RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.34■■□□□ 1.17
PRPF40A-212ENST00000545856 EVC2Q86UK5 1308 aa22.33■■□□□ 1.17
PRPF40A-212ENST00000545856 ADGRL3Q9HAR2 1447 aa22.33■■□□□ 1.16
PRPF40A-212ENST00000545856 NALCNQ8IZF0 1738 aa22.32■■□□□ 1.16
PRPF40A-212ENST00000545856 TULP4Q9NRJ4 1543 aa22.32■■□□□ 1.16
PRPF40A-212ENST00000545856 DCCP43146 1447 aa22.31■■□□□ 1.16
PRPF40A-212ENST00000545856 CCDC7Q96M83 1385 aa22.3■■□□□ 1.16
PRPF40A-212ENST00000545856 PLEKHH1Q9ULM0 1364 aa22.3■■□□□ 1.16
PRPF40A-212ENST00000545856 NINLQ9Y2I6 1382 aa22.3■■□□□ 1.16
PRPF40A-212ENST00000545856 ITSN1Q15811 1721 aa22.3■■□□□ 1.16
PRPF40A-212ENST00000545856 ATAD2Q6PL18 1390 aa22.28■■□□□ 1.16
PRPF40A-212ENST00000545856 FMN2Q9NZ56 1722 aa22.27■■□□□ 1.16
PRPF40A-212ENST00000545856 WAPLQ7Z5K2 1190 aa22.27■■□□□ 1.16
PRPF40A-212ENST00000545856 DISP3Q9P2K9 1392 aa22.27■■□□□ 1.16
PRPF40A-212ENST00000545856 XIRP1Q702N8 1843 aaKnown RBP22.27■■□□□ 1.15
PRPF40A-212ENST00000545856 KIF7Q2M1P5 1343 aa22.25■■□□□ 1.15
PRPF40A-212ENST00000545856 ANKARQ7Z5J8 1434 aa22.25■■□□□ 1.15
PRPF40A-212ENST00000545856 LRRC7Q96NW7 1537 aa22.25■■□□□ 1.15
PRPF40A-212ENST00000545856 PROSER2Q86WR7 435 aaPredicted RBP22.25■■□□□ 1.15
PRPF40A-212ENST00000545856 HIRIP3Q9BW71 556 aaPredicted RBP22.25■■□□□ 1.15
PRPF40A-212ENST00000545856 WASHC2AQ641Q2 1341 aa22.24■■□□□ 1.15
PRPF40A-212ENST00000545856 WASLO00401 505 aaPredicted RBP22.24■■□□□ 1.15
PRPF40A-212ENST00000545856 MYOM1P52179 1685 aa22.23■■□□□ 1.15
PRPF40A-212ENST00000545856 LTBP4Q8N2S1 1624 aa22.23■■□□□ 1.15
PRPF40A-212ENST00000545856 MINK1Q8N4C8 1332 aaPredicted RBP22.23■■□□□ 1.15
PRPF40A-212ENST00000545856 TOPAZ1Q8N9V7 1692 aa22.23■■□□□ 1.15
PRPF40A-212ENST00000545856 TMEM94Q12767 1356 aa22.22■■□□□ 1.15
PRPF40A-212ENST00000545856 ZNF335Q9H4Z2 1342 aaPredicted RBP22.22■■□□□ 1.15
PRPF40A-212ENST00000545856 SAFB2Q14151 953 aaKnown RBP eCLIP22.21■■□□□ 1.15
PRPF40A-212ENST00000545856 C19orf44Q9H6X5 657 aa22.2■■□□□ 1.14
PRPF40A-212ENST00000545856 ATP7BP35670 1465 aa22.19■■□□□ 1.14
PRPF40A-212ENST00000545856 IQSEC2Q5JU85 1478 aa22.19■■□□□ 1.14
PRPF40A-212ENST00000545856 MSH6P52701 1360 aa22.18■■□□□ 1.14
PRPF40A-212ENST00000545856 C11orf95C9JLR9 678 aaPredicted RBP22.18■■□□□ 1.14
PRPF40A-212ENST00000545856 CDK19Q9BWU1 502 aa22.18■■□□□ 1.14
PRPF40A-212ENST00000545856 SRPK2P78362 688 aaKnown RBP22.16■■□□□ 1.14
PRPF40A-212ENST00000545856 USP32Q8NFA0 1604 aa22.16■■□□□ 1.14
PRPF40A-212ENST00000545856 C14orf37Q86TY3 774 aa22.14■■□□□ 1.14
PRPF40A-212ENST00000545856 KIF1AQ12756 1690 aa22.14■■□□□ 1.14
PRPF40A-212ENST00000545856 CADPS2Q86UW7 1296 aa22.13■■□□□ 1.13
PRPF40A-212ENST00000545856 CCDC61Q9Y6R9 512 aa22.13■■□□□ 1.13
PRPF40A-212ENST00000545856 AKAP12Q02952 1782 aa22.11■■□□□ 1.13
PRPF40A-212ENST00000545856 RGPD8O14715 1765 aaPredicted RBP22.11■■□□□ 1.13
PRPF40A-212ENST00000545856 ANKRD36BQ8N2N9 1353 aa22.1■■□□□ 1.13
PRPF40A-212ENST00000545856 ATF3P18847 181 aa22.1■■□□□ 1.13
PRPF40A-212ENST00000545856 NUDT16Q96DE0 195 aaKnown RBP22.1■■□□□ 1.13
PRPF40A-212ENST00000545856 CABP2Q9NPB3 220 aa22.1■■□□□ 1.13
PRPF40A-212ENST00000545856 MON2Q7Z3U7 1717 aa22.09■■□□□ 1.13
PRPF40A-212ENST00000545856 PPIP5K1Q6PFW1 1433 aa22.09■■□□□ 1.13
PRPF40A-212ENST00000545856 BRD4O60885 1362 aaPredicted RBP22.08■■□□□ 1.13
PRPF40A-212ENST00000545856 PLEKHG3A1L390 1219 aa22.07■■□□□ 1.12
PRPF40A-212ENST00000545856 MST1RQ04912 1400 aa22.07■■□□□ 1.12
PRPF40A-212ENST00000545856 TERF2IPQ9NYB0 399 aa22.07■■□□□ 1.12
PRPF40A-212ENST00000545856 POLR3GLQ9BT43 218 aa22.05■■□□□ 1.12
PRPF40A-212ENST00000545856 C1orf167Q5SNV9 1468 aa22.05■■□□□ 1.12
PRPF40A-212ENST00000545856 PRR36Q9H6K5 1346 aa22.05■■□□□ 1.12
PRPF40A-212ENST00000545856 POLR3AO14802 1390 aaPredicted RBP22.05■■□□□ 1.12
PRPF40A-212ENST00000545856 CPSF1Q10570 1443 aaKnown RBP22.04■■□□□ 1.12
PRPF40A-212ENST00000545856 ZNF692Q9BU19 519 aaPredicted RBP22.03■■□□□ 1.12
PRPF40A-212ENST00000545856 CD163L1Q9NR16 1453 aa22.03■■□□□ 1.12
PRPF40A-212ENST00000545856 DDX10Q13206 875 aaKnown RBP22.02■■□□□ 1.12
PRPF40A-212ENST00000545856 HDGFL2Q7Z4V5 671 aaPredicted RBP22.02■■□□□ 1.12
PRPF40A-212ENST00000545856 NPC1L1Q9UHC9 1359 aa22.02■■□□□ 1.12
PRPF40A-212ENST00000545856 TMC1Q8TDI8 760 aa22.01■■□□□ 1.11
PRPF40A-212ENST00000545856 NRKQ7Z2Y5 1582 aa22.01■■□□□ 1.11
PRPF40A-212ENST00000545856 RBM33Q96EV2 1170 aaKnown RBP21.99■■□□□ 1.11
PRPF40A-212ENST00000545856 CABP1Q9NZU7 370 aa21.99■■□□□ 1.11
PRPF40A-212ENST00000545856 A0A1W2PP64 1363 aa21.99■■□□□ 1.11
PRPF40A-212ENST00000545856 KTN1Q86UP2 1357 aaKnown RBP21.99■■□□□ 1.11
PRPF40A-212ENST00000545856 EDC4Q6P2E9 1401 aaKnown RBP21.99■■□□□ 1.11
PRPF40A-212ENST00000545856 NSD2O96028 1365 aa21.99■■□□□ 1.11
PRPF40A-212ENST00000545856 SLC12A5Q9H2X9 1139 aa21.99■■□□□ 1.11
PRPF40A-212ENST00000545856 PANK3Q9H999 370 aa21.98■■□□□ 1.11
PRPF40A-212ENST00000545856 KIF20BQ96Q89 1820 aa21.97■■□□□ 1.11
PRPF40A-212ENST00000545856 ANKRD26Q9UPS8 1709 aa21.97■■□□□ 1.11
PRPF40A-212ENST00000545856 PHF8Q9UPP1 1060 aa21.97■■□□□ 1.11
PRPF40A-212ENST00000545856 PER1O15534 1290 aaPredicted RBP21.96■■□□□ 1.11
PRPF40A-212ENST00000545856 USP6P35125 1406 aa21.95■■□□□ 1.1
PRPF40A-212ENST00000545856 DIEXFQ68CQ4 756 aaKnown RBP21.95■■□□□ 1.1
PRPF40A-212ENST00000545856 KNSTRNQ9Y448 316 aa21.95■■□□□ 1.1
PRPF40A-212ENST00000545856 USP54Q70EL1 1684 aa21.94■■□□□ 1.1
PRPF40A-212ENST00000545856 NSD3Q9BZ95 1437 aa21.94■■□□□ 1.1
PRPF40A-212ENST00000545856 NHSL1Q5SYE7 1610 aa21.94■■□□□ 1.1
PRPF40A-212ENST00000545856 ACEP12821 1306 aa21.93■■□□□ 1.1
PRPF40A-212ENST00000545856 SLAIN2Q9P270 581 aa21.93■■□□□ 1.1
PRPF40A-212ENST00000545856 CGNL1Q0VF96 1302 aa21.92■■□□□ 1.1
PRPF40A-212ENST00000545856 ESCO1Q5FWF5 840 aa21.92■■□□□ 1.1
PRPF40A-212ENST00000545856 SSH2Q76I76 1423 aa21.92■■□□□ 1.1
PRPF40A-212ENST00000545856 TTC21AQ8NDW8 1320 aa21.91■■□□□ 1.1
PRPF40A-212ENST00000545856 NGDNQ8NEJ9 315 aaKnown RBP21.91■■□□□ 1.1
PRPF40A-212ENST00000545856 NPHP3Q7Z494 1330 aa21.91■■□□□ 1.1
PRPF40A-212ENST00000545856 NUTM2FA1L443 756 aa21.9■■□□□ 1.1
PRPF40A-212ENST00000545856 TOM1O60784 492 aa21.9■■□□□ 1.1
PRPF40A-212ENST00000545856 TRPM3Q9HCF6 1732 aaPredicted RBP21.9■■□□□ 1.1
PRPF40A-212ENST00000545856 ROBO1Q9Y6N7 1651 aa21.88■■□□□ 1.09
PRPF40A-212ENST00000545856 AHDC1Q5TGY3 1603 aaPredicted RBP21.88■■□□□ 1.09
PRPF40A-212ENST00000545856 CERKQ8TCT0 537 aa21.87■■□□□ 1.09
PRPF40A-212ENST00000545856 CARD14Q9BXL6 1004 aa21.87■■□□□ 1.09
PRPF40A-212ENST00000545856 AMER1Q5JTC6 1135 aaPredicted RBP21.87■■□□□ 1.09
PRPF40A-212ENST00000545856 SBNO1A3KN83 1393 aa21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms