464 aa11□□□□□ -0.65
CCDC60-205ENST00000546345 ARHGAP23Q9P227 1491 aa11□□□□□ -0.65
CCDC60-205ENST00000546345 ABCC3O15438 1527 aa11□□□□□ -0.65
CCDC60-205ENST00000546345 SLIT1O75093 1534 aa11□□□□□ -0.65
CCDC60-205ENST00000546345 NWD1Q149M9 1564 aa11□□□□□ -0.65
CCDC60-205ENST00000546345 TESPA1A2RU30 521 aaPredicted RBP11□□□□□ -0.65
CCDC60-205ENST00000546345 HNRNPMP52272 730 aaKnown RBP eCLIP11□□□□□ -0.65
CCDC60-205ENST00000546345 EMP3P54852 163 aa11□□□□□ -0.65
CCDC60-205ENST00000546345 DDX12PQ92771 950 aa11□□□□□ -0.65
CCDC60-205ENST00000546345 MARVELD3Q96A59 401 aa11□□□□□ -0.65
CCDC60-205ENST00000546345 ERVK-7P63135 1459 aa11□□□□□ -0.65
CCDC60-205ENST00000546345 SCAF11Q99590 1463 aaKnown RBP11□□□□□ -0.65
CCDC60-205ENST00000546345 GRXCR2A6NFK2 248 aa10.99□□□□□ -0.65
CCDC60-205ENST00000546345 LCE2DQ5TA82 110 aaPredicted RBP10.99□□□□□ -0.65
CCDC60-205ENST00000546345 SMYD5Q6GMV2 418 aa10.99□□□□□ -0.65
CCDC60-205ENST00000546345 ANKLE2Q86XL3 938 aa10.99□□□□□ -0.65
CCDC60-205ENST00000546345 MLLT3P42568 568 aaPredicted RBP10.98□□□□□ -0.65
CCDC60-205ENST00000546345 ERBB3P21860 1342 aa10.98□□□□□ -0.65
CCDC60-205ENST00000546345 RTEL1-TNFRSF6BF6WH68 1400 aa10.98□□□□□ -0.65
CCDC60-205ENST00000546345 CAMSAP2Q08AD1 1489 aa10.98□□□□□ -0.65
CCDC60-205ENST00000546345 PIK3C2BO00750 1634 aa10.98□□□□□ -0.65
CCDC60-205ENST00000546345 EIF2AK4Q9P2K8 1649 aaKnown RBP10.98□□□□□ -0.65
CCDC60-205ENST00000546345 PSDA5PKW4 1024 aaPredicted RBP10.97□□□□□ -0.65
CCDC60-205ENST00000546345 PHF14O94880 888 aa10.97□□□□□ -0.65
CCDC60-205ENST00000546345 ZNF777Q9ULD5 760 aaPredicted RBP10.97□□□□□ -0.65
CCDC60-205ENST00000546345 KDM5AP29375 1690 aaKnown RBP10.97□□□□□ -0.65
CCDC60-205ENST00000546345 LRRC9Q6ZRR7 1453 aa10.96□□□□□ -0.65
CCDC60-205ENST00000546345 DHX29Q7Z478 1369 aaKnown RBP10.96□□□□□ -0.65
CCDC60-205ENST00000546345 TULP1O00294 542 aaPredicted RBP10.96□□□□□ -0.65
CCDC60-205ENST00000546345 ZNF454Q8N9F8 522 aa10.96□□□□□ -0.65
CCDC60-205ENST00000546345 FOSBP53539 338 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms