RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 ABCA6Q8N139 1617 aa19.34■□□□□ 0.69
USP28-214ENST00000545540 STAC3Q96MF2 364 aa19.33■□□□□ 0.69
USP28-214ENST00000545540 CEP152O94986 1710 aa19.32■□□□□ 0.68
USP28-214ENST00000545540 GSE1Q14687 1217 aa19.32■□□□□ 0.68
USP28-214ENST00000545540 KDM5AP29375 1690 aaKnown RBP19.32■□□□□ 0.68
USP28-214ENST00000545540 USP19O94966 1318 aa19.32■□□□□ 0.68
USP28-214ENST00000545540 CGNL1Q0VF96 1302 aa19.32■□□□□ 0.68
USP28-214ENST00000545540 PDZRN3Q9UPQ7 1066 aa19.31■□□□□ 0.68
USP28-214ENST00000545540 NPC1L1Q9UHC9 1359 aa19.31■□□□□ 0.68
USP28-214ENST00000545540 PDE3AQ14432 1141 aa19.3■□□□□ 0.68
USP28-214ENST00000545540 USP35Q9P2H5 1018 aa19.3■□□□□ 0.68
USP28-214ENST00000545540 ANO8Q9HCE9 1232 aaPredicted RBP19.3■□□□□ 0.68
USP28-214ENST00000545540 CFAP53Q96M91 514 aa19.29■□□□□ 0.68
USP28-214ENST00000545540 EXOSC9Q06265 439 aaKnown RBP19.29■□□□□ 0.68
USP28-214ENST00000545540 NPATQ14207 1427 aa19.29■□□□□ 0.68
USP28-214ENST00000545540 IDI1Q13907 227 aa19.29■□□□□ 0.68
USP28-214ENST00000545540 FTSJ3Q8IY81 847 aaKnown RBP19.29■□□□□ 0.68
USP28-214ENST00000545540 TET3O43151 1660 aa19.29■□□□□ 0.68
USP28-214ENST00000545540 MAP3K4Q9Y6R4 1608 aa19.28■□□□□ 0.68
USP28-214ENST00000545540 POLR3AO14802 1390 aaPredicted RBP19.28■□□□□ 0.68
USP28-214ENST00000545540 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.28■□□□□ 0.68
USP28-214ENST00000545540 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.27■□□□□ 0.68
USP28-214ENST00000545540 UHRF1BP1LA0JNW5 1464 aa19.27■□□□□ 0.68
USP28-214ENST00000545540 SMC4Q9NTJ3 1288 aa19.27■□□□□ 0.68
USP28-214ENST00000545540 MROH2AA6NES4 1674 aa19.26■□□□□ 0.67
USP28-214ENST00000545540 ITPRIPQ8IWB1 547 aa19.25■□□□□ 0.67
USP28-214ENST00000545540 ELL2O00472 640 aaPredicted RBP19.25■□□□□ 0.67
USP28-214ENST00000545540 FBXO31Q5XUX0 539 aaPredicted RBP19.25■□□□□ 0.67
USP28-214ENST00000545540 CLASP1Q7Z460 1538 aa19.24■□□□□ 0.67
USP28-214ENST00000545540 EVC2Q86UK5 1308 aa19.24■□□□□ 0.67
USP28-214ENST00000545540 MROH1Q8NDA8 1641 aa19.24■□□□□ 0.67
USP28-214ENST00000545540 POGKQ9P215 609 aa19.24■□□□□ 0.67
USP28-214ENST00000545540 THUMPD2Q9BTF0 503 aaKnown RBP19.23■□□□□ 0.67
USP28-214ENST00000545540 PPRC1Q5VV67 1664 aaKnown RBP19.23■□□□□ 0.67
USP28-214ENST00000545540 PRAM1Q96QH2 718 aa19.23■□□□□ 0.67
USP28-214ENST00000545540 SSH1Q8WYL5 1049 aa19.22■□□□□ 0.67
USP28-214ENST00000545540 MFAP1P55081 439 aaKnown RBP19.22■□□□□ 0.67
USP28-214ENST00000545540 INO80Q9ULG1 1556 aaPredicted RBP19.21■□□□□ 0.67
USP28-214ENST00000545540 SLC24A1O60721 1099 aa19.21■□□□□ 0.66
USP28-214ENST00000545540 CD109Q6YHK3 1445 aa19.2■□□□□ 0.66
USP28-214ENST00000545540 DEPDC5O75140 1603 aa19.2■□□□□ 0.66
USP28-214ENST00000545540 RIPK4P57078 832 aa19.2■□□□□ 0.66
USP28-214ENST00000545540 ZNF518AQ6AHZ1 1483 aa19.2■□□□□ 0.66
USP28-214ENST00000545540 VGFO15240 615 aaPredicted RBP19.2■□□□□ 0.66
USP28-214ENST00000545540 HMOX1P09601 288 aa19.2■□□□□ 0.66
USP28-214ENST00000545540 DZIP1LQ8IYY4 767 aaKnown RBP19.2■□□□□ 0.66
USP28-214ENST00000545540 NOB1Q9ULX3 412 aaKnown RBP19.2■□□□□ 0.66
USP28-214ENST00000545540 EFCAB6Q5THR3 1501 aa19.2■□□□□ 0.66
USP28-214ENST00000545540 KIF1BO60333 1816 aa19.2■□□□□ 0.66
USP28-214ENST00000545540 TRIM27P14373 513 aa19.19■□□□□ 0.66
USP28-214ENST00000545540 WDR63Q8IWG1 891 aa19.19■□□□□ 0.66
USP28-214ENST00000545540 MYOM2P54296 1465 aa19.19■□□□□ 0.66
USP28-214ENST00000545540 TMPOP42166 694 aaKnown RBP19.19■□□□□ 0.66
USP28-214ENST00000545540 MYH16Q9H6N6 1097 aa19.19■□□□□ 0.66
USP28-214ENST00000545540 VWDEQ8N2E2 1590 aa19.19■□□□□ 0.66
USP28-214ENST00000545540 ZKSCAN2Q63HK3 967 aa19.19■□□□□ 0.66
USP28-214ENST00000545540 MLECQ14165 292 aa19.18■□□□□ 0.66
USP28-214ENST00000545540 PMFBP1Q8TBY8 1022 aa19.18■□□□□ 0.66
USP28-214ENST00000545540 CABP1Q9NZU7 370 aa19.18■□□□□ 0.66
USP28-214ENST00000545540 STAG3Q9UJ98 1225 aa19.18■□□□□ 0.66
USP28-214ENST00000545540 MAPK8IP3Q9UPT6 1336 aa19.18■□□□□ 0.66
USP28-214ENST00000545540 FYB1O15117 783 aa19.18■□□□□ 0.66
USP28-214ENST00000545540 MVPQ14764 893 aaKnown RBP19.18■□□□□ 0.66
USP28-214ENST00000545540 TRIM35Q9UPQ4 493 aa19.18■□□□□ 0.66
USP28-214ENST00000545540 WAPLQ7Z5K2 1190 aa19.18■□□□□ 0.66
USP28-214ENST00000545540 KIDINS220Q9ULH0 1771 aa19.18■□□□□ 0.66
USP28-214ENST00000545540 A0A1W2PP64 1363 aa19.17■□□□□ 0.66
USP28-214ENST00000545540 GZF1Q9H116 711 aaPredicted RBP19.17■□□□□ 0.66
USP28-214ENST00000545540 RWDD1Q9H446 243 aaPredicted RBP19.17■□□□□ 0.66
USP28-214ENST00000545540 C1orf115Q9H7X2 142 aa19.17■□□□□ 0.66
USP28-214ENST00000545540 PHF23Q9BUL5 403 aaPredicted RBP19.16■□□□□ 0.66
USP28-214ENST00000545540 TMEM57Q8N5G2 664 aa19.15■□□□□ 0.66
USP28-214ENST00000545540 ABCA9Q8IUA7 1624 aa19.15■□□□□ 0.66
USP28-214ENST00000545540 TBC1D2Q9BYX2 928 aa19.15■□□□□ 0.66
USP28-214ENST00000545540 UPF2Q9HAU5 1272 aaKnown RBP19.14■□□□□ 0.65
USP28-214ENST00000545540 ZRANB1Q9UGI0 708 aa19.14■□□□□ 0.65
USP28-214ENST00000545540 LNPKQ9C0E8 428 aa19.13■□□□□ 0.65
USP28-214ENST00000545540 NCKAP5LQ9HCH0 1330 aa19.13■□□□□ 0.65
USP28-214ENST00000545540 SBNO2Q9Y2G9 1366 aa19.12■□□□□ 0.65
USP28-214ENST00000545540 PLEKHF1Q96S99 279 aa19.12■□□□□ 0.65
USP28-214ENST00000545540 NGEFQ8N5V2 710 aa19.12■□□□□ 0.65
USP28-214ENST00000545540 CDK19Q9BWU1 502 aa19.12■□□□□ 0.65
USP28-214ENST00000545540 BECN1Q14457 450 aa19.11■□□□□ 0.65
USP28-214ENST00000545540 ANKRD36BQ8N2N9 1353 aa19.11■□□□□ 0.65
USP28-214ENST00000545540 SHPRHQ149N8 1683 aa19.1■□□□□ 0.65
USP28-214ENST00000545540 QRICH2Q9H0J4 1663 aa19.1■□□□□ 0.65
USP28-214ENST00000545540 ADGRB1O14514 1584 aa19.1■□□□□ 0.65
USP28-214ENST00000545540 PHACTR3Q96KR7 559 aa19.1■□□□□ 0.65
USP28-214ENST00000545540 NRXN1Q9ULB1 1477 aa19.1■□□□□ 0.65
USP28-214ENST00000545540 ADGRB3O60242 1522 aa19.1■□□□□ 0.65
USP28-214ENST00000545540 NUTM2FA1L443 756 aa19.1■□□□□ 0.65
USP28-214ENST00000545540 PRKAR2BP31323 418 aa19.1■□□□□ 0.65
USP28-214ENST00000545540 DIAPH1O60610 1272 aaKnown RBP19.09■□□□□ 0.65
USP28-214ENST00000545540 FOXD4L1Q9NU39 408 aa19.09■□□□□ 0.65
USP28-214ENST00000545540 ATF7IPQ6VMQ6 1270 aa19.09■□□□□ 0.65
USP28-214ENST00000545540 TBC1D32Q96NH3 1257 aa19.09■□□□□ 0.65
USP28-214ENST00000545540 OSCARQ8IYS5 282 aa19.09■□□□□ 0.65
USP28-214ENST00000545540 TULP4Q9NRJ4 1543 aa19.09■□□□□ 0.65
USP28-214ENST00000545540 ARAP3Q8WWN8 1544 aa19.08■□□□□ 0.64
USP28-214ENST00000545540 IQSEC2Q5JU85 1478 aa19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms