RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 ASXL1Q8IXJ9 1541 aa17.12■□□□□ 0.33
HDAC4-216ENST00000544989 C1orf167Q5SNV9 1468 aa17.12■□□□□ 0.33
HDAC4-216ENST00000544989 CDC42BPGQ6DT37 1551 aa17.11■□□□□ 0.33
HDAC4-216ENST00000544989 DLC1Q96QB1 1528 aa17.1■□□□□ 0.33
HDAC4-216ENST00000544989 COL16A1Q07092 1604 aaPredicted RBP17.1■□□□□ 0.33
HDAC4-216ENST00000544989 WAPLQ7Z5K2 1190 aa17.09■□□□□ 0.33
HDAC4-216ENST00000544989 SPATA31A6Q5VVP1 1343 aa17.09■□□□□ 0.33
HDAC4-216ENST00000544989 LRRC59Q96AG4 307 aaKnown RBP17.08■□□□□ 0.32
HDAC4-216ENST00000544989 POGKQ9P215 609 aa17.07■□□□□ 0.32
HDAC4-216ENST00000544989 ADGRB1O14514 1584 aa17.06■□□□□ 0.32
HDAC4-216ENST00000544989 NHSL1Q5SYE7 1610 aa17.06■□□□□ 0.32
HDAC4-216ENST00000544989 PLEKHH1Q9ULM0 1364 aa17.05■□□□□ 0.32
HDAC4-216ENST00000544989 PRAM1Q96QH2 718 aa17.05■□□□□ 0.32
HDAC4-216ENST00000544989 UPF1Q92900 1129 aaKnown RBP eCLIP17.04■□□□□ 0.32
HDAC4-216ENST00000544989 NPHP3Q7Z494 1330 aa17.03■□□□□ 0.32
HDAC4-216ENST00000544989 ESCO1Q5FWF5 840 aa17.03■□□□□ 0.32
HDAC4-216ENST00000544989 SHPRHQ149N8 1683 aa17.03■□□□□ 0.32
HDAC4-216ENST00000544989 ORAI2Q96SN7 254 aa17.02■□□□□ 0.32
HDAC4-216ENST00000544989 TRAK1Q9UPV9 953 aa17.02■□□□□ 0.32
HDAC4-216ENST00000544989 EIF3AQ14152 1382 aaKnown RBP17.02■□□□□ 0.31
HDAC4-216ENST00000544989 KIAA1210Q9ULL0 1709 aa17.01■□□□□ 0.31
HDAC4-216ENST00000544989 SOS2Q07890 1332 aaPredicted RBP17■□□□□ 0.31
HDAC4-216ENST00000544989 MEX3CQ5U5Q3 659 aaKnown RBP16.99■□□□□ 0.31
HDAC4-216ENST00000544989 CDK12Q9NYV4 1490 aaPredicted RBP16.99■□□□□ 0.31
HDAC4-216ENST00000544989 FMN2Q9NZ56 1722 aa16.99■□□□□ 0.31
HDAC4-216ENST00000544989 SAFB2Q14151 953 aaKnown RBP eCLIP16.98■□□□□ 0.31
HDAC4-216ENST00000544989 L3MBTL2Q969R5 705 aa16.98■□□□□ 0.31
HDAC4-216ENST00000544989 LRP6O75581 1613 aa16.98■□□□□ 0.31
HDAC4-216ENST00000544989 ADGRB2O60241 1585 aa16.98■□□□□ 0.31
HDAC4-216ENST00000544989 ANKARQ7Z5J8 1434 aa16.97■□□□□ 0.31
HDAC4-216ENST00000544989 NEUROD1Q13562 356 aa16.97■□□□□ 0.31
HDAC4-216ENST00000544989 SIN3AQ96ST3 1273 aa16.97■□□□□ 0.31
HDAC4-216ENST00000544989 ZNF772Q68DY9 489 aaPredicted RBP16.96■□□□□ 0.31
HDAC4-216ENST00000544989 DDX17Q92841 729 aaKnown RBP16.96■□□□□ 0.31
HDAC4-216ENST00000544989 PNPLA6Q8IY17 1366 aa16.96■□□□□ 0.31
HDAC4-216ENST00000544989 KIF1AQ12756 1690 aa16.96■□□□□ 0.31
HDAC4-216ENST00000544989 NUTM2FA1L443 756 aa16.95■□□□□ 0.3
HDAC4-216ENST00000544989 FOXO3O43524 673 aa16.94■□□□□ 0.3
HDAC4-216ENST00000544989 PHF8Q9UPP1 1060 aa16.94■□□□□ 0.3
HDAC4-216ENST00000544989 WASLO00401 505 aaPredicted RBP16.93■□□□□ 0.3
HDAC4-216ENST00000544989 PSME1Q06323 249 aa16.93■□□□□ 0.3
HDAC4-216ENST00000544989 MINK1Q8N4C8 1332 aaPredicted RBP16.93■□□□□ 0.3
HDAC4-216ENST00000544989 PXDNQ92626 1479 aa16.93■□□□□ 0.3
HDAC4-216ENST00000544989 NUTM2BA6NNL0 878 aaPredicted RBP16.92■□□□□ 0.3
HDAC4-216ENST00000544989 NUTM2EB1AL46 878 aaPredicted RBP16.92■□□□□ 0.3
HDAC4-216ENST00000544989 NUTM2AQ8IVF1 878 aaPredicted RBP16.92■□□□□ 0.3
HDAC4-216ENST00000544989 ARHGEF28Q8N1W1 1705 aaKnown RBP16.92■□□□□ 0.3
HDAC4-216ENST00000544989 NBPF1Q3BBV0 1214 aa16.91■□□□□ 0.3
HDAC4-216ENST00000544989 HIRIP3Q9BW71 556 aaPredicted RBP16.91■□□□□ 0.3
HDAC4-216ENST00000544989 TULP4Q9NRJ4 1543 aa16.91■□□□□ 0.3
HDAC4-216ENST00000544989 TONSLQ96HA7 1378 aa16.9■□□□□ 0.3
HDAC4-216ENST00000544989 KRT28Q7Z3Y7 464 aa16.89■□□□□ 0.29
HDAC4-216ENST00000544989 CENPJQ9HC77 1338 aaPredicted RBP16.88■□□□□ 0.29
HDAC4-216ENST00000544989 COL22A1Q8NFW1 1626 aaPredicted RBP16.88■□□□□ 0.29
HDAC4-216ENST00000544989 SBNO1A3KN83 1393 aa16.88■□□□□ 0.29
HDAC4-216ENST00000544989 ROCK2O75116 1388 aaKnown RBP16.88■□□□□ 0.29
HDAC4-216ENST00000544989 SPATA31A3Q5VYP0 1347 aa16.87■□□□□ 0.29
HDAC4-216ENST00000544989 GPRASP1Q5JY77 1395 aa16.87■□□□□ 0.29
HDAC4-216ENST00000544989 EP400Q96L91 3159 aa16.86■□□□□ 0.29
HDAC4-216ENST00000544989 RXRBP28702 533 aa16.86■□□□□ 0.29
HDAC4-216ENST00000544989 XPCQ01831 940 aaPredicted RBP16.86■□□□□ 0.29
HDAC4-216ENST00000544989 ARHGEF10O15013 1369 aa16.86■□□□□ 0.29
HDAC4-216ENST00000544989 CDK19Q9BWU1 502 aa16.85■□□□□ 0.29
HDAC4-216ENST00000544989 TNS3Q68CZ2 1445 aa16.85■□□□□ 0.29
HDAC4-216ENST00000544989 TRPM1Q7Z4N2 1603 aa16.85■□□□□ 0.29
HDAC4-216ENST00000544989 NUDT16Q96DE0 195 aaKnown RBP16.84■□□□□ 0.29
HDAC4-216ENST00000544989 C8orf37Q96NL8 207 aa16.84■□□□□ 0.29
HDAC4-216ENST00000544989 AFF2P51816 1311 aa16.84■□□□□ 0.29
HDAC4-216ENST00000544989 USP32Q8NFA0 1604 aa16.84■□□□□ 0.29
HDAC4-216ENST00000544989 RGPD8O14715 1765 aaPredicted RBP16.84■□□□□ 0.29
HDAC4-216ENST00000544989 NGDNQ8NEJ9 315 aaKnown RBP16.83■□□□□ 0.28
HDAC4-216ENST00000544989 PMFBP1Q8TBY8 1022 aa16.83■□□□□ 0.28
HDAC4-216ENST00000544989 NGLY1Q96IV0 654 aa16.83■□□□□ 0.28
HDAC4-216ENST00000544989 PRR36Q9H6K5 1346 aa16.83■□□□□ 0.28
HDAC4-216ENST00000544989 CLSPNQ9HAW4 1339 aa16.83■□□□□ 0.28
HDAC4-216ENST00000544989 CCDC61Q9Y6R9 512 aa16.83■□□□□ 0.28
HDAC4-216ENST00000544989 ITSN1Q15811 1721 aa16.82■□□□□ 0.28
HDAC4-216ENST00000544989 ADAMTS2O95450 1211 aa16.82■□□□□ 0.28
HDAC4-216ENST00000544989 ATP7BP35670 1465 aa16.81■□□□□ 0.28
HDAC4-216ENST00000544989 SRPK2P78362 688 aaKnown RBP16.8■□□□□ 0.28
HDAC4-216ENST00000544989 EVC2Q86UK5 1308 aa16.79■□□□□ 0.28
HDAC4-216ENST00000544989 HAP1P54257 671 aaPredicted RBP16.79■□□□□ 0.28
HDAC4-216ENST00000544989 NBPF8Q3BBV2 869 aa16.79■□□□□ 0.28
HDAC4-216ENST00000544989 FNBP4Q8N3X1 1017 aaPredicted RBP16.79■□□□□ 0.28
HDAC4-216ENST00000544989 PLEKHG3A1L390 1219 aa16.78■□□□□ 0.28
HDAC4-216ENST00000544989 LMOD2Q6P5Q4 547 aa16.78■□□□□ 0.28
HDAC4-216ENST00000544989 CARD11Q9BXL7 1154 aa16.78■□□□□ 0.28
HDAC4-216ENST00000544989 TIMELESSQ9UNS1 1208 aa16.78■□□□□ 0.28
HDAC4-216ENST00000544989 RALGAPBQ86X10 1494 aa16.78■□□□□ 0.28
HDAC4-216ENST00000544989 POLR3AO14802 1390 aaPredicted RBP16.77■□□□□ 0.28
HDAC4-216ENST00000544989 QTRT2Q9H974 415 aaKnown RBP16.77■□□□□ 0.28
HDAC4-216ENST00000544989 QRICH2Q9H0J4 1663 aa16.77■□□□□ 0.28
HDAC4-216ENST00000544989 PCGF6Q9BYE7 350 aa16.76■□□□□ 0.27
HDAC4-216ENST00000544989 USP21Q9UK80 565 aa16.76■□□□□ 0.27
HDAC4-216ENST00000544989 TRPC5Q9UL62 973 aaPredicted RBP16.76■□□□□ 0.27
HDAC4-216ENST00000544989 RGS12O14924 1447 aa16.76■□□□□ 0.27
HDAC4-216ENST00000544989 BRD4O60885 1362 aaPredicted RBP16.76■□□□□ 0.27
HDAC4-216ENST00000544989 SBNO2Q9Y2G9 1366 aa16.76■□□□□ 0.27
HDAC4-216ENST00000544989 SLC24A1O60721 1099 aa16.75■□□□□ 0.27
HDAC4-216ENST00000544989 RBM6P78332 1123 aaKnown RBP16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms