RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 MYOM2P54296 1465 aa19.35■□□□□ 0.69
RTN3-213ENST00000543552 STK26Q9P289 416 aa19.35■□□□□ 0.69
RTN3-213ENST00000543552 DDX17Q92841 729 aaKnown RBP19.34■□□□□ 0.69
RTN3-213ENST00000543552 YTHDC2Q9H6S0 1430 aaKnown RBP19.34■□□□□ 0.69
RTN3-213ENST00000543552 SOS2Q07890 1332 aaPredicted RBP19.33■□□□□ 0.69
RTN3-213ENST00000543552 ORAI2Q96SN7 254 aa19.33■□□□□ 0.68
RTN3-213ENST00000543552 NRXN1Q9ULB1 1477 aa19.33■□□□□ 0.68
RTN3-213ENST00000543552 NPHP3Q7Z494 1330 aa19.32■□□□□ 0.68
RTN3-213ENST00000543552 ESCO1Q5FWF5 840 aa19.31■□□□□ 0.68
RTN3-213ENST00000543552 TMEM132EQ6IEE7 984 aa19.31■□□□□ 0.68
RTN3-213ENST00000543552 AFF2P51816 1311 aa19.3■□□□□ 0.68
RTN3-213ENST00000543552 C14orf93Q9H972 538 aaKnown RBP19.3■□□□□ 0.68
RTN3-213ENST00000543552 DHX57Q6P158 1386 aaKnown RBP19.3■□□□□ 0.68
RTN3-213ENST00000543552 RXRBP28702 533 aa19.29■□□□□ 0.68
RTN3-213ENST00000543552 WAPLQ7Z5K2 1190 aa19.29■□□□□ 0.68
RTN3-213ENST00000543552 SIRT1Q96EB6 747 aa19.29■□□□□ 0.68
RTN3-213ENST00000543552 C8orf37Q96NL8 207 aa19.29■□□□□ 0.68
RTN3-213ENST00000543552 HRCP23327 699 aa19.28■□□□□ 0.68
RTN3-213ENST00000543552 CDK12Q9NYV4 1490 aaPredicted RBP19.28■□□□□ 0.68
RTN3-213ENST00000543552 FMN2Q9NZ56 1722 aa19.26■□□□□ 0.67
RTN3-213ENST00000543552 PLEKHH1Q9ULM0 1364 aa19.26■□□□□ 0.67
RTN3-213ENST00000543552 KIF1AQ12756 1690 aa19.26■□□□□ 0.67
RTN3-213ENST00000543552 COL22A1Q8NFW1 1626 aaPredicted RBP19.25■□□□□ 0.67
RTN3-213ENST00000543552 PXDNQ92626 1479 aa19.24■□□□□ 0.67
RTN3-213ENST00000543552 ADAMTS2O95450 1211 aa19.24■□□□□ 0.67
RTN3-213ENST00000543552 CFAP70Q5T0N1 1121 aa19.24■□□□□ 0.67
RTN3-213ENST00000543552 NGLY1Q96IV0 654 aa19.24■□□□□ 0.67
RTN3-213ENST00000543552 STAC3Q96MF2 364 aa19.24■□□□□ 0.67
RTN3-213ENST00000543552 DLC1Q96QB1 1528 aa19.22■□□□□ 0.67
RTN3-213ENST00000543552 NUTM2FA1L443 756 aa19.22■□□□□ 0.67
RTN3-213ENST00000543552 FOXO3O43524 673 aa19.22■□□□□ 0.67
RTN3-213ENST00000543552 RBM6P78332 1123 aaKnown RBP19.21■□□□□ 0.67
RTN3-213ENST00000543552 PRAM1Q96QH2 718 aa19.2■□□□□ 0.66
RTN3-213ENST00000543552 QTRT2Q9H974 415 aaKnown RBP19.2■□□□□ 0.66
RTN3-213ENST00000543552 POGKQ9P215 609 aa19.2■□□□□ 0.66
RTN3-213ENST00000543552 XPCQ01831 940 aaPredicted RBP19.17■□□□□ 0.66
RTN3-213ENST00000543552 DCAF11Q8TEB1 546 aa19.17■□□□□ 0.66
RTN3-213ENST00000543552 USP21Q9UK80 565 aa19.17■□□□□ 0.66
RTN3-213ENST00000543552 ADGRB1O14514 1584 aa19.17■□□□□ 0.66
RTN3-213ENST00000543552 EIF3AQ14152 1382 aaKnown RBP19.17■□□□□ 0.66
RTN3-213ENST00000543552 ADGRB2O60241 1585 aa19.16■□□□□ 0.66
RTN3-213ENST00000543552 FNBP4Q8N3X1 1017 aaPredicted RBP19.16■□□□□ 0.66
RTN3-213ENST00000543552 TRPC5Q9UL62 973 aaPredicted RBP19.16■□□□□ 0.66
RTN3-213ENST00000543552 ANKARQ7Z5J8 1434 aa19.16■□□□□ 0.66
RTN3-213ENST00000543552 PSME1Q06323 249 aa19.15■□□□□ 0.66
RTN3-213ENST00000543552 SAFB2Q14151 953 aaKnown RBP eCLIP19.15■□□□□ 0.661e-7■■■■□ 23.5
RTN3-213ENST00000543552 PHF8Q9UPP1 1060 aa19.15■□□□□ 0.66
RTN3-213ENST00000543552 KDM2AQ9Y2K7 1162 aa19.15■□□□□ 0.66
RTN3-213ENST00000543552 RGS12O14924 1447 aa19.15■□□□□ 0.66
RTN3-213ENST00000543552 SPATA31A3Q5VYP0 1347 aa19.14■□□□□ 0.65
RTN3-213ENST00000543552 MARF1Q9Y4F3 1742 aaKnown RBP19.14■□□□□ 0.65
RTN3-213ENST00000543552 KRT28Q7Z3Y7 464 aa19.13■□□□□ 0.65
RTN3-213ENST00000543552 UPF1Q92900 1129 aaKnown RBP eCLIP19.13■□□□□ 0.65
RTN3-213ENST00000543552 TNS3Q68CZ2 1445 aa19.12■□□□□ 0.65
RTN3-213ENST00000543552 TRAK1Q9UPV9 953 aa19.12■□□□□ 0.65
RTN3-213ENST00000543552 RGPD8O14715 1765 aaPredicted RBP19.11■□□□□ 0.65
RTN3-213ENST00000543552 ATRNO75882 1429 aa19.1■□□□□ 0.65
RTN3-213ENST00000543552 SBNO1A3KN83 1393 aa19.1■□□□□ 0.65
RTN3-213ENST00000543552 ARHGEF10O15013 1369 aa19.1■□□□□ 0.65
RTN3-213ENST00000543552 HAP1P54257 671 aaPredicted RBP19.09■□□□□ 0.65
RTN3-213ENST00000543552 ATAD2Q6PL18 1390 aa19.07■□□□□ 0.64
RTN3-213ENST00000543552 USP32Q8NFA0 1604 aa19.07■□□□□ 0.64
RTN3-213ENST00000543552 TULP4Q9NRJ4 1543 aa19.07■□□□□ 0.64
RTN3-213ENST00000543552 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.07■□□□□ 0.64
RTN3-213ENST00000543552 BCL9LQ86UU0 1499 aa19.07■□□□□ 0.64
RTN3-213ENST00000543552 MINK1Q8N4C8 1332 aaPredicted RBP19.06■□□□□ 0.64
RTN3-213ENST00000543552 HIRIP3Q9BW71 556 aaPredicted RBP19.06■□□□□ 0.64
RTN3-213ENST00000543552 GPRASP1Q5JY77 1395 aa19.06■□□□□ 0.64
RTN3-213ENST00000543552 KIAA1210Q9ULL0 1709 aa19.05■□□□□ 0.64
RTN3-213ENST00000543552 WASLO00401 505 aaPredicted RBP19.04■□□□□ 0.64
RTN3-213ENST00000543552 LMOD2Q6P5Q4 547 aa19.04■□□□□ 0.64
RTN3-213ENST00000543552 ARHGEF28Q8N1W1 1705 aaKnown RBP19.04■□□□□ 0.64
RTN3-213ENST00000543552 PMFBP1Q8TBY8 1022 aa19.03■□□□□ 0.64
RTN3-213ENST00000543552 SLIT2O94813 1529 aa19.03■□□□□ 0.64
RTN3-213ENST00000543552 UNC5CLQ8IV45 518 aa19.02■□□□□ 0.64
RTN3-213ENST00000543552 ITSN1Q15811 1721 aa19.02■□□□□ 0.63
RTN3-213ENST00000543552 GJD4Q96KN9 370 aaPredicted RBP19.01■□□□□ 0.63
RTN3-213ENST00000543552 ABCA3Q99758 1704 aa19■□□□□ 0.63
RTN3-213ENST00000543552 EP400Q96L91 3159 aa18.99■□□□□ 0.63
RTN3-213ENST00000543552 NGDNQ8NEJ9 315 aaKnown RBP18.99■□□□□ 0.63
RTN3-213ENST00000543552 TRPM3Q9HCF6 1732 aaPredicted RBP18.99■□□□□ 0.63
RTN3-213ENST00000543552 NWD2Q9ULI1 1742 aa18.99■□□□□ 0.63
RTN3-213ENST00000543552 PRR36Q9H6K5 1346 aa18.99■□□□□ 0.63
RTN3-213ENST00000543552 RALGAPBQ86X10 1494 aa18.97■□□□□ 0.63
RTN3-213ENST00000543552 CABLES1Q8TDN4 633 aa18.97■□□□□ 0.63
RTN3-213ENST00000543552 PLCH1Q4KWH8 1693 aa18.97■□□□□ 0.63
RTN3-213ENST00000543552 ATP7BP35670 1465 aa18.97■□□□□ 0.63
RTN3-213ENST00000543552 ALS2Q96Q42 1657 aa18.96■□□□□ 0.63
RTN3-213ENST00000543552 PLEKHG5O94827 1062 aa18.95■□□□□ 0.62
RTN3-213ENST00000543552 GLI3P10071 1580 aa18.94■□□□□ 0.62
RTN3-213ENST00000543552 VPS72Q15906 364 aa18.94■□□□□ 0.62
RTN3-213ENST00000543552 NUDT16Q96DE0 195 aaKnown RBP18.94■□□□□ 0.62
RTN3-213ENST00000543552 PAK3O75914 559 aaPredicted RBP18.93■□□□□ 0.62
RTN3-213ENST00000543552 CCDC125Q86Z20 511 aa18.93■□□□□ 0.62
RTN3-213ENST00000543552 CDK19Q9BWU1 502 aa18.92■□□□□ 0.62
RTN3-213ENST00000543552 CCDC9Q9Y3X0 531 aaKnown RBP18.92■□□□□ 0.62
RTN3-213ENST00000543552 COL14A1Q05707 1796 aaKnown RBP18.91■□□□□ 0.62
RTN3-213ENST00000543552 TOPAZ1Q8N9V7 1692 aa18.9■□□□□ 0.62
RTN3-213ENST00000543552 CCDC61Q9Y6R9 512 aa18.9■□□□□ 0.62
RTN3-213ENST00000543552 FAM83GA6ND36 823 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 125.8 ms